Nuclear magnetic resonance methods for the detection and study of low- barrier hydrogen bonds on enzymes

Methods in Enzymology

Volumn 308, Issue , 1999, Pages 219-245

  Mildvan, Albert S ^a   Harris, Thomas K ^a   Abeygunawardana, Chitrananda ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME;

ARTICLE; CHEMICAL STRUCTURE; FREEZE DRYING; HYDROGEN BOND; KINETICS; NONHUMAN; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; TEMPERATURE MEASUREMENT; X RAY DIFFRACTION;

EID: 0032872140     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(99)08012-X     Document Type: Article

References (64)

1. F. Hibbert and J. Emsley, Adv Phys. Organ. Chem. 26, 255 (1990).
2. M. M. Kreevoy and T. M. Liang, J. Am. Chem. Soc. 102, 3315 (1980).
3. Th. Steiner and W. Saenger, Acta Cryst. B50, 348 (1994).
4. J. Donohue, in "Structural Chemistry and Molecular Biology" (A. Rich and N. Davidson, eds.), p. 443. Freeman, San Francisco, 1968.
5. H. Adalsteinsson, A. H. Maulitz, and T. C. Bruice, J. Am. Chem. Soc. 119, 7689 (1996).
6. C. J. Smallwood and M. A. McAllister, J. Am. Chem. Soc. 119, 11277 (1997).
7. T. B. McMahon and J. W. Larson, J. Am. Chem. Soc. 104, 5848 (1982).
8. K. Abu-Dari, K. N. Raymond, and D. P. Freyberg, J. Am. Chem. Soc 101, 3639 (1979).
9. S. Shan and D. Herschlag, Proc. Natl. Acad. Sci. U.S.A. 93, 14474 (1996).
10. G. I. Makhatadze and P. Privalov, Adv. Prot. Chem. 47, 307 (1995).
11. J. D. Watson, N. H. Hopkins, J. W. Roberts, J. A. Steitz, and A. M. Weiner, "Molecular Biology of the Gene," p. 132. Benjamin/Cummings, Menlo Park, CA, 1987.
12. S. N. Smirnov, N. S. Golubev, G. S. Denisov, H. Benedict, P. Schah-Mohammedi, and H. H. Limbach, J. Am. Chem. Soc. 118, 4094 (1996).
13. N. S. Golubev, G. S. Denisov, S. N. Smirnov, D. N. Shchepkin, and H. H. Limbach. Z. Physikal. Chem. 196, 73 (1996).
14. W. W. Cleland, Biochemistry 31, 317 (1992).
15. W. W. Cleland and M. M. Kreevoy, Science 264, 1887 (1994).
16. G. Robillard and R. G. Shulman, J. Mol. Biol. 71, 507 (1972).
17. N. S. Golubev, V. A. Gindin, S. S. Ligai, and S. N. Smirnov, Biochemistry (Moscow) 59, 613 (1994).
18. P. A. Frey, S. A. Whitt, and J. B. Tobin, Science 264, 1927 (1994).
19. C. S. Cassidy, J. Lin, and P. A. Frey, Biochemistry 36, 4576 (1997).
20. Y.-K. Li, A. Kuliopulos, A. S. Mildvan, and P. Talalay, Biochemistry 32, 1816 (1993).
21. Q. Zhao, A. S. Mildvan, and P. Talalay, Biochemistry 34, 426 (1995).
22. J. A. Gerlt and P. G. Gassman, J. Am. Chem. Soc. 115, 11552 (1993).
23. J. Markley and I. B. Ibanez, Biochemistry 17, 4637 (1978).
24. T.-C. Liang and R. H. Abeles, Biochemistry 26, 7603 (1987).
25. J. L. Markley and W. M. Westler, Biochemistry 35, 11092 (1996).
26. A. Kintanar, C. M. Metzler, D. E. Metzler, and, R. D. Scott, J. Biol. Chem. 266, 17222 (1991).
27. E. Mollova, D. E. Metzler, A. Kintanar, H. Kagamiyama, H. Hayashi, K. Hirotsu, and I. Miyahara, Biochemistry 36, 615 (1997).
28. Q. Zhao, C. Abeygunawardana, P. Talalay, and A. S. Mildvan, Proc. Natl. Acad. Sci. U.S.A. 93, 8220 (1996).
29. Q. Zhao, C. Abeygunawardana, A. G. Gittis, and A. S. Mildvan, Biochemistry 36, 14616 (1997).
30. T. K. Harris, C. Abeygunawardana, and A. S. Mildvan, Biochemistry 36, 14661 (1997).
31. A. McDermott and C. F. Ridenour, in "Encyclopedia of NMR," p. 3820. Wiley, Sussex, England, 1996.
32. G. Wagner, A. Pardi, and K. Wüthrich, J. Am. Chem. Soc. 105, 5948 (1983).
33. H. Li, H. Yamada, and K. Akasaka, Biochemistry 37, 1167 (1998).
34. S. S. Raiford, C. L. Fisk, and E. D. Becker, Anal. Chem. 51, 2050 (1979).
35. L. P. M. Orbons, G. A. van der Marel, and C. Altona, Eur. J. Biochem. 170, 225 (1987).
36. D. S. Wishart and B. D. Sykes, Methods Enzymol. 239, 363 (1994).
37. P. J. Hore, Methods Enzymol. 176, 64 (1989).
38. D. L. Turner, J. Magn. Reson. 54, 146 (1983).
39. V. Sklenár and A. Bax, J. Magn. Reson. 74, 469 (1987).
40. P. Plateau and M. Gueron, J. Am. Chem. Soc. 104, 7310 (1982).
41. W. W. Bachovchin, Proc. Natl. Acad. Sci. U.S.A. 82, 7948 (1985).
42. P. J. Lodi and J. R. Knowles, Biochemistry 30, 6948 (1991).
43. E. L. Ash, J. L. Sudmeier, E. C. De Fabo, and W. W. Bachovchin, Science 278, 1128 (1997).
44. R. W. Wu, S. Ebrahemian, M. E. Zawrotney, L. D. Thornberg, G. C. Perez-Alverado, P. Brothers, R. M. Pollack, and M. F. Summers, Science 276, 415 (1997).
45. D. E. Metzler, C. M. Metzler, E. T. Mollova, R. D. Scott, S. Tanase, K. Kogo, T. Higacki, and Y. Morino, J. Biol. Chem. 269, 28017 (1994).
46. D. E. Metzler, C. M. Metzler, R. D. Scott, E. T. Mollova, H. Kagamiyama, T. Yano, S. Kuramitsu, H. Hayashi, K. Hirotsu, and I. Miyahara, J. Biol. Chem. 269, 28027 (1994).
47. R. C. Davenport, P. A. Bash, B. A. Seaton, M. Karplus, G. A. Petsko, and D. Ringe, Biochemistry 30, 5821 (1991).
48. S. H. Smallcomb, J. Am. Chem. Soc. 115, 4776 (1993).
49. K. B. Schowen and R. L. Schowen, Methods Enzymol. 87, 551 (1982).
50. M. M. Kreevoy, J. Chem. Edu. 41, 636 (1964).
51. D. Bao, C. Kettner, W. P. Huskey, and F. Jordan, submitted for publication (1999).
52. S. N. Loh and J. L. Markley, in "Techniques in Protein Chemistry IV" (R. Angeletti, ed.), p. 517. Academic Press, New York, 1993.
53. S. N. Loh and J. L. Markley, Biochemistry 33, 1029 (1994).
54. A. Hvidt and S. O. Nielsen, Adv. Prot. Chem. 21, 288 (1966).
55. W. Qiwen, A. D. Kline, and K. Wüthrich, Biochemistry 26, 6488 (1987).
56. T. J. Swift and R. E. Connick, J. Chem. Phys. 37, 307 (1963).
57. E. Liepinsh, G. Otting, and K. Wüthrich, J. Biomol. NMR 2, 447 (1992).
58. K. Wüthrich, in "NMR of Proteins and Nucleic Acids," p. 23. Wiley, New York, 1986.
59. M. Eigen, Agnew. Chem. Intl. Ed. Engl. 3, 1 (1964).
60. A. Kuliopulos, P. Talalay, and A. S. Mildvan, Biochemistry 29, 10271 (1990).
61. L. Xue, P. Talalay, and A. S. Mildvan, Biochemistry 30, 10858 (1991).
62. C. S. Craik, S. Roczniak, C. Largman, and W. J. Rutter, Science 237, 909 (1987).
63. P. Carter and J. Wells, Nature 332, 564 (1988).
64. J. J. Onuffer and J. F. Kirsch, Prot. Engin, 1, 413 (1994).