Initiating ocular proteomics for cataloging bovine retinal proteins: Microanalytical techniques permit the identification of proteins derived from a novel photoreceptor preparation

Experimental Eye Research

Volumn 69, Issue 2, 1999, Pages 195-212

  Nishizawa, Yuji ^a   Komori, Naoka ^a   Usukura, Jiro ^b   Jackson, Kenneth W ^a   Tobin, Sara L ^b   Matsumoto, Hiroyuki ^a  

^a UNIVERSITY OF OKLAHOMA COLLEGE OF MEDICINE   (United States)

^b NAGOYA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

2 D gel; Aspartate aminotransferase; Bovine retina; cDNA cloning; Creatine kinase; HPLC ESIMS; IRBP; MALDI TOF; Mass spectrometry; Ocular proteomics; Peptide mass fingerprinting; Protein catalog; Recoverin

Indexed keywords

ASPARTATE AMINOTRANSFERASE; COMPLEMENTARY DNA; CREATINE KINASE; PROTEIN; RNA; TRYPSIN;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CATTLE; ENZYME ANALYSIS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR CLONING; NONHUMAN; PHOTORECEPTOR CELL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN MODIFICATION; RESEARCH; RETINA; SEQUENCE ANALYSIS; VISUAL SYSTEM;

EID: 0032813787     PISSN: 00144835     EISSN: None     Source Type: Journal    
DOI: 10.1006/exer.1999.0693     Document Type: Article

References (31)

1. Baylor D. How photons start vision. Proc. Natl. Acad. Sci. USA. 93:1994;560-565.
2. Bickar D., Reid P. D. A high-affinity protein stain for western blots, tissue prints, and electrophoretic gels. Anal. Biochem. 203:1992;109-115.
3. Chait B. T., Kent S. B. H. Weighing naked proteins: practical, high-accuracy mass measurement of peptides and proteins. Science. 257:1992;1885-1894.
4. Dizhoor A. M., Ray A., Kumar S., Niemi G., Spencer M., Brolley D., Walsh K. A., Philipov P. P., Hurley J. B., Stryer L. Recoverin: A calcium sensitive activator of retinal rod guanylate cyclase. Science. 251:1991;915-918.
5. Haas R. C., Korenfeld C., Zhang Z. F., Perryman B., Roman D., Strauss A. W. Isolation and characterization of the gene and cDNA encoding human mitochondrial creatine kinase. J. Biol. Chem. 264:1989;2890-2897.
6. Hemmer W., Riesinger I., Wallimann T., Eppenberger H. M., Quest A. F. G. Brain-type creatine kinase in photoreceptor cell outer segments: role of a phosphocreatine circuit in outer segment energy metabolism and phototransduction. J. Cell Sci. 106:1993;671-684.
7. Kinumi T., Jackson K. W., Ohashi M., Tobin S. L., Matsumoto H. The phosphorylation site and desmethionyl- N -terminus of Drosophila phosrestin I in vivo determined by mass spectrometric analysis of proteins separated on two-dimensional gel electrophoresis. Eur. Mass Spectrom. 3:1997;367-378.
8. Lam D. M.-K. Neurotransmitters in the vertebrate retina. Invest. Ophthalmol. Vis. Sci. 38:1997;553-556.
9. Lowry O. H., Rosebrough N. J., Farr A. L., Randal R. J. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:1951;265-275.
10. Matsumoto H., Kurien B., Takagi Y., Kahn E. S., Kinumi T., Komori N., Yamada T., Hayashi F., Isono K., Pak W. L., Jackson K. W., Tobin S. L. Phosrestin I undergoes the earliest light-induced phosphorylation by a calcium/calmodulin-dependent protein kinase in Drosophila photoreceptors. Neuron. 12:1994;997-1010.
11. Matsumoto H., Nishizawa Y., Komori N. Toward ocular proteomics: Cataloging photoreceptor proteins from bovine retina. Invest. Ophthalmol. Vis. Sci. 39:1998;S959.
12. Molday R. S. Photoreceptor membrane proteins, phototransduction, and retinal degenerative diseases. Invest. Ophthalmol. Vis. Sci. 39:1998;2493-2513.
13. Nishizawa Y., Jackson K. W., Usukura J., Tobin S. L., Matsumoto H. Catalogue initiation: Vertebrate retinal proteins. Invest. Ophthalmol. Vis. Sci. 37:1996;S637.
14. Nishizawa Y., Jackson K. W., Usukura J., Tobin S. L., Matsumoto H. Further efforts to catalogue retinal proteins. Invest. Ophthalmol. Vis. Sci. 38:1997;S592.
15. Owaribe K., Nishizawa Y., Franke W. W. Isolation and characterization of hemidesmosomes from bovine corneal epithelial cells. Exp. Cell Res. 192:1991;622-630.
16. Palmisano A., Aurilia V., Ferrara L., Cubellis M. V., Sannia G., Marino G. Nucleotide sequence of a cDNA coding for bovine mitochondrial aspartate aminotransferase. Int. J. Biochem. Cell. Biol. 27:1995;507-511.
17. Papermaster D. S. Preparation of retinal rod outer segments. Methods Enzymol. 81:1982;48-52.
18. Pappin D. J. C., Hojrup P., Bleasby A. J. Rapid identification of proteins by peptide-mass fingerprinting. Curr. Biol. 3:1993;327-332.
19. Payne R. M., Haas R. C., Strauss A. W. Structural characterization and tissue-specific expression of the mRNAs encoding isoenzymes from two rat mitochondrial creatine kinase genes. Biochim. Biophys. Acta. 1089:1991;352-361.
20. Pepperberg D. R., Okajima T. L., Wiggert B., Ripps H., Crouch R. K., Chader G. J. Interphotoreceptor retinoid-binding protein (IRBP). Molecular biology and physiological role in the visual cycle of rhodopsin. Mol. Neurobiol. 7:1993;61-85.
21. Rosenfeld J., Capdevielle J., Guillemot J. C., Ferrara P. In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal. Biochem. 203:1992;173-179.
22. Ross C. D., Bowers M., Godfrey D. A. Distribution of the activities of aspartate aminotransferase isoenzymes in rat retinal layers. Neurosci. Lett. 74:1987;205-210.
23. Siuzdak G. The emergence of mass spectrometry in biochemical research. Proc. Natl. Acad. Sci. USA. 91:1994;11290-11297.
24. Steeghs K., Peters W., Bruckwilder M., Croes H., Van Alewijk D., Wieringa B. Mouse ubiquitous mitochondrial creatine kinase: gene organization and consequences from inactivation in mouse embryonic stem cells. DNA Cell Biol. 14:1995;539-553.
25. Uy R., Wold F. Posttranslational covalent modification of proteins. Science. 198:1977;890-896.
26. Waterston R., Sulston J. E. The human genome project: Reaching the finish line. Science. 282:1998;53-54.
27. Wilkins M. R., Williams K. L., Appel R. D., Hochstrasser D. F. Proteome research: New frontiers in functional genomics. 1997;Springer-Verlag, Berlin, Heidelberg, New York.
28. Wold F. In vivo chemical modification of proteins (post-translational modification). Annu. Rev. Biochem. 50:1981;783-814.
29. Yarfitz S., Hurley J. B. Transduction mechanisms of vertebrate and invertebrate photoreceptors. J. Biol. Chem. 269:1994;14329-14332.
30. Yau K-W. Phototransduction mechanism in retinal rods and cones. Invest. Ophthalmol. Vis. Sci. 35:1994;9-32.
31. Zimmerman W. F., Godchaux III W. Preparation and characterization of sealed bovine rod cell outer segments. Meth. Enzymol. 81:1982;52-57.