Effects of genome position and the DNA damage checkpoint on the structure and frequency of sod2 gene amplification in fission yeast

Molecular Biology of the Cell

Volumn 10, Issue 7, 1999, Pages 2199-2208

  Patterson, Thomas E ^a,b,c   Albrecht, Elizabeth B ^c   Nurse, Paul ^b   Sazer, Shelley ^a   Stark, George R ^c  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

^c LERNER RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIPORTER; DOUBLE STRANDED DNA; LITHIUM CHLORIDE;

ANTIBIOTIC RESISTANCE; ARTICLE; CELL CYCLE S PHASE; CHROMOSOME 1; CHROMOSOME ARM; CHROMOSOME BREAKAGE; CHROMOSOME MAP; DNA DAMAGE; FUNGAL GENETICS; FUNGUS MUTANT; GENE AMPLIFICATION; GENE LOCATION; GENE STRUCTURE; NONHUMAN; PRIORITY JOURNAL; SCHIZOSACCHAROMYCES POMBE; TELOMERE;

FUNGI; SCHIZOSACCHAROMYCES POMBE;

EID: 0032854570     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.10.7.2199     Document Type: Article

References (41)

1. Al-Khodairy, F., and Carr, A.M. (1992). DNA repair mutants defining G2 checkpoint pathways in Schizosaccharomyces pombe. EMBO J. 11, 1343-1350.
2. Al-Khodairy, F., Fotou, E., Sheldrick, K.S., Griffiths, D.J.F., Lehmann, A.R., and Carr, A.M. (1994). Identification and characterization of new elements involved in checkpoint and feedback controls in fission yeast. Mol. Biol. Cell 5, 147-160.
3. Alfa, C., Fantes, P., Hyams, J., McLeod, J., and Warbrick, E. (1993). Experiments with Fission Yeast. A Laboratory Course Manual, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
4. Alitalo, K., and Schwab, M. (1986). Oncogene amplification in tumor cells. Adv. Cancer Res. 47, 235-281.
5. Bach, M.L., Roelants, F., De Montigny, J., Huang, M., Potier, S., and Souciet, J.L. (1995). Recovery of gene function by gene duplication in Saccharomyces cerevisiae. Yeast 11, 169-177.
6. Barel, I., Bignell, G., Simpson, A., and MacDonald, D. (1988). Isolation of a DNA fragment which complements glutamine synthetase deficient strains of S. pombe. Curr. Genet. 13, 487-494.
7. Beverley, S.M. (1988). Characterization of the unusual mobility of large circular DNAs in pulsed field-gradient electrophoresis. Nucleic Acids Res. 16, 925-939.
8. Britten, R.J., and Davidson, E.H. (1971). Repetitive and nonrepetitive DNA sequences and a speculation on the origins of evolutionary novelty. Q. Rev. Biol. 48, 565-611.
9. Brown, D.D., and Dawid, I.B. (1968). Specific gene amplification in oocytes. Oocyte nuclei contain extrachromosomal replicas of the genes for rRNA. Science 160, 272-280.
10. Butler, D., Yasuda, L., and Yao, M. (1996). Induction of large DNA palindrome formation in yeast: implications for gene amplification and genome stability in eukaryotes. Cell 87, 1115-1122.
11. Carr, A.M., MacNeill, S.A., Hayles, J., and Nurse, P. (1989). Molecular cloning and sequence analysis of mutant alleles of the fission yeast cdc2 protein kinase gene: implications for cdc2+ protein structure and function. Mol. Gen. Genet. 218, 41-49.
12. Coquelle, A., Pipiras, E., Toledo, F., Buttin, G., and Debatisse, M. (1997). Expression of fragile sites triggers intrachromosomal mammalian gene amplification and sets boundaries to early amplicons. Cell 89, 215-225.
13. Dibrov, P., Smith, J.J., Young, P.G., and Fliegel, L. (1997). Identification and localization of the sod2 gene product in fission yeast. FEBS Lett. 405, 119-124.
14. Dorsey, M., Peterson, C., Bray, K., and Paquin, C.E. (1992). Spontaneous amplification of the ADH4 gene in Saccharomyces cerevisiae. Genetics 132, 943-950.
15. Enoch, T., Carr, A.M., and Nurse, P. (1992). Fission yeast genes involved in coupling mitosis to completion of DNA-replication. Genes & Dev. 6, 2035-2046.
16. Fan, J.-B., Grothues, D., and Smith, C.L. (1991). Alignment of SfiI sites with the NotI restriction map of Schizosaccharomyces pombe genome. Nucleic Acids Res. 19, 6289-6294.
17. Fogel, S., and Welch, J.W. (1982). Tandem gene amplification mediates copper resistance in yeast. Proc. Natl. Acad. Sci. USA 79, 5342-5346.
18. Giai, M., Biglia, N., and Sismondi, P. (1991). Chemoresistance in breast tumors. Eur. J. Gynaecol. Oncol. 12, 359-373.
19. Giulotto, E., Knights, C., and Stark, G.R. (1987). Hamster cells with increased rates of DNA amplification, a new phenotype. Cell 48, 837-845.
20. Hansche, P.E., Beres, V., and Lange, P. (1978). Gene duplication in Saccharomyces cerevisiae. Genetics 88, 673-687.
21. Hoheisel, J., Maier, E., Mott, R., McCarthy, L., Grigoriev, A., Schalkwyk, L., Nizetic, D., Francis, F., and Lehrach, H. (1993). High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe. Cell 73, 109-120.
22. Huang, T., and Campbell, J.L. (1995). Amplification of a circular episome carrying an inverted repeat of the DFR1 locus and adjacent autonomously replicating sequence element of Saccharomyces cerevisiae. J. Biol. Chem. 270, 9607-9614.
23. Jia, Z-P., McCullough, N., Martel, R., Hemmingsen, S., and Young, P.G. (1992). Gene amplification at a locus encoding a putative Na+/H+ antiporter confers sodium and lithium tolerance in fission yeast. EMBO J. 11, 1631-1640.
24. Livingstone, L.R., White, A., Sprouse, J., Livanos, E., Jacks, T., and Tlsty. T.D. (1992). Altered cell cycle arrest and gene amplification potential accompany loss of wild-type p53. Cell 70, 923-935.
25. Mizukami, T., et al. (1993). A 13 kb resolution cosmid map of the 14 Mb fission yeast genome by nonrandom sequence-tagged site mapping. Cell 73, 121-132.
26. Moreno, S., Klar, A., and Nurse, P. (1991). Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 197, 795-823.
27. Ngan, V., and Clarke, L. (1997). The centromere enhancer mediates centromere activation in Schizosaccharomyces pombe. Mol. Cell. Biol. 17, 3305-3314.
28. Orr-Weaver, T.L., Johnston, C.G., and Spradling, A.C. (1989). The role of ACE3 in Drosophila chorion gene amplification. EMBO J. 8, 4153-4162.
29. Faquin, C.E., Dorsey, M., Crable, S., Sprinkel, K., Sondej, M., and Williamson, V.M. (1992). A spontaneous chromosomal amplification of the ADH2 gene in Saccharomyces cerevisiae. Genetics 130, 263-271.
30. Patterson, T., Stark, G., and Sazer, S. (1995). A strategy for quickly identifying all unique two-hybrid or library plasmids within a pool of yeast transformants. Nucleic Acids Res. 23, 4222-4333.
31. Rowley, R., Subramani, S., and Young, P.G. (1992). Checkpoint controls in Schizosaccharomyces pombe: rad1. EMBO J. 11, 1335-1342.
32. Smith, K.A., Agarwal, M.L., Chernov, M., Chernova, O.B., Deguchi, Y., Ishizaka, Y., Patterson, T.E., Poupon, M.-F., and Stark, G.R. (1995). Regulation and mechanisms of gene amplification. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 347, 49-56.
33. Smith, K.A., Gorman, P.A., Stark, M.B., Groves, R.P., and Stark, G.R. (1990). Distinctive chromosomal structures are formed very early in the amplification of CAD genes in Syrian hamster cells. Cell 63, 1219-1227.
34. Sugawara, N. (1989). DNA sequence at telomeres of the fission yeast Schizosaccharomyces pombe. Ph.D. Thesis. Cambridge, MA: Harvard University.
35. Tlsty, T., Margolin, B.H., and Lum, K. (1989). Differences in the rates of gene amplification in nontumorigenic and tumorigenic cell lines as measured by Luria-Delbruck fluctuation analysis. Proc. Natl. Acad. Sci. USA 86, 9441-9445.
36. Tlsty, T.D., White, A., and Sanchez, J. (1992). Suppression of gene amplification in human cell hybrids. Science 255,1425-1427.
37. Toledo, F., Smith, K.A., Buttin, G., and Debatisse, M. (1992). The evolution of the amplified adenylate deaminase 2 domains in Chinese hamster cells suggests the sequential operation of different mechanisms of DNA amplification. Mutat. Res. 276, 261-273.
38. Walworth, N., Davey, S., and Beach, D. (1993). Fission yeast chk1 protein kinase links the rad checkpoint pathway to cdc2. Nature 363, 368-371.
39. Windle, B., Draper, B.W., Yin, Y., Gorman, S., and Wahl, G.M. (1991). A central role for chromosome breakage in gene amplification, deletion formation, and amplicon integration. Genes & Dev. 5, 160-174.
40. Wright, J.A., Smith, H.S., Watt, F.M., Hancock, M.C., Hudson, D.L., and Stark, G.R. (1990). DNA amplification is rare in normal human cells. Proc. Natl. Acad. Sci. USA 87, 1791-1795.
41. Yin, Y., Tainsky, M.A., Bischoff, F.Z., Strong, L.C., and Wahl, G.M. (1992). Wild-type p53 restores cell cycle control and inhibits gene amplification in cells with mutant p53 alleles. Cell 70, 937-948.