Lack of hotspot targets: A constraint for IS30 transposition in Salmonella

Gene

Volumn 238, Issue 1, 1999, Pages 231-239

  Casadesus J ^a   Naas, T ^b   Garzon A ^a   Arini, A ^b   Torreblanca, J ^a   Arber, W ^b  

^a UNIVERSITY OF SEVILLE   (Spain)

^b UNIVERSITY OF BASEL   (Switzerland)

Author keywords

Bacterial genome; DNA composition; Horizontal transfer; Insertion elements

Indexed keywords

ANTIBIOTIC AGENT; DNA FRAGMENT;

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; GENE INSERTION; GENOME; NONHUMAN; PRIORITY JOURNAL; SALMONELLA TYPHIMURIUM; TRANSPOSON;

BACTERIOPHAGE T4; BASE SEQUENCE; DNA PRIMERS; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; ESCHERICHIA COLI; GENOME, BACTERIAL; POLYMERASE CHAIN REACTION; SALMONELLA TYPHIMURIUM; TRANSDUCTION, GENETIC; TRANSPOSASES;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HUMULUS LUPULUS; SALMONELLA; SALMONELLA TYPHIMURIUM; TYPHIMURIUM; UNIDENTIFIED BACTERIOPHAGE;

EID: 0032849706     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00256-5     Document Type: Article

References (52)

1. Arber W., Iida S., Jütte H, Caspers P., Hänni C. Rearrangements of genetic material in Escherichia coli as observed in the P1 plasmid. Cold Spring Harbor Symp. Quant. Biol. 43:1978;1197-1208.
2. Berg D.E., Schmand M.A., Lowe J.B. Specificity of transposon Tn5 insertion. Genetics. 105:1983;813-828.
3. Beuzón C.R., Casadesús J. Conserved structure of IS200 elements in Salmonella. Nucleic Acids Res. 25:1997;1355-1361.
4. Birkenbihl R.P., Vielmetter W. Complete maps of IS1, IS2, IS3, IS4, IS5, IS30 and IS150 locations in Escherichia coli K12. Mol. Gen. Genet. 220:1989;147-153.
5. Bisercic M., Ochman H. Natural populations of Escherichia coli and Salmonella typhimurium harbor the same classes of insertion sequences. Genetics. 133:1993;449-454.
6. Bisercic M., Ochman H. The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium. J. Bacteriol. 175:1993;7863-7868.
7. Boyd J.S.K., Bidwell D.E. The Q1(A) strains of Salmonella typhimurium: induction phenomenon. J. Gen. Microbiol. 21:1959;635-651.
8. Casadesús J., Roth J.R. Absence of insertions among spontaneous mutants of Salmonella typhimurium. Mol. Gen. Genet. 216:1989;210-216.
9. Casjens S., Hayden M. Analysis in vivo of the bacteriophage P22 headful nuclease. J. Mol. Biol. 199:1988;467-474.
10. Caspers P., Darlymple B., Iida S., Arber W. IS30, a new insertion sequence of Escherichia coli K12. Mol. Gen. Genet. 196:1984;68-73.
11. Chan R.K., Botstein D., Watanabe T., Ogata Y. Specialized transduction of tetracycline by phage P22 in Salmonella typhimurium. II. Properties of a high frequency transducing lysate. Virology. 50:1972;883-898.
12. Conlin C.A., Vimr E.R., Miller C.G. Oligopeptidase A is required for normal phage P22 development. J. Bacteriol. 174:1992;5869-5880.
13. Contreras A., Casadesús J. Tn10 mutagenesis in Azotobacter vinelandii. Mol. Gen. Genet. 209:1987;276-282.
14. Dalrymple B., Caspers P., Arber W. Nucleotide sequence of the prokaryotic mobile genetic element IS30. EMBO J. 3:1984;2145-2149.
15. Del Sal G., Manfioletti G., Schneider C. The CTAB precipitation method: a common mini-scale preparation of template DNA from phagemids, phages or plasmids suitable for sequencing. BioTechniques. 7:1989;514-519.
16. Donnenberg M.S., Kaper J.B. Construction of an eae deletion mutant of enteropathogenic Escherichia coli by using a positive-selection suicide vector. Infect. Immun. 59:1991;4310-4317.
17. Elliott T., Roth J.R. Characterization of Tn10d-Cam: a transposition-defective Tn10 specifying chloramphenicol resistance. Mol. Gen. Genet. 213:1988;332-338.
18. Foster T., Davis M.A., Takeshita K., Roberts D.E., Kleckner N. Genetic organization of transposon Tn10. Cell. 23:1981;201-213.
19. Galas D.J., Chandler M. Bacterial insertion sequences. Berg D.E., Howe M.M. Mobile DNA. 1989;109-162 American Society for Microbiology, Washington, DC.
20. Garzón A., Cano D.A., Casadesús J. Role of Erf recombinase in P22-mediated plasmid transduction. Genetics. 140:1995;427-434.
21. Hall B.G., Parker L.L., Betts P.W., DuBose R.F., Sawyer S.A., Hartl D.L. IS103: a new insertion element in Escherichia coli. Characterization and distribution in natural populations. Genetics. 121:1989;423-431.
22. Halling S.M., Kleckner N. A symmetrical six-base-pair target site sequence determines Tn10 insertion specificity. Cell. 28:1982;155-163.
23. Inoue H., Nojima H., Okayama H. High efficiency transformation of Escherichia coli with plasmids. Gene. 93:1990;26-28.
24. Kasahara M., Nakata A., Shiganawa H. Molecular analysis of the Salmonella typhimurium phoN gene, which encodes nonspecific acid phosphatase. J. Bacteriol. 173:1991;6760-6765.
25. Kohno T., Roth J.R. Electrolyte effects on the activity of mutant enzymes in vivo and in vitro. Biochemistry. 18:1979;1386-1392.
26. Lawrence J.G., Ochman H., Hartl D.L. The evolution of insertion sequences within enteric bacteria. Genetics. 131:1992;9-20.
27. Lawrence J.G., Ochman H. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44:1997;383-397.
28. Lederberg E.M., Cohen S.N. Transformation of Salmonella typhimurium by plasmid deoxyribonucleic acid. J. Bacteriol. 119:1974;1072-1074.
29. Lichtenstein C., Brenner S. Unique insertion site of Tn7 in the E. coli chromosome. Nature. 297:1982;601-603.
30. Mahillon J., Chandler M. Insertion sequences. Microbiol. Mol. Biol. Rev. 62:1998;725-774.
31. McKown R., Orle K.A., Chen T., Craig N.L. Sequence requirements of Escherichia coli attTn7, a specific site of transposon Tn7 insertion. J. Bacteriol. 170:1988;352-358.
32. Maloy S.R. Experimental Techniques in Bacterial Genetics. 1990;Jones and Bartlett Publishers, Boston, MA.
33. Miller V.L., Mekalanos J.J. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol. 170:1988;2575-2583.
34. Naas, T., 1994. DNA rearrangements mediated by mobile genetic elements in Escherichia coli. Ph.D. thesis, University of Basel, Switzerland.
35. Olasz F., Farkas T., Kiss J., Arini A., Arber W. Terminal repeats of insertion sequence IS30 serve as targets for transposition. J. Bacteriol. 179:1997;7551-7558.
36. Olasz F., Kiss J., König P., Buzás Z., Stalder R., Arber W. Target specificity of insertion element IS30. Mol. Microbiol. 28:1998;691-704.
37. 2 and its role in IS30-mediated transpositional DNA rearrangements. Mol. Gen. Genet. 239:1993;177-187.
38. Pridmore R.D. New and versatile cloning vectors with kanamycin-resistance marker. Gene. 56:1987;309-312.
39. Roth J., Schmid M.B. Arrangement and rearrangement of the bacterial chromosome. Stadler Genet. Symp. 13:1981;53-70.
40. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning. 2nd edition :1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
41. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
42. Sawyer S., Dykhuizen D., DuBose R., Green L., Mutangadura-Mhlanga T., Wolczyk D., Hartl D. Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. Genetics. 115:1987;51-63.
43. Schmieger H. Phage P22 mutants with increased or decreased transducing abilities. Mol. Gen. Genet. 119:1972;75-88.
44. Sengstag C., Arber W. IS2 insertion is a major cause of spontaneous mutagenesis of the bacteriophage P1: non-random distribution of target sites. EMBO J. 2:1983;67-71.
45. Shand R.F., Blum P.H., Holzschu D.L., Urdea M.S., Artz S.W. Mutational analysis of the histidine operon promoter of Salmonella typhimurium. J. Bacteriol. 171:1989;6330-6337.
46. Stalder R., Arber W. Characterization of in vitro constructed IS30-flanked transposons. Gene. 76:1989;187-193.
47. Stalder R., Caspers P., Olasz F., Arber W. The N-terminal domain of the insertion sequence 30 transposase interacts specifically with the terminal inverted repeats of the element. J. Biol. Chem. 265:1990;3757-3762.
48. Tu C.P., Cohen S.N. Translocation specificity of the Tn3 element: characterization of sites of multiple insertions. Cell. 19:1980;151-160.
49. Umeda M., Othsubo E. Mapping of insertion element IS30 in the Escherichia coli K12 chromosome. Mol. Gen. Genet. 222:1990;317-322.
50. Vogel H., Bonner D. Acetylornithase of Escherichia coli: partial purification and some properties. J. Biol. Chem. 218:1956;97-106.
51. Yanisch-Perron V., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 33:1985;103-119.
52. Zinder N. Lysogenization and superinfection immunity in Salmonella. Virology. 5:1958;291-326.