RAPD-based inter- and intravarietal classification of fungi of the Gaeumannomyces-Phialophora complex

Journal of Phytopathology

Volumn 147, Issue 2, 1999, Pages 109-117

  Augustin, C ^a   Ulrich, K ^a   Ward, E ^a,b   Werner, A ^a  

^a LEIBNIZ CENTRE FOR AGRICULTURAL LANDSCAPE RESEARCH ZALF   (Germany)

^b ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

Gaeumannomyces Phialophora complex; Inter and intravarietal differentiation; RAPD PCR; Take all

Indexed keywords

FUNGUS DETECTION; PLANT PATHOGEN INTERACTION; RANDOM AMPLIFIED POLYMORPHIC DNA;

GAEUMANNOMYCES; GAEUMANNOMYCES CYLINDROSPORUS; GAEUMANNOMYCES GRAMINIS; PHIALOPHORA;

EID: 0032790450     PISSN: 09311785     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0434.1999.147002109.x     Document Type: Article

References (38)

1. Asher, M. J. C. (1980): Variation in pathogenicity and cultural characters in Gaeumannomyces graminis var. tritici. Trans. Br. Mycol. Soc. 75, 213-220.
2. Asher, M. J. C. (1981): Pathogenic variation. In: Asher, M. J. C., P. J. Shipton (eds), Biology and control. of take-all, pp. 199-218. Academic Press, London.
3. Augustin, C. (1989): Moeglichkeiten einer Schadminderung der Schwarzbeinigkeit an Weizen mittels apathogener Pilze. I. Mitt. Selektion und Testung apathogener Pilze im Pflanzentest unter semi- und unsterilen Bedingungen. Zentralblatt fuer Mikrobiologie 144, 563-570.
4. Augustin, C., H.-J. Jacob, A. Werner (1997); Effects on growth of wheat plants of isolates of Gaeumannomyces/Phialophora-complex fungi in different conditions of soil moisture, temperature, and photoperiod. Europ. J. Plant Pathol. 103, 417-426.
5. Bateman, G. L., E. Ward, J. F. Antoniw (1992): Identification of Gaeumannomyces graminis var. tritici and Gaeumannomyces graminis var. arenae using a DNA probe and non-molecular method. Mycol. Res. 96, 737-742.
6. Bateman, G. L., E. Ward, D., Hornby, R. J. Gutteridge (1997): Comparisons of isolates of the take-all fungus, Gaeumannomyces graminis var. tritici from different cereal sequences using DNA probes and non-molecular methods. Soil Biol. Biochem. 29, 1225-1232.
7. Bryan, G. T., M. Daniels, A. E. Osbourn (1995): Comparison of fungi within the Gaeumannomyces-Phialophora complex by analysis of ribosomal DNA sequences. Appl. Environ. Microbiol. 61, 681-689.
8. Crowhurst, R. N., B. T. Hawthorne, E. H. A. Rikkerink, M. D. Templeton (1991): Differentiation of Fusarium solani f. sp. cucurbitae races 1 and 2 by random amplification of polymorphic DNA. Curr. Genet 20, 391-396.
9. Datnoff, L. E., M. L. Elliott, D. B. Jones (1993). Black sheath root caused by Gaeumannomyces graminis var. graminis in Florida. Plant Dis. 77, 210.
10. Elliott, M. L. (1991): Determination of an etiological agent of bermuda grass decline. Phytopathology 81, 1380-1384.
11. Fouly, H. M., H. T. Wilkinson, L. L. Domier (1996): Use of random amplified polymorphic DNA (RAPD) for identification of Gaeumannomyces species. Soil Biol. Biochem. 28, 703-710.
12. Gardes, M., T. J. White, J. A., Fortin, T. D., Bruns, J. W. Taylor (1991): Identification of indigenous and induced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA. Can J. Bot. 69, 180-189.
13. Henson, J. M. (1989): DNA probe for identification of the take-all fungus Gaeumannomyces graminis. Appl. Environ. Microbiol. 55, 284-288.
14. Henson, J. M. (1992): DNA hybridization and polymerase chain reaction (PCR) tests for the identification of Gaeumannomyces, Phialophora and Magnaporthe isolates. Mycol. Res 96, 629-639.
15. Henson, J. M., T. Goins, W., Grey, D. E., Mathre, M. L. Elliott (1993): Use of polymerase chain reaction to detect Gaeumannomyces graminis DNA in plants grown in artificially and naturally infested soil. Mol. Plant. Pathol. 83, 283-287.
16. Hollins, T. W., P. R. Scott (1990): Pathogenicity of Gaeumannomyces graminis isolates to wheat and rye seedlings. Plant Pathol. 39, 269-273.
17. Hornby, D., G. L. Bateman, R. W., Payne, M. E., Brown, D. R., Henden, R. Campell (1993): Field tests of bacteria and soil-applied fungicides as control. agents for take-all in winter wheat. Ann. Appl. Biol. 122, 253-270.
18. Hornby, D., G. L. Bateman (1991): Take-all disease of cereals. Home Grown Cereals Authority Research Review 2.
19. Jones, M. J., L. D. Dunkle (1993): Analysis of Cochliobolus carbonum races by PCR amplification with arbitrary and gene-specific primers. Phytopathology 83, 366-370.
20. Juhnke, M. D., D. E. Mathre, D. C. Sands (1984): A selective medium for Gaeumannomyces graminis var. tritici. Plant Dis. 68, 233-236.
21. Lee, S. B., J. W. Taylor (1990): Isolation of DNA from fungal mycelia and single spores. In: Innis, M. A., D. H. Gelfand, J. J. Sninsky, T. J. White (eds). PCR Protocols. A Guide to Methods and Applications. pp. 282-287, Academic Press, San Diego.
22. Lieckfeldt, E., W. Meyer, K., Kuhls, T. Boerner (1992): Characterization of filamentous fungi and yeasts by DNA fingerprinting and random amplified polymorphic DNA. Belgian J. Bot. 125, 226-233.
23. Naiki, T., R. J. Cook (1983): Factors in loss of pathogenicity in Gaeumannomyces graminis var. tritici. Phytopathology 73, 1652-1656.
24. Nilsson, H. E. (1972): The occurrence of lobed hyphopodia on an isolate of the take-all fungus. 'Ophiobolus graminis Sacc.', on wheat in Sweden. Swedish J. Agric. Res. 2, 105-118.
25. O'Dell, M., R. B. Flavell, T. W. Hollins (1992): The classification of isolates of Gaeumannomyces graminis from wheat, rye and oats using restriction fragment lenghts polymorphisms in families of repeated DNA sequences. Plant Pathol. 41, 554-562.
26. Schaeffer, C., J. Woestemeyer (1992): Random primer dependent PCR differentiates aggressive from non-aggressive isolates of the oilseed rape pathogen Phoma lingam (Leptosphaeria maculans). J. Phytopathol. 136, 124-136.
27. Schesser, K., A. Luder, J. M. Henson (1991): Used of polymerase chain reaction to detect the take-all fungus, Gaeumannomyces graminis, in infected wheat plants. Appl. Environ. Microbiol. 57, 553-556.
28. Tan, M. K., P. T. W. Wong, M. P. Holley (1994): Characterization of nuclear ribosomal DNA (rDNA) in Gaeumannomyces graminis and correlation of rDNA variation with G. graminis varieties. Mycol. Res. 98, 553-561.
29. Tivoli, B., J. M. Lemaire, B. Jouan (1974): Protection of wheat against Ophiobolus graminis (Sacc.) with low aggressivity strains of the same parasite. Annu. Rev. Phytopathol. 6, 395-406.
30. Walker, J. (1980): Gaeumannomyces, Linocarpon, Ophiobolus and several other genera of scolecospored ascomycetes and Phialophora conidial states, with a note on hyphopodia. Mycotaxonomy 11, 1-29.
31. Walker, J. (1981): Taxonomy of take-all fungi and related genera and species. In: Asher, M. J. C., P. J. Shipton (eds), Biology and control of take-all, pp. 15-74, Academic Press, London.
32. Ward, E. (1995): Improved polymerase chain reaction (PCR) detection of Gaeumannomyces graminis including a safeguard against false negatives. Europ. J. Plant Patholol. 101, 561-566.
33. Ward, E., A. Y. Akrofi (1994): Identification of fungi in the Gaeumannomyces-Phialophora complex by RFLPs of PCR-amplified ribosomal DNAs. Mycol. Res. 98, 219-224.
34. Ward, E., G. L. Bateman (1994): Identification of fungi in the Gaeumannomyces-Phialophora complex associated with take-all of cereals and grasses using DNA probes. In: Schots, A., F. M. Dewey, R. P. Oliver (eds), Modern assays for plant pathogenic fungi. Identification detection and quantification, pp. 127-134, CABI, Wallingford, UK.
35. Ward, E., R. Gray (1992): Generation of a ribosomal probe by PCR and its use in identification of fungi within the Gaeumannomyces-Phialophora complex. Plant Pathol. 41, 730-736.
36. Wetzel, H. C. III, P. H. Dernoeden, P. D. Millner (1996): Identification of darkly pigmentod fungi associated with turfgrass roots by mycelial characteristics and RAPD-PCR. Plant Dis. 80, 359-364.
37. Woestemeyer, J., C. Schaefer, M., Kellner, M. Weisfeld (1991): DNA polymorphisms detected by random primer dependent PCR as a powerful tool for molecular diagnostics of plant pathogenic fungi. Adv. Mol. Genet. 5, 227-240.
38. Xue, B., P. H. Goodwin, S. L. Annis (1992): Pathotype identification of Leptosphaeria maculans with PCR and oligonucleotide primers from ribosomal internal transcribed spacer sequences. Physiol. Mol. Plant Pathol. 41, 179-188.