Identification and functional analysis of a putative non-hr origin of DNA replication from the Spodoptera littoralis type B multinucleocapsid nucleopolyhedrovirus

Journal of General Virology

Volumn 80, Issue 8, 1999, Pages 2263-2274

  Huang, Jianhe ^a   Levin, David B ^a  

^a UNIVERSITY OF VICTORIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; LUCIFERASE; PALINDROMIC DNA; TRANSCRIPTION FACTOR; VIRUS DNA;

ARTICLE; AUTOGRAPHA CALIFORNICA; DNA REPLICATION ORIGIN; DNA SEQUENCE; GENE EXPRESSION; INSECT VIRUS; LEPIDOPTERA; NUCLEOTIDE SEQUENCE; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; REPORTER GENE; VIRUS GENOME;

ARBOVIRUS; AUTOGRAPHA CALIFORNICA; CYPOVIRUS; DNA VIRUSES; INSECTA; INVERTEBRATA; LEPIDOPTERA; NUCLEOPOLYHEDROVIRUS; ORGYIA; ORGYIA PSEUDOTSUGATA; SPODOPTERA EXIGUA; SPODOPTERA LITTORALIS; UNIDENTIFIED BACULOVIRUS;

EID: 0032803876     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-80-8-2263     Document Type: Article

References (56)

1. Ahrens, C. H., Pearson, M. N. & Rohrmann, G. F. (1995). Identification and characterization of a second putative origin of DNA replication in a baculovirus of Orgyia pseudotsugata. Virology 207, 572-576.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
3. Ayres, M. D., Howard, S. C., Kuzio, J., Lopez-Ferber, M. & Possee, R. D. (1994). The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202, 586-605.
4. Blissard, G. W. & Rohrmann, G. F. (1990). Baculovirus diversity and molecular biology. Annual Review of Entomology 35, 127-155.
5. Boulikas, T. (1996). Common structural features of replication origins in all life forms. Journal of Cellular Biochemistry 60, 297-316.
6. Bradford, M. M. (1976). Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry 72, 248-254.
7. Broer, R., Heldens, J. G. M., van Strien, E. A., Zuidema, D. & Vlak, J. M. (1998). Specificity of multiple homologous genomic regions in Spodoptera exigua nucleopolyhedrovirus DNA replication. Journal of General Virology 79, 1563-1572.
8. Carson, D. D., Summers, M. D. & Guarino, L. A. (1991). Molecular analysis of a baculovirus regulatory gene. Virology 182, 279-286.
9. Cheng, L. & Kelly, T. J. (1989). Transcriptional activator nuclear factor I stimulates the replication of SV40 minichromosomes in vivo and in vitro. Cell 59, 541-551.
10. Croizier, L. & Croizier, G. (1994). Nucleotide sequence of the polyhedrin gene of Spodoptera littoralis multiple nucleocapsid nuclear polyhedrosis virus. Biochimica et Biophysica Acta 1218, 457-459.
11. Croizier, G., Boukhoudmi-Amiri, K. & Croizier, L. (1989). A physical map of Spodoptera littoralis B-type nuclear polyhedrosis virus genome. Archives of Virology 104, 145-151.
12. DePamphilis, M. L. (1988). Transcriptional elements as components of eukaryotic origin of DNA replication. Cell 52, 635-638.
13. DePamphilis, M. L. (1993). Eukaryotic DNA replication: anatomy of an origin. Annual Review of Biochemistry 62, 29-63.
14. DePamphilis, M. L. (1996). Eukaryotic replication origins. In DNA Replication in Eukaryotic Cells, pp. 45-86. Edited by M. L. DePamphilis. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
15. Faktor, O. & Kamensky, B. (1997). Genomic location and nucleotide sequence of a lef-8 gene of the Spodoptera littoralis nucleopolyhedrovirus. Virus Genes 15, 9-15.
16. Faktor, O., Toister-Achituv, M. & Kamensky, B. (1995). Identification and nucleotide sequence of an ecdysteroid UDP-glucosyltransferase gene of Spodoptera littoralis multicapsid nuclear polyhedrosis virus. Virus Genes 11, 47-52.
17. Faktor, O., Toister-Achituv, M. & Nahum, O. (1997 a). Enhancer element, repetitive sequences, and gene organization in an 8-kbp region containing the polyhedrin gene of the Spodoptera littoralis nucleopolyhedrovirus. Archives of Virology 142, 1-15.
18. Faktor, O., Toister-Achituv, M., Nahum, O. & Kamensky, B. (1997 b). The p10 gene of Spodoptera littoralis nucleopolyhedrovirus: nucleotide sequence, transcription analysis and unique gene organization in the p10 locus. Journal of General Virology 78, 2119-2128.
19. Guarino, L. A. & Summers, M. D. (1986). Interspersed homologous DNA of Autographa californica nuclear polyhedrosis virus enhances delayed-early gene expression. Journal of Virology 60, 215-223.
20. Heldens, J. G. M., Broer, R., Zuidema, D., Goldbach, R. W. & Vlak, J. M. (1997). Identification and functional analysis of a non-hr origin of DNA replication in the genome of Spodoptera exigua multicapsid nucleopolyhedrovirus. Journal of General Virology 78, 1497-1506.
21. Herendeen, D. R., Kassavetis, G. A., Barry, J., Alberts, B. M. & Geiduschek, E. P. (1989). Enhancement of bacteriophage T4 late transcription by components of the T4 DNA replication apparatus. Science 245, 952-958.
22. Hu, Z., Broer, R., Westerlaken, J., Martens, J. W. M., Jin, F., Wang, L. M. & Vlak, J. M. (1997). Identification and nucleotide sequence of the ecdysteroid UDP-glycosyltransferase gene of the Buzura suppressaria nucleopolyhedrovirus. Virus Research 47, 91-97.
23. Jones, K. A., Kadonaga, J. T., Rosenfeld, P. J., Kelly, T. J. & Tjian, R. (1987). A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication. Cell 73, 1207-1221.
24. Kogan, P. H. & Blissard, G. W. (1994). A baculovirus gp64 early promoter is activated by host transcription factor binding to CACGTG and GATA elements. Virology 119, 119-212.
25. Kool, M., Goldbach, R. W. & Vlak, J. M. (1994). A putative non-hr origin of DNA replication in the HindIII-K fragment of Autographa californica multiple nucleocapsid nuclear polyhedrosis virus. Journal of General Virology 75, 3345-3352.
26. Kool, M., Ahrens, C. H., Vlak, J. M. & Rohrmann, G. F. (1995). Replication of baculovirus DNA. Journal of General Virology 76, 2103-2118.
27. Lee, H. J. & Krell, P. J. (1994). Reiterated DNA fragments in defective genomes of Autographa californica nuclear polyhedrosis virus are competent for AcMNPV-dependent DNA replication. Virology 202, 418-429.
28. Leisy, D. J. & Rohrmann, G. F. (1993). Characterization of the replication of plasmids containing hr sequences in baculovirus-infected Spodoptera frugiperda cells. Virology 196, 722-730.
29. Leisy, D. J., Rasmussen, C., Kim, H. T. & Rohrmann, G. F. (1995). The Autographa californica nuclear polyhedrosis virus homologous region 1a: identical sequences are essential for DNA replication activity and transcriptional enhancer function. Virology 208, 742-752.
30. Levin, D. B., Lattinen, A. M., Clarke, T. C., Lucarotti, C. J., Morin, B. & Otvos, I. S. (1997). Characterization of nuclear polyhedrosis viruses from three subspecies of Lambdina fiscellaria. Journal of Invertebrate Pathology 69, 125-134.
31. Li, Y., Passarelli, A. L. & Miller, L. K. (1993). Identification, sequence, and transcriptional mapping of lef-3, a baculovirus gene involved in late and very late gene expression. Journal of Virology 67, 5260-5268.
32. Lu, A. & Carstens, E. B. (1993). Immediate-early baculovirus genes transactivate the p143 gene promoter of Autographa californica nuclear polyhedrosis virus. Virology 195, 710-718.
33. Lu, A., Krell, P. J., Vlak, J. M. & Rohrmann, G. F. (1997). Baculovirus DNA replication. In The Baculoviruses, pp. 171-191. Edited by L. K. Miller. New York: Plenum.
34. Majima, K., Kobara, R. & Maeda, S. (1993). Divergence and evolution of homologous regions of Bombyx mori nuclear polyhedrosis virus. Journal of Virology 67, 7513-7521.
35. Mul, Y. M., Verrijzer, C. P. & van der Vliet, P. C. (1990). Transcription factors NFI and NFIII/OCT-1 function independently, employing different mechanisms to enhance adenovirus DNA replication. Journal of Virology 64, 5510-5518.
36. Nguyen-Huynh, A. T. & Schaffer, P. A. (1998). Cellular transcription factor enhance herpes simplex virus type 1 oriS-dependent DNA replication. Journal of Virology 72, 3635-3645.
37. Nissen, M. S. &Friesen, P. D. (1989). Molecular analysis of the transcriptional regulatory region of an early baculovirus gene. Journal of Virology 63, 493-503.
38. O'Reilly, D. R., Miller, L. K. & Luckow, V. A. (1992). Baculovirus Expression Vectors. A Laboratory Manual. New York: W. H. Freeman.
39. Parker, C. S. & Topol, J. (1984). A Drosophila RNA polymerase II transcription factor contains a promoter-region-specific DNA-binding activity. Cell 36, 357-369.
40. Pearson, M. N. & Rohrmann, G. F. (1995). Lymantria dispar nuclear polyhedrosis virus homologous regions: characterization of their ability to function as replication origins. Journal of Virology 69, 213-221.
41. Pearson, M. N., Bjornson, R. M., Ahrens, C. & Rohrmann, G. F. (1993). Identification and characterization of a putative origin of DNA replication in the genome of a baculovirus pathogenic for Orgyia pseudotsugata. Virology 197, 715-725.
42. Pruijn, G. J. M., van Miltenburg, R. T., Claessens, J. A. J. & van der Vliet, P. C. (1988). Interaction between the octamer-binding protein nuclear factor III and the adenovirus origin of DNA replication. Journal of Virology 62, 3092-3102.
43. Quandt, K., Frech, K., Karas, H., Wingender, E. & Werner, T. (1995). MatInd and MatInspector - new fast and versatile tools for detection of consensus matches in nucleotide sequences. Nucleic Acids Research 23, 4878-4884.
44. Rivier, D. H. & Rine, J. (1992). An origin of DNA replication and a transcription silencer require a common element. Science 256, 659-663.
45. Rodems, S. M. & Friesen, P. D. (1993). The hr5 transcriptional enhancer stimulates early expression from the Autographa californica nuclear polyhedrosis virus genome but is not required for virus replication. Journal of Virology 67, 5776-5785.
46. Sam brook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
47. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5468.
48. Sarisky, R. T. & Hayward, G. S. (1996). Evidence that the UL84 gene product of human cytomegalovirus is essential for promoting oriLyt-dependent DNA replication and formation of replication compartments in cotransfection assays. Journal of Virology 70, 7398-7413.
49. Smith, I. & Goodale, C. (1998). Sequence and in vivo transcription of Lacanobia oleracea granulovirus egt. Journal of General Virology 79, 405-413.
50. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
51. van der Vliet, P. C. (1996). Roles of transcription factors in DNA replication. In DNA Replication in Eukaryotic Cells, p. 87-118. Edited by M. L. DePamphilis. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
52. Volkman, L. E., Blissard, G. W., Freisen, P. D., Possee, R. D. & Theilmann, D. A. (1995). The Baculoviridae. In Virus Taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses, pp. 104-113. Edited by F. A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo & M. D. Summers. Vienna & New York: Springer-Verlag.
53. Wolff, J.-L. C., Herzog, L. M., Sun, L. & Levin, D. B. (1998). Identification and Characterization of the Spodoptera littoralis nucleopolyhedrovirus lef-3 gene. Archives of Virology 143, 743-767.
54. Wu, Y. & Carstens, E. B. (1996). Initiation of baculovirus DNA replication: early promoter regions can function as infection-dependent replicating sequences in a plasmid-based replication assay. Journal of Virology 70, 6967-6972.
55. Xie, W. D., Arif, B., Dobos, P. & Krell, P. J. (1995). Identification and analysis of a putative origin of DNA replication in the Choristoneura fumiferana multinucleocapsid nuclear polyhedrosis virus genome. Virology 209, 409-419.
56. Zannotto, P. M., Kessing, B. D. & Maruniak, J. E. (1993). Phylogenetic interrelationships among baculoviruses: evolutionary rates and host associations. Journal of Invertebrate Pathology 62, 147-164.