Arbitrarily primed-PCR based diversity assessment reflects hierarchical groupings of Indian tetraploid wheat genotypes

Theoretical and Applied Genetics

Volumn 99, Issue 5, 1999, Pages 868-876

  Pujar, S ^a   Tamhankar, S A ^a   Rao, V S ^a   Gupta, V S ^b   Naik, S ^b   Ranjekar, P K ^b  

^a AGHARKAR RESEARCH INSTITUTE   (India)

^b NATIONAL CHEMICAL LABORATORY   (India)

Author keywords

Genetic diversity; RAPD; Tetraploid wheat

Indexed keywords

CULTIVAR; GENETIC DIVERSITY; GENOTYPE; PLANT GENETICS; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA;

TRITICUM ARARATICUM; TRITICUM TIMOPHEEVII;

EID: 0032852910     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051307     Document Type: Article

References (46)

1. Armstrong J, Gibbs A, Peakall R, Weiller G (1994) The RAPDistance Package' http://life.anu.edu.au/molecular/software/rapd. html
2. Asins MJ (1983) Genetic and phylogenetic studies in diploid and tetraploid species of genus Triticum by analysis of peroxidase and phosphatase isozymes. PhD thesis, Universidad Complutense, Madrid
3. Asins MJ, Carbonell EA (1986) A comparative study of variability and phylogeny of Triticum species. 1. Intraspecific variability. Theor Appl Genet 72 : 551-558
4. Asins MJ, Carbonell EA (1989) Distribution of genetic variability in a durum wheat world collection. Theor Appl Genet 77: 287-294
5. Autrique E, Nachit MM, Monneveux P, Tanksley SD, Sorrells ME (1996) Genetic diversity in durum wheat based on RFLPs, morphophysiological traits and coefficient of parentage. Crop Sci 36:735-742
6. Bekele E (1985) The biology of cereal landrace populations. Hereditas 103: 119-134
7. Branlard G, Autran JC, Monneveux P (1989) High molecular weight glutenin subunit in durum wheat (T. durum). Theor Appl Genet 78 : 353-358
8. Brown-Guedira GL, Badaeva ED, Gill BS, Cox TS (1996) Chromosome substitutions of Triticum timopheevi in common wheat and some observations on the evolution of polyploid wheat species. Theor Appl Genet 93: 1291-1298
9. Castagna R, Gnocchi S, Perenzin M, Heun M (1997) Genetic variability of the wild diploid wheat Triticum urartu revealed by RFLP and RAPD markers. Theor Appl Genet 94:424-430
10. Chen HB, Martin JM, Lavin M, Talbert LE (1994) Genetic diversity in hard red spring wheat based on sequence tagged site PCR markers. Crop Sci 34 :1628-1632
11. Demeke T, Adams RP, Chibbar RN (1992) Potential taxonomic use of random amplified polymorphic DNA (RAPD): a case study in Brassica. Theor Appl Genet 84:990-994
12. Deodikar GB, Patil VP, Rao VSP (1979) Breeding of Indian durum and dicoccum wheats by interspecific hybridization with 4n Triticum species. Indian J Genet 39 : 114-125
13. Eastwood RF, Lagudah ES, Appels R (1994) A directed search for DNA sequences tightly linked to cereal cyst nematode resistance genes in Triticum tauschii. Genome 37: 311-319
14. Feldman M (1976) Wheats. In: Simmonds NW (ed) Evolution of crop plants. Longman, London, pp 120-128
15. Felsenstein J (1993), PHYLIP -phylogenetic inference package (version 3.2) Cladistics 5: 164-166
16. Flavell RB, Smith DB (1976) Nucleotide sequence organization in wheat genome. Heredity 37: 231-252
17. Harcourt RL, Gale MD (1991) A chromosome specific DNA sequence which reveals a high level of RFLP in wheat. Theor Appl Genet 81: 397-400
18. Howell EC, Newbury HJ, Swennen RL, Withers LA, Ford-Lloyd BV (1994) The use of RAPD for identifying and classifying Musa germplasm. Genome 37: 328-332
19. Jaccard P (1908) Nouvelles recherchessur la distributionflorale. Bull Soc Vaud Sci Nat 4: 223-270
20. Jiang J, Gill BS (1994) Different species-specific chromosome translocations in Triticum timopheevi and Triticum turgidum support the diphyletic origin of polyploid wheats. Chromo Res 2: 59-64
21. Joshi CP, Nguyen HT (1993a) Application of random amplified polymorphic DNA technique for the detection of polymorphism among wild and cultivated tetraploid wheats. Genome 36: 602-609
22. Joshi CP, Nguyen HT (1993b) RAPD (random amplified polymorphic DNA) analysis based on intervarietal genetic relationships among hexaploid wheats. Plant Sci 93: 95-103
23. Kazan K, Manners JM, Cameron DF (1993) Genetic variation in agronomically important species of Stylosanthes determined using random amplified polymorphic DNA markers. Theor Appl Genet 85: 882-888
24. Kimber G, Feldman M (1987) Wild wheat-an Introduction. Special Report 353. Univiversity of Missouri, Columbia, Mo., USA
25. Liu C-Y, Shepherd KW (1996) Variation of B subunits of glutenin in durum, wild and less-widely cultivated tetraploid wheats. Plant Breed 115 : 172-178
26. May CE, Appels R (1987) Variability and genetics of spacer DNA sequences between the ribosomal RNA genes of hexaploid wheat (Triticum aestivum). Theor Appl Genet 74: 617-624
27. Metakovsky EV, Kudrayvtsev AM, lakobashvili ZA, Novoselskaya A-Yu (1989) Analysis of phylogenetic relations of durum, carthlicum and common wheats by means of comparison of alleles of gliadin coding loci. Theor Appl Genet 77 : 881-887
28. Mori N, Liu YG, Tsunewaki K (1995) Wheat phytogeny determined by RFLP analysis of nuclear DNA. 2. Wild tetraploid wheats. Theor Appl Genet 90: 129-134
29. Mori N, Moriguchi T, Nakamura C (1997) RFLP analysis of nuclear DNA for study of phylogeny and domestication of tetraploid wheat. Genes Genet Syst 72: 153-161
30. Nagaoka T, Ogihara Y (1997) Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor Appl Genet 94 : 597-602
31. Naik S, Gill KS, Prakasa Rao VS, Gupta VS, Tamhankar SA, Pujar S, Gill BS, Ranjekar PK (1998) Identification of a STS marker linked to the Aegilops speltoides-denved leaf rust resistance gene Lr28 in wheat. Theor Appl Genet 97: 435-440
32. Ogihara Y, Tsunewaki K (1988) Diversity and evolution of chloroplast DNA in Triticum and Aegilops as revealed by restriction fragment analysis. Theor Appl Genet 76: 321-332
33. Penner G (1996) RAPD analysis of plant genomes In: Jauher PP (ed) Methods of genome analysis in plants. CRC press, Baton Roca, Fla., pp 251-268
34. Ranjekar PK, Pallotta D, Lafontaine JG (1976) Analysis of the genome of plants. II. Characterization of repetitive DNA in barley (Hordeum vulgare) and wheat (Triticum aestivum). Biochim Biophys Acta 425 : 30-40
35. Rogers SO, Bendich AJ (1985) Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol Biol 5: 69-76
36. Sneath PHA, Sokal RR (1973) In: Numerical taxonomy. Freeman Co, San Francisco
37. Sun Q, Ni Z, Liu Z, Gao J, Huang T (1998) Genetic relationships and diversity among Tibetian wheat, common wheat and European spelt wheat revealed by RAPD markers. Euphytica 99: 205-211
38. Tsegaye S (1996) Estimation of outcrossing rate in landraces of tetraploid wheat (Triticum turgidum L.) Plant Breeding 115:195-197
39. Tsunewaki K (1995) Plasmon differentiation in Triticum and Aegilops revealed by the cytoplasmic effects on wheat genome manifestation In: Raup WJ, Gill BS (eds) Classical and molecular cytogenetic analysis. (Proc US-Japan Symp). Kan Agric Exp Sta Rep 95: 352-D, pp 38-48
40. Vierling RA, Nguyen HT (1992) Use of RAPD markers to determine the genetic diversity of diploid wheat genotypes. Theor Appl Genet 84:835-838
41. Virk PS, Ford-Lloyd BV, Jackson TM, Newbury HJ (1995) Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74: 170-179
42. Wei Jun-Zhi, Wang RRC (1995) Genome-and species-specific markers and genome relationships of diploid perennial species in Triticeae based on RAPD analyses. Genome 38: 1230-1236
43. Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitary primers Nucleic Acids Res 18:7213-7217
44. Wilkie SE, Isaac PG, Slater RJ (1993) Random amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium. Theor Appl Genet 86: 497-504
45. Williams JGK, Hanafey MK, Rafalski JA, Tingey SV (1993) Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol 218: 704-740
46. Williams JGK, Kubelik A, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitary primers are useful as genetic markers. Nucleic Acids Res 18 : 6531-6535