Molecular characterization of genes in the GP41 region of baculoviruses and phylogenetic analysis based upon GP41 and polyhedrin genes

Virus Research

Volumn 64, Issue 2, 1999, Pages 187-196

  Liu, Jaw Ching ^a   Maruniak, James E ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

Baculovirus; Genome organization; gp41; Phylogenetics; Polyhedrin

Indexed keywords

POLYHEDRIN;

AMINO ACID SEQUENCE; ARTICLE; BACULOVIRUS; GENE MUTATION; GENETIC ORGANIZATION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; VIRUS GENOME;

AMINO ACID SEQUENCE; ANIMALS; BACULOVIRIDAE; CAPSID; CELL LINE; LEPIDOPTERA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POINT MUTATION; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL ENVELOPE PROTEINS; VIRAL PROTEINS;

ANTICARSIA GEMMATALIS; ANTICARSIA GEMMATALIS MULTIPLE NUCLEOPOLYHEDROVIRUS; ANTICARSIA GEMMATALIS NUCLEOPOLYHEDROVIRUS; AUTOGRAPHA CALIFORNICA; AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; BOMBYX MORI; DNA VIRUSES; HELICOVERPA ZEA; LYMANTRIA DISPAR; ORGYIA PSEUDOTSUGATA; SPODOPTERA FRUGIPERDA; SPODOPTERA FRUGIPERDA MNPV; UNIDENTIFIED BACULOVIRUS; ZEA;

EID: 0032843153     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(99)00094-5     Document Type: Article

References (37)

1. Ahrens C.H., Rohrmann G.F. The DNA polymerase and helicase of a baculovirus of Orgyia pseudotsugata. J. Gen. Virol. 77:1996;825-837.
2. Ahrens C.H., Russell R.L., Funk C.J., Evans J.T., Harwood S.H., Rohrmann G.F. The sequence of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus genome. J. Virol. 229:1997;381-399.
3. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
4. Barret J.W., Krell P.J., Arif B.M. Characterization, sequencing and phylogeny of the ecdysteroid UDP-glucosyltransferase gene from two distinct nuclear polyhedrosis viruses isolated from Choristoneura fumiferana. J. Gen. Virol. 76:1995;2456-2477.
5. Benner S.A. Predicting the conformation of proteins from sequences. Progress and future progress. J. Mol. Recog. 8:1995;9-28.
6. Bulach D.M., Kumar C.A., Zaia A., Liang B., Tribe D.E. Group II nucleopolyhedrovirus subgroups revealed by phylogenetic analysis of polyhedrin and DNA polymerase gene sequences. J. Invertebr. Pathol. 73:1999;59-73.
7. Corsaro B.G., Fraser M.J. Characterization of genotypic and phenotypic variation in plaque-purified strains of HzSNPV Elkar isolate. Intervirology. 28:1987;185-198.
8. Cowan P., Bulach D., Goodge K., Robertson A., Tribe D.E. Nucleotide sequence of the polyhedrin gene region of Helicoverpa zea single nucleocapsid nuclear polyhedrosis virus: placement of the virus in lepidopteran nuclear polyhedrosis virus group II. J. Gen. Virol. 75:1994;3211-3218.
9. Federici B.A., Hice R.H. Organization and molecular characterization of genes in the polyhedrin region of the Anagrapha falcifera multinucleocapsid NPV. Arch. Virol. 142:1997;333-348.
10. Hansen J.E., Lund O., Engelbrecht J., Bohr H., Nielsen J.O., Hansen J.-E.S., Brunak S. Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAC: polypeptide N-acetylgalactosaminyltransferase. Biochem. J. 308:1995;801-813.
11. Johnson D.W., Maruniak J.E. Physical map of Anticarsia gemmatalis nuclear polyhedrosis virus (AgMNPV-2) DNA. J. Gen. Virol. 70:1989;1877-1883.
12. Jones D. Threader 2: Protein Fold Recognition by Optimal Protein Sequence Threading. 1996;University of Warwick, Coventry, UK.
13. Jones D.T., Taylor W.R., Thornton J.M. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry. 33:1994;3038-3049.
14. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
15. Knell J.D., Summers M.D. A physical map for the Heliothis zea SNPV genome. J. Gen. Virol. 65:1984;445-450.
16. Kool M., Broer R., Zuidema D., Goldbach R.W., Vlak J.M. Nucleotide sequence and genetic organization of a 7.3 kb region (map unit 47 to 52.5) of Autographa californica nuclear polyhedrosis virus fragment EcoRI-C. J. Gen. Virol. 75:1994;487-494.
17. Kozak M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell. 44:1986;283-292.
18. Kumar S., Tamura K., Nei M. MEGA: Molecular Evolutionary Genetics Analysis, Version 1.01. 1993;The Pennsylvania State University, University Park, PA 16802.
19. Kuzio J., Pearson M.N., Harwood S.H., Funk C.J., Evans J.T., Slavicek J.M., Rohrmann G.F. Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar. Virology. 253:1999;17-34.
20. Li W.H. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:1993;96-99.
21. Li W.H. Molecular Evolution. 1997;Sinauer Associates, Inc, Sunderland, MA.
22. Liu J.-C., Maruniak J.E. Nucleotide sequence and transcriptional analysis of the gp41 gene of Spodoptera frugiperda nuclear polyhedrosis. J. Gen. Virol. 76:1995;1443-1450.
23. Luckow V.A., Summers M.D. Signals important for high-level expression of foreign genes in Autographa californica nuclear polyhedrosis virus expression vectors. Virology. 167:1988;56-71.
24. Ma S.-W., Corsaro B.G., Klebba P.E., Fraser M.J. Cloning and sequence analysis of a p40 structural protein gene of Helicoverpa zea nuclear polyhedrosis virus. Virology. 192:1993;224-233.
25. Maruniak, J.E., 1979. Biochemical characterization of baculovirus structural and infected TN-386 cell polypeptides, glycoproteins and phosphoproteins, PhD dissertation, University of Texas, Austin.
26. McLachlin J.R., Miller L.K. Identification and characterization of vlf-1, a baculovirus gene involved in very late gene expression. J. Virol. 68:1994;7746-7756.
27. Nagamine T., Sugimori H., Nakamura K., Saga S., Kobayashi M. Nucleotide sequence of the gene coding for p40, an occluded virion-specific polypeptide of Bombyx mori nuclear polyhedrosis virus. J. Invertebr. Pathol. 58:1991;290-293.
28. Olszewski J., Miller L.K. A role for baculovirus gp41 in budded virus production. Virology. 233:1997;292-301.
29. Pellock B.J., Lu A., Meagher R.B., Weise M.J., Miller L.K. Sequence, function, and phylogenetic analysis of an ascovirus DNA polymerase gene. Virology. 216:1996;146-157.
30. Rohrmann G.F. Polyhedrin structure. J. Gen. Virol. 67:1986;1499-1513.
31. Rohrmann G.F., Pearson M.N., Bailey T.J., Becker R.R., Beaudreau G.S. N-Terminal polyhedrin sequences and occluded baculovirus evolution. J. Mol. Evol. 17:1981;329-333.
32. Rost B., Sander C. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232:1993;584-599.
33. Smith G.E., Summers M.D. DNA homology among subgroup A, B, and C, baculoviruses. Virology. 123:1982;393-406.
34. Swofford D.L. PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1. 1993;Illinois Natural History Survey, Champaign, IL.
35. Whitford M., Faulkner P. A structural polypeptide of the baculovirus Autographa californica nuclear polyhedrosis virus contains O-linked N-acetylglucosamine. J. Virol. 66:1992;3324-3329.
36. Zanotto P.M.A. de, Kessing B.D., Maruniak J.E. Phylogenetic interrelationships among baculoviruses: evolutionary rates and host associations. J. Invertebr. Pathol. 62:1993;147-164.
37. Zanotto P.M.A. de, Sampaio M.J.A., Johnson D.W., Rocha T.L., Maruniak J.E. The Anticarsia gemmatalis nuclear polyhedrosis virus polyhedrin gene region: sequence analysis, gene product and structural comparisons. J. Gen. Virol. 73:1992;1049-1056.