Analysis of the structure and substrate binding of phormidium lapideum alanine dehydrogenase

Nature Structural Biology

Volumn 5, Issue 7 SUPPL., 1998, Pages 561-567

  Baker, Patrick J ^a   Sawa, Yoshihisa ^b   Shibata, Hitoshi ^b   Sedelnikova, Svetlana E ^a   Rice, David W ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

^b SHIMANE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

(S) 2 HYDROXY ACID OXIDASE; ALANINE DEHYDROGENASE; DINUCLEOTIDE; OXOACID;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CYANOBACTERIUM; ENZYME ACTIVE SITE; ENZYME BINDING; ENZYME STRUCTURE; ENZYME SUBSTRATE COMPLEX; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FOLDING; SEQUENCE HOMOLOGY;

ALANINE; ALANINE DEHYDROGENASE; AMINO ACID OXIDOREDUCTASES; AMINO ACID SEQUENCE; BINDING SITES; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; CYANOBACTERIA; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NAD; PROTEIN CONFORMATION; PYRUVIC ACID;

PHORMIDIUM LAPIDEUM;

EID: 0031846232     PISSN: 10728368     EISSN: None     Source Type: Journal    
DOI: 10.1038/817     Document Type: Article

References (43)

1. Yoshida, A. & Freese, E. Meth. Enz. 17, 176-181(1970).
2. McCowen, S.M. & Phibs Jr. V. J. Bacterial. 118, 590-597 (1974).
3. Ohshima, T. & Soda, K. Adv. Biochem. Engineer. Biotechnol. 42, 187-209 (1990).
4. Vancura, A.eta/. Eur.J. Biochem. 179, 221-227(1989).
5. Rowell, P. & Stewart, W.D.PArch. Microbiol. 107, 115-124 (1976).
6. Sawa, Y, Tani, M., Murata, K., Shibata, H. & Ochiar, H. J. Biochem. 116, 995-1000 (1994).
7. Andersen, A.B., Andersen, P. & LJungqvist, L Infection Immun. 60, 2317-2323 (1992).
8. Itoh, N. & Morikawa, R. Agric. Biol. Chem. 47, 2511-2519 (1983).
9. Vancurova. I. et al. Arch. Microbiol. 150, 438-440(1988).
10. Smith, M.T. & Emerich, D. W. Arch. Biochem. Biophys. 304, 379-385 (1993).
11. Porumb, H. et al. J. Biol. Chem. 262, 4610-4615 (1987).
12. Ohshima, T. & Soda, K. Eur. J. Biochem. 100.29-39 (1979).
13. Grimshaw.CE. & Cleland, W.W. Biochemistry 20, 5650-5655 (1981).
14. Grimshaw, CE, Cook, P.P. & Cleland, W.W. Biochemistry 20.5655-5661 (1981).
15. Kuroda, S., Tanizawa, K., Sakamoto, Y., Hidehiko, T. & Soda, K. Biochemistry, 29. 1009-1015(1990).
16. Siranosian, KJ., Ireton, K. & Grossmann, A.D. J. Bacterial. 175, 6789-6796 (1993).
17. Williams, R, Cotton, N.PJ, Thomas, CM. & Jackson, J.B. Microbiol. 140, 1595-1604 (1994).
18. Rossmann, M.G, Liljas, A., Branden, C-l. & Banaszak, LJ. In The enzymes, third edition, (ed. Boyer, P.D.) 61-102 (Academic Press, New York; 1975).
19. Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. J. Appl. Crystallogr. 26, 283-291 (1993).
20. Lee, B. & Richards, F.M J. Mol. Biol. 55, 379-400 (1971).
21. Eklund, H & Branden, C-l. In Coenzymes & cofactors - Pyridine nucleotide coenzymes (eds Dolphin, D., Avramovic, O. & Poulson, R.) 51-98 (J. Wiley, New York; 1987).
22. Birktoft, J.J & Banasak, U. J. Biol. Chem. 258.472-282, (1983).
23. Dünn, CR. etal. Phil. Trans. R. Soc. London, 332, 177-181 (1991).
24. Grindley, H.M, Artymiuk, PJ., Rice, D.W. & Willett, P. J. Mol. Biol. 229. 707-721 (1993).
25. Bernstein, F.C.et al J. Mol. Biol. 112, 535-542 (1977).
26. Goldberg. J.D., Yoshida, T.& Brick, P. J. Mol. Biol. 236, 1123-1140 (1994).
27. Lamzin, V.S., Dauter, Z, Popov, V.O., Harutyunyan, E.H.& Wilson, K.S. J. Mol. Biol. 236, 759-764(1994).
28. Schuller, DJ., Grant G.A.& Banaszak, U. A/ature Struct Biol. 2, 69-76 (1995).
29. Dengler, U.. Niefind, K., Kiess, M. & Schomburg. D. J. Mol. Biol. 267 640-660 (1997).
30. Matthews, B.W. & Rossmann, M.G. Meth. Enz. 115, 397-420 (1985).
31. Sali, A. & Blundell.T.L J. Mol. Biol. 212, 403-428 (1990).
32. Baker, PJ, Turnbull, A.P.. Sedelnikova, S.E, Stillman, TJ. & Rice, D.W. Structure 3, 693-705 (1995).
33. Wright, C.S., Alden, R.A. & Kraut, J. Nature 221, 235-242 (1969).
34. Sedelnikova, S.E, Rice, D.W., Shibata, H, Sawa, Y. & Baker, PJ. Acta Crystallogr. D 54, 407-408(1998).
35. Xuong, N.H, Nielsen, C, Hamlin, R. & Anderson, D. J. Appl. Crystallogr. 18, 324-350 (1985).
36. Collaborative Computing Project no.4. Acta Crystallogr. D50, 760-763 (1994).
37. Leslie, A.G.W. In Joint CCP4 & ESF-EACBM newsletter on protein crystallography, no.26. (SERC Laboratory, Daresbury, Warrington. WA4 4AD, UK; 1992).
38. Jones, T.A., Zou, J.Y.. Cowan, S.W. & Kjeldgaard, M. Acta Crystallogr. A 47, 110-119 (1991).
39. Tronrud, D.E., Ten Eyck, LF. & Matthews, B.W. Acta Crystallogr. A 43, 489-501 (1987).
40. Ferrin.T.E, Huang, CC, Jarvis, LE. & Langridge, R.J. Mol. Graphics 6, 13-27 (1988).
41. Huang, CC, Pettersen, E.F, Klein, T.E, Ferrin, T.E. & Langridge, R. J. Mol. Graphics 9, 230-236(1991).
42. Enouf, R.M. J. Mol. Graphics 15, 133-138 (1997).
43. Barton, GJ. Prot Engng. 6, 37-40 (1993).