NMR exchange broadening arising from specific low affinity protein self-association: Analysis of nitrogen-15 nuclear relaxation for rat CD2 domain 1

Journal of Biomolecular NMR

Volumn 14, Issue 4, 1999, Pages 307-320

  Pfuhl, Mark ^a   Chen, Ho A ^a   Kristensen, Søren M ^b   Driscoll, Paul C ^a,c  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c LUDWIG INSTITUTE FOR CANCER RESEARCH   (United Kingdom)

Author keywords

CD2; Crystal contacts; Exchange broadening; Nuclear relaxation; Self association

Indexed keywords

AMIDE; CD2 ANTIGEN;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ANIMAL EXPERIMENT; ANISOTROPY; ARTICLE; BINDING AFFINITY; CONCENTRATION (PARAMETERS); CORRELATION FUNCTION; MOLECULAR DYNAMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN CONFORMATION; PROTEIN STRUCTURE; RAT;

ANIMALS; ANTIGENS, CD2; DIMERIZATION; MAGNETIC RESONANCE SPECTROSCOPY; NITROGEN; RATS;

EID: 0032852490     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008319917267     Document Type: Article

References (65)

1. Akke, M. and Palmer, A.G. (1996) J. Am. Chem. Soc., 118, 911-912.
2. Akke, M., Liu, J., Cavanagh, J., Erickson, H.P. and Palmer, A.G. (1998) Nat. Struct. Biol., 5, 55-59.
3. Banci, L., Felli, I. and Koulougliotis, D. (1998) J. Biomol. NMR, 12, 307-318.
4. Barbato, G., Ikura, M., Kay, L. E., Pastor, R. W. and Bax, A. (1992) Biochemistry, 31, 5269-5278.
5. Bartels, C., Xia, T.-H., Billeter, M., Güntert, P. and Wüthrich, K. (1995) J. Biomol. NMR, 6, 1-10.
6. Biekofsky, R.R., Martin, S.R., Browne, J.P., Bayley, P.M. and Feeney, J. (1998) Biochemistry, 37, 7617-7629.
7. Bodian, D.L., Jones, E.Y., Harlos, K., Stuart, D.I., and Davis, S.J. (1994) Structure, 2, 755-766.
8. Boucher, W. (1995) AZARA v1.0, Department of Biochemistry, University of Cambridge, U.K.
9. Brunger, A.T. (1993) XPLOR.v.31, Yale University, New Haven, CT.
10. Chen, H.A., Pfuhl, M., Davis, B. and Driscoll, P.C. (1998) J. Biomol. NMR, 12, 457-458.
11. Chen, H.A., Pfuhl, M., McAlister, M. S.B. and Driscoll, P.C. (1999) submitted.
12. Clore, G.M., Driscoll, P.C., Wingfield, P.T. and Gronenborn, A.M. (1990) Biochemistry, 29, 7387.
13. Clore, G.M., Szabo, A., Bax, A., Kay, L.E., Driscoll, P.C. and Gronenborn, A.M. (1990) J. Am. Chem. Soc., 112, 4989-4991.
14. Crawford, D. A. (1994) Structure and Dynamics of a Cell Adhesion Protein, Ph.D. Thesis, Oxford University, Oxford.
15. Davis, S.J., Ikemizu, S., Wild, M.K. and van der Merwe, P.A. (1998) Immunol. Rev., 163, 217-236.
16. Dayie, K.T., Wagner, G. and Lefèvre, J.F., In Dynamics and the Problem of Recognition in Biological Macromolecules, Nato ASI Series A, Vol. 288, Plenum Press, New York, NY, pp. 139-162.
17. de la Torre, J.G. and Bloomfield, V.A. (1981) Q. Rev. Biophys., 14, 81-139.
18. de la Torre, J.G., Navarro, S., Martinez, M.C.L., Diaz, F.G. and Cascales, J.J.L. (1994) Biophys. J., 67, 530-531.
19. Delaglio, F., Gzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. (1995) J. Biomol. NMR, 6, 277-293.
20. Driscoll, P.C., Cyster, J.G., Campbell, I.D. and Williams, A.F. (1991) Nature, 353, 762-765.
21. Driscoll, P.C., Cyster, J.G., Somoza, C., Crawford, D.A., Howe, R, Harvey, T.S., Kieffer, B., Campbell, I.D. and Williams, A.F. (1993) Biochem. Soc. Trans., 21, 947-952.
22. Duan, Y., Wang, L. and Kollman, P.A. (1998) Proc. Natl. Acad. Sci. USA, 95, 9897-9902.
23. Evans, P.A., Kautz, R.A., Fox, R.O. and Dobson, C.M. (1989) Biochemistry, 28, 362-370.
24. Fushman, D., Cahill, S. and Cowburn, D. (1998) J. Mol. Biol., 266, 173-194.
25. Gryk, M.R., Abseher, R., Simon, B., Nilges, M. and Oschkinat, H. (1998) J. Mol. Biol., 280, 879-896.
26. Grzesiek, S., Bax, A., Hu, J.-S., Kaufman, J., Palmer, I., Stahl, S.J., Tjandra, N. and Wingfield, P. (1997) Protein Sci., 6, 1248-1261.
27. Jardetzky, O. (1996) Prog. Biophys. Mol. Biol., 65, 171-218.
28. Jones, E.Y, Davis, S.J., Williams, A.F., Harlos, K. and Stuart, D.I. (1992) Nature, 360, 232-239.
29. Kay, L.E. (1998) Nat. Struct. Biol., 5, 513-517.
30. Kay, L.E., Torchia, D.A. and Bax, A. (1989) Biochemistry, 28, 8972-8979.
31. Kay, L.E., Keifer, P. and Saarinen, T. (1992) J. Am. Chem. Soc., 114, 10663.
32. Kay, L.E., Nicholson, L.K., Delaglio, F., Bax, A. and Torchia, D.A. (1992) J. Magn. Reson., 97, 359-367.
33. Kieffer, B. and Driscoll, P.C. (1992) unpublished observations.
34. Kraulis, P.J. (1989) J. Magn. Reson., 24, 627-633.
35. Krishnan, V.V. and Cosman, M. (1998) J. Biomol NMR, 12, 177-182.
36. Lane, A.N. and Lefèvre, J.-F. (1995) Methods Enzymol., 239, 596-619.
37. Le, H. and Oldfield, E. (1994) J. Biomol. NMR, 4, 341-348.
38. Le, H.B. and Oldfield, E. (1996) J. Phys. Chem., 100, 16423-16428.
39. Lee, L.K., Rance, M., Chazin, W.J. and Palmer, A.G. (1997) J. Biomol. NMR, 9, 287-298.
40. LeMaster, D.M. and Kushlan, D.M. (1996) J. Am. Chem. Soc., 118, 9255-9264.
41. Lipari, G. and Szabo, A. (1982a) J. Am. Chem. Soc., 104, 4546-4559.
42. Lipari, G. and Szabo, A. (1982b) J. Am. Chem. Soc., 104, 4559-4570.
43. Luz, Z. and Meiboom, S. (1963) J. Chem. Phys., 39, 366-370.
44. Mandel, A.M., Akke, M. and Palmer, A.G. (1995) J. Mol. Biol., 246, 144-163.
45. McAlister, M.S.B., Mott, H.R., van der Merwe, P.A., Campbell, I.D., Davis, S.J. and Driscoll, P.C. (1996) Biochemistry, 35, 5982-5991.
46. Mulder, F.A.A., de Graaf, R.A., Kaptein, R. and Boelens, R. (1998) J. Magn. Reson., 131, 351-357.
47. Otting, G., Liepinsh, E. and Wüthrich, K. (1993) Biochemistry, 32, 3571-3582.
48. Palmer, A.G., Cavanagh, J., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 93, 151-170.
49. Palmer, A.G., Williams, J. and McDermott, A. (1996) J. Phys. Chem., 100, 13293-13310.
50. Peng, J.W. and Wagner, G. (1992) J. Magn. Reson., 98, 308-332.
51. Silkowski, H., Davis, S.J., Barcley, A.N., Rowe, A.J., Harding, S.E. and Byron, O. (1997) Eur. Biophys. J., 25, 455-462.
52. States, D.J., Haberkorn, R.A. and Ruben, D.J. (1982) J. Magn. Reson., 48, 286-292.
53. Szyperski, T., Luginbühl, P., Otting, G. and Wüthrich, K. (1993) J. Biomol. NMR, 3, 151-164.
54. Tjandra, N., Feller, S.E., Pastor, R.W. and Bax, A. (1995) J. Am. Chem. Soc., 117, 12562-12566.
55. Tjandra, N., Wingfield, P., Stahl, S. and Bax, A. (1996) J. Biomol. NMR, 8, 273-284.
56. van der Merwe, P.A. (1993) personal communication.
57. Volkman, B.F., Alam, S.L., Satterlee, J.D. and Markley, J.L. (1998) Biochemistry, 37, 10906-10919.
58. Weber, G. (1992) Protein Interactions, Chapman and Hall, New York, NY.
59. Woessner, D.E. (1962) J. Chem. Phys., 37, 647-654.
60. Wolfram, S. (1998) Mathematica - A System for Doing Mathematics by Computer, 2.0 edition, Wolfram Research Inc., Champaign, IL.
61. Wong, K.-B., Fersht, A.R. and Freund, S.M.V. (1997) J. Mol. Biol., 258, 494-511.
62. Wyss, D.F., Dayie, K.T. and Wagner, G. (1997) Protein Sci., 6, 534-542.
63. Yang, D. and Kay, L.E. (1996) J. Mol. Biol., 263, 369-382.
64. Zhang, W.X., Smithgall, T.E. and Gmeiner, W.H. (1998) Biochemistry, 37, 7119-7126.
65. Zinn-Justin, S., Berthault, P., Guenneugues, M. and Desvaux, H. (1997) J. Biomol. NMR, 10, 363-372.