-
1
-
-
0032534759
-
Structures of the psychrophilic Alteromonas haloplanctis α-amylase give insights into cold adaptation at a molecular level
-
Aghajari, N., G. Feller, C. Gerday, and R. Haser. 1998. Structures of the psychrophilic Alteromonas haloplanctis α-amylase give insights into cold adaptation at a molecular level. Structure 6:1503-1516.
-
(1998)
Structure
, vol.6
, pp. 1503-1516
-
-
Aghajari, N.1
Feller, G.2
Gerday, C.3
Haser, R.4
-
2
-
-
0030924747
-
Cold adaptation parameters derived from cDNA sequencing and molecular modeling of elastase from Antarctic fish Notothenia neglecta
-
Aittaleb, M., R. Hubner, J. Lamotte-Brasseur, and C. Gerday. 1997. Cold adaptation parameters derived from cDNA sequencing and molecular modeling of elastase from Antarctic fish Notothenia neglecta. Protein Eng. 10: 475-477.
-
(1997)
Protein Eng.
, vol.10
, pp. 475-477
-
-
Aittaleb, M.1
Hubner, R.2
Lamotte-Brasseur, J.3
Gerday, C.4
-
3
-
-
0031941134
-
Triose-phosphate isomerase (TIM) of the psychrophilic bacterium Vibrio marinus. Kinetic and structural properties
-
Alvarez, M., J. P. Zeelen, V. Mainfroid, F. Rentier-Delrue, J. A. Martia, L. Wyns, R. K. Wierenga, and D. Maes. 1998. Triose-phosphate isomerase (TIM) of the psychrophilic bacterium Vibrio marinus. Kinetic and structural properties. J. Biol. Chem. 273:2199-2206.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2199-2206
-
-
Alvarez, M.1
Zeelen, J.P.2
Mainfroid, V.3
Rentier-Delrue, F.4
Martia, J.A.5
Wyns, L.6
Wierenga, R.K.7
Maes, D.8
-
4
-
-
0026769810
-
Structure and function of a 40,000-molecular-weight protein antigen of Mycobacterium tuberculosis
-
Andersen, A. B., P. Andersen, and L. Ljungqvist. 1992. Structure and function of a 40,000-molecular-weight protein antigen of Mycobacterium tuberculosis. Infect. Immun. 60:2317-2323.
-
(1992)
Infect. Immun.
, vol.60
, pp. 2317-2323
-
-
Andersen, A.B.1
Andersen, P.2
Ljungqvist, L.3
-
5
-
-
0018788367
-
Thermal stability and protein structure
-
Argos, P., M. G. Rossman, U. M. Grau, H. Zuber, G. Frank, and J. D. Tratschin. 1979. Thermal stability and protein structure. Biochemistry 18: 5698-5703.
-
(1979)
Biochemistry
, vol.18
, pp. 5698-5703
-
-
Argos, P.1
Rossman, M.G.2
Grau, U.M.3
Zuber, H.4
Frank, G.5
Tratschin, J.D.6
-
6
-
-
0031846232
-
Analysis of the structure and substrate binding of Phormidium lapideum alanine dehydrogenase
-
Baker, P. J., Y. Sawa, H. Shibata, S. E. Sedelnikova, and D. W. Rice. 1998. Analysis of the structure and substrate binding of Phormidium lapideum alanine dehydrogenase. Nat. Struct. Biol. 5:561-567.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 561-567
-
-
Baker, P.J.1
Sawa, Y.2
Shibata, H.3
Sedelnikova, S.E.4
Rice, D.W.5
-
8
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie, J. U., R. Luthy, and D. Eisenberg. 1991. A method to identify protein sequences that fold into a known three-dimensional structure. Science 253: 164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
9
-
-
0022419375
-
Aromatic-aromatic interaction: A mechanism of protein structure stabilization
-
Burley, S. K., and G. A. Petsko. 1995. Aromatic-aromatic interaction: a mechanism of protein structure stabilization. Science 229:23-28.
-
(1995)
Science
, vol.229
, pp. 23-28
-
-
Burley, S.K.1
Petsko, G.A.2
-
10
-
-
0030624199
-
MEGALIGN. the multiple alignment module of LASERGENE
-
Clewley, J. P., and C. Arnold. 1997. MEGALIGN. The multiple alignment module of LASERGENE. Methods Mol. Biol. 70:119-129.
-
(1997)
Methods Mol. Biol.
, vol.70
, pp. 119-129
-
-
Clewley, J.P.1
Arnold, C.2
-
11
-
-
0031052268
-
Enzymes from cold-adapted microorganisms. the class C β-lactamase from the Antarctic psychrophile Psychrobacter immobilis A5
-
Feller, G., Z. Zekhnini, J. Lamotte-Brasseur, and C. Gerday. 1997. Enzymes from cold-adapted microorganisms. The class C β-lactamase from the Antarctic psychrophile Psychrobacter immobilis A5. Eur. J. Biochem. 244:186-191.
-
(1997)
Eur. J. Biochem.
, vol.244
, pp. 186-191
-
-
Feller, G.1
Zekhnini, Z.2
Lamotte-Brasseur, J.3
Gerday, C.4
-
12
-
-
0025781624
-
Psychrotrophic, lactic acid-producing bacteria from anoxic waters in Ace Lake, Antarctica; Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov
-
Franzmann, P. D., P. Hopfl, N. Weiss, and B. J. Tindall. 1991. Psychrotrophic, lactic acid-producing bacteria from anoxic waters in Ace Lake, Antarctica; Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov. Arch. Microbiol. 154:255-262.
-
(1991)
Arch. Microbiol.
, vol.154
, pp. 255-262
-
-
Franzmann, P.D.1
Hopfl, P.2
Weiss, N.3
Tindall, B.J.4
-
13
-
-
0030731779
-
Synthesis of optically-active amino acids from the corresponding α-keto acids with Escherichia coli cells expressing heterologous genes
-
Galkin, A., L. Kulakova, T. Yoshimura, K. Soda, and N. Esaki. 1997. Synthesis of optically-active amino acids from the corresponding α-keto acids with Escherichia coli cells expressing heterologous genes. Appl. Environ. Microbiol. 63:4651-4656.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4651-4656
-
-
Galkin, A.1
Kulakova, L.2
Yoshimura, T.3
Soda, K.4
Esaki, N.5
-
14
-
-
0030699980
-
Psychrophilic enzymes: A thermodynamic challenge
-
Gerday, C., M. Aittaleb, J. L. Arpigny, E. Baise, J. P. Chessa, G. Garsoux, I. Petrescu, and G. Feller. 1997. Psychrophilic enzymes: a thermodynamic challenge. Biochim. Biophys. Acta 1342:119-131.
-
(1997)
Biochim. Biophys. Acta
, vol.1342
, pp. 119-131
-
-
Gerday, C.1
Aittaleb, M.2
Arpigny, J.L.3
Baise, E.4
Chessa, J.P.5
Garsoux, G.6
Petrescu, I.7
Feller, G.8
-
15
-
-
85005697480
-
Dehydrogenase for the synthesis of chiral compounds
-
Hummel, W., and M.-R. Kula. 1989. Dehydrogenase for the synthesis of chiral compounds. Eur. J. Biochem. 184:1-13.
-
(1989)
Eur. J. Biochem.
, vol.184
, pp. 1-13
-
-
Hummel, W.1
Kula, M.-R.2
-
16
-
-
0019287872
-
Thermostability and aliphatic index of globular proteins
-
Ikai, A. 1980. Thermostability and aliphatic index of globular proteins. J. Biochem. 88:1895-1898.
-
(1980)
J. Biochem.
, vol.88
, pp. 1895-1898
-
-
Ikai, A.1
-
17
-
-
0040676433
-
Purification and properties of alanine dehydrogenase from Vibrio proteolyticus
-
In Japanese
-
Kato, S., T. Ohshima, K. Ishihara, A. Galkin, T. Yoshimura, N. Esaki, and K. Soda. 1997. Purification and properties of alanine dehydrogenase from Vibrio proteolyticus. Nihon Nougeikagaku Kaishi. 71:293. (In Japanese.)
-
(1997)
Nihon Nougeikagaku Kaishi.
, vol.71
, pp. 293
-
-
Kato, S.1
Ohshima, T.2
Ishihara, K.3
Galkin, A.4
Yoshimura, T.5
Esaki, N.6
Soda, K.7
-
18
-
-
0032975313
-
Cold-active serine alkaline protease from the psychrotrophic bacterium Shewanella strain Ac10: Gene cloning and enzyme purification and characterization
-
Kolakova, L., A. Galkin, T. Kurihara, T. Yoshimura, and N. Esaki. 1999. Cold-active serine alkaline protease from the psychrotrophic bacterium Shewanella strain Ac10: gene cloning and enzyme purification and characterization. Appl. Environ. Microbiol. 65:611-617.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 611-617
-
-
Kolakova, L.1
Galkin, A.2
Kurihara, T.3
Yoshimura, T.4
Esaki, N.5
-
19
-
-
0025022003
-
Alanine dehydrogenase from two Bacillus species with distinct thermostabilities: Molecular cloning, DNA and protein sequence determination, and structural comparison with other NAD(P)-dependent dehydrogenases
-
Kuroda, S., K. Tanizawa, Y. Sakamoto, H. Tanaka, and K. Soda. 1990. Alanine dehydrogenase from two Bacillus species with distinct thermostabilities: molecular cloning, DNA and protein sequence determination, and structural comparison with other NAD(P)-dependent dehydrogenases. Biochemistry 29:1009-1015.
-
(1990)
Biochemistry
, vol.29
, pp. 1009-1015
-
-
Kuroda, S.1
Tanizawa, K.2
Sakamoto, Y.3
Tanaka, H.4
Soda, K.5
-
20
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
21
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., M. W. MacArthur, D. S. Moss, and J. M. Thornton. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 24:283-291.
-
(1993)
J. Appl. Cryst.
, vol.24
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
22
-
-
0030819820
-
The RDP (Ribosomal Database Project)
-
Maidak, B. L., G. J. Olsen, N. Larsen, R. Overbeek, M. J. McCaughey, and C. R. Woese. 1997. The RDP (Ribosomal Database Project). Nucleic Acids Res. 25:109-111.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 109-111
-
-
Maidak, B.L.1
Olsen, G.J.2
Larsen, N.3
Overbeek, R.4
McCaughey, M.J.5
Woese, C.R.6
-
23
-
-
0030749081
-
Cold-adapted enzymes
-
Marshall, C. J. 1997. Cold-adapted enzymes. Trends Biotechnol. 15:359-364.
-
(1997)
Trends Biotechnol.
, vol.15
, pp. 359-364
-
-
Marshall, C.J.1
-
24
-
-
0023430560
-
Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding
-
Matthews, B. W., H. Nicholson, and W. J. Becktel. 1987. Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc. Natl. Acad. Sci. USA 84:6663-6667.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 6663-6667
-
-
Matthews, B.W.1
Nicholson, H.2
Becktel, W.J.3
-
25
-
-
0024974452
-
Engineering protein thermal stability. Sequence statistics point to residue substitutions in α-helices
-
Menendez-Arias, L., and P. Argos. 1989. Engineering protein thermal stability. Sequence statistics point to residue substitutions in α-helices. J. Mol. Biol. 206:397-406.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 397-406
-
-
Menendez-Arias, L.1
Argos, P.2
-
26
-
-
0016516090
-
Psychrophilic bacteria
-
Morita, R. Y. 1975. Psychrophilic bacteria. Bacteriol. Rev. 39:144-167.
-
(1975)
Bacteriol. Rev.
, vol.39
, pp. 144-167
-
-
Morita, R.Y.1
-
27
-
-
0026597114
-
Arginine residues as stabilizing elements in proteins
-
Mrabet, N. T., A. Van den Broeck, I. Van den Brande, P. Stanssens, Y. Laroche, A. M. Lambeir, G. Matthijssens, J. Jenkins, M. Chiadmi, and H. Van Tilbeurgh. 1992. Arginine residues as stabilizing elements in proteins. Biochemistry 31:2239-2253.
-
(1992)
Biochemistry
, vol.31
, pp. 2239-2253
-
-
Mrabet, N.T.1
Van Den Broeck, A.2
Van Den Brande, I.3
Stanssens, P.4
Laroche, Y.5
Lambeir, A.M.6
Matthijssens, G.7
Jenkins, J.8
Chiadmi, M.9
Van Tilbeurgh, H.10
-
28
-
-
0031415284
-
Subtilisin from psychrophilic Antarctic bacteria: Characterization and site-directed mutagenesis of residues possibly involved in the adaptation to cold
-
Narinx, E., E. Baise, and C. Gerday. 1997. Subtilisin from psychrophilic Antarctic bacteria: characterization and site-directed mutagenesis of residues possibly involved in the adaptation to cold. Protein Eng. 10:1271-1279.
-
(1997)
Protein Eng.
, vol.10
, pp. 1271-1279
-
-
Narinx, E.1
Baise, E.2
Gerday, C.3
-
29
-
-
0033574176
-
Characterization of psychrophilic alanine racemase from Bacillus psychrosaccharolyticus
-
Okubo, Y., K. Yokoigawa, N. Esaki, K. Soda, and H. Kawai. 1999. Characterization of psychrophilic alanine racemase from Bacillus psychrosaccharolyticus. Biochem. Biophys. Res. Commun. 256:333-340.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.256
, pp. 333-340
-
-
Okubo, Y.1
Yokoigawa, K.2
Esaki, N.3
Soda, K.4
Kawai, H.5
-
30
-
-
0001734325
-
Physiology and molecular biology of psychrophilic microorganisms
-
R. A. Herbert and R. J. Sharp (ed.), Chapman and Hall, Inc., New York, N.Y.
-
Russell, N. J. 1992. Physiology and molecular biology of psychrophilic microorganisms, p. 203-224. In R. A. Herbert and R. J. Sharp (ed.), Molecular biology and biotechnology of extremophiles. Chapman and Hall, Inc., New York, N.Y.
-
(1992)
Molecular Biology and Biotechnology of Extremophiles
, pp. 203-224
-
-
Russell, N.J.1
-
31
-
-
0032521220
-
Structural adaptations of the cold-active citrate synthase from an Antarctic bacterium
-
Russell, R. J., U. Gerike, M. J. Danson, D. W. Hough, and G. L. Taylor. 1998. Structural adaptations of the cold-active citrate synthase from an Antarctic bacterium. Structure 6:351-361.
-
(1998)
Structure
, vol.6
, pp. 351-361
-
-
Russell, R.J.1
Gerike, U.2
Danson, M.J.3
Hough, D.W.4
Taylor, G.L.5
-
32
-
-
0027136282
-
Comparative protein modeling by satisfaction of spatial restraints
-
Sali, A., and T. L. Blundell. 1993. Comparative protein modeling by satisfaction of spatial restraints. J. Mol. Biol. 234:779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
33
-
-
0027371155
-
Alanine dehydrogenase (ald) is required for normal sporulation in Bacillus subtilis
-
Siranosian, K. J., K. Ireton, and A. D. Grossman. 1993. Alanine dehydrogenase (ald) is required for normal sporulation in Bacillus subtilis. J. Bacteriol. 175:6789-6796.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6789-6796
-
-
Siranosian, K.J.1
Ireton, K.2
Grossman, A.D.3
-
34
-
-
0028790684
-
Structural basis for the extreme thermostability of D-glyceraldehyde-3-phosphate dehydrogenase from Thermotoga maritima: Analysis based on homology modeling
-
Szilagyi, A., and P. Zavodszky. 1995. Structural basis for the extreme thermostability of D-glyceraldehyde-3-phosphate dehydrogenase from Thermotoga maritima: analysis based on homology modeling. Protein Eng. 8:779-789.
-
(1995)
Protein Eng.
, vol.8
, pp. 779-789
-
-
Szilagyi, A.1
Zavodszky, P.2
-
35
-
-
0030860701
-
Sequence and homology model of 3-isopropylmalate dehydrogenase from the psychrotrophic bacterium Vibrio sp. 15 suggest reasons for thermal instability
-
Wallon, G., S. T. Lovett, C. Magyar, A. Svingor, A. Szilagyi, P. Zavodszky, D. Ringe, and G. A. Petsko. 1997. Sequence and homology model of 3-isopropylmalate dehydrogenase from the psychrotrophic bacterium Vibrio sp. 15 suggest reasons for thermal instability. Protein Eng. 10:665-672.
-
(1997)
Protein Eng.
, vol.10
, pp. 665-672
-
-
Wallon, G.1
Lovett, S.T.2
Magyar, C.3
Svingor, A.4
Szilagyi, A.5
Zavodszky, P.6
Ringe, D.7
Petsko, G.A.8
-
36
-
-
0026067797
-
16S ribosomal DNA amplification for phylogenetic study
-
Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
37
-
-
0344753156
-
-
26 July last date accessed
-
36a. Wu, C. Protein Information Resource. http://pir.georgetown.edu/gfserver /genefind.html. [26 July 1999, last date accessed.]
-
(1999)
Protein Information Resource
-
-
Wu, C.1
-
38
-
-
0028104182
-
Back-propagation and counter-propagation neural networks for phylogenetic classification of ribosomal RNA sequences
-
Wu, C., and S. Shivakumar. 1994. Back-propagation and counter-propagation neural networks for phylogenetic classification of ribosomal RNA sequences. Nucleic Acids Res. 22:4291-4299.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4291-4299
-
-
Wu, C.1
Shivakumar, S.2
-
39
-
-
0027342433
-
Thermolabile alanine racemase from a psychrotroph, Pseudomonas fluorescens; purification and properties
-
Yokoigawa, K., H. Kawai, K. Endo, Y. H. Lim, N. Esaki, and K. Soda. 1993. Thermolabile alanine racemase from a psychrotroph, Pseudomonas fluorescens; purification and properties. Biosci. Biotechnol. Biochem. 57:93-97.
-
(1993)
Biosci. Biotechnol. Biochem.
, vol.57
, pp. 93-97
-
-
Yokoigawa, K.1
Kawai, H.2
Endo, K.3
Lim, Y.H.4
Esaki, N.5
Soda, K.6
-
40
-
-
50849151000
-
Enzymic properties of alanine dehydrogenase of Bacillus subtilis
-
Yoshida, A., and E. Freese. 1965. Enzymic properties of alanine dehydrogenase of Bacillus subtilis. Biochim. Biophys. Acta 96:248-262.
-
(1965)
Biochim. Biophys. Acta
, vol.96
, pp. 248-262
-
-
Yoshida, A.1
Freese, E.2
|