Applicability of ITS data in Roccellaceae (Arthoniales, Euascomycetes) phylogeny

Lichenologist

Volumn 31, Issue 5, 1999, Pages 461-476

  Myllys, L ^a   Lohtander, K ^a   Kallersjo M ^b   Tehler, A ^b  

^a STOCKHOLM UNIVERSITY   (Sweden)

^b SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ARTHONIALES; ARTHOTHELIUM SPECTABILE; ROCCELLACEAE;

EID: 0032755858     PISSN: 00242829     EISSN: None     Source Type: Journal    
DOI: 10.1006/lich.1999.0221     Document Type: Article

References (41)

1. Berbee M., Yoshimura A., Sugiyama J., Taylor J. W. Is Penicillium monophyletic? An evaluation of phylogeny in the family Trichocomaceae from 18S, 5·8S and ITS ribosomal DNA sequence data. Mycologia. 87:1995;210-222.
2. Buckler E. S., Holtsford T. P. Zea systematics: ribosomal ITS evidence. Molecular Biology and Evolution. 13:1996;612-622.
3. Dixon M. T., Hillis D. M. Ribosomal RNA structure: compensatory mutations and implications for phylogenetic analysis. Molecular Biology and Evolution. 10:1993;256-267.
4. Eriksson O. E., Winka K. Families and higher taxa of Ascomycota. Myconet. 1:1998;17-24.
5. Farris J. S., KällersjÖ M., Kluge A. G., Bult C. Testing significance of incongruence. Cladistics. 10:1995;315-319.
6. Farris J. S., Albert V. A., KällersjÖ M., Lipscomb D., Kluge A. G. Parsimony jackknifing outperforms Neighbor-Joining. Cladistics. 12:1996;99-124.
7. Farris J. S., KällersjÖ M., Crowe T., Lipscomb D., Johansson U. Frigatebirds, tropicbirds and Ciconiida: Excesses and of confidence probability. Cladistics. 1999.
8. Friedlander T. P., Regier J. C., Mitter C. Phylogenetic information content of five nuclear gene sequences in animals: initial assessment of character sets from concordance and divergence studies. Systematic Biology. 43:1994;511-525.
9. Gardes M., Bruns T. D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology. 2:1993;113-118.
10. Gargas A., DePriest P. T. A nomenclature for fungal PCR primers with examples from intron-containing SSU rDNA. Mycologia. 88:1996;745-748.
11. Gargas A., Taylor J. W. Polymerase chain reaction (PCR) primers for amplifying and sequencing 18S rDNA from lichenized fungi. Mycologia. 84:1992;589-592.
12. Gargas A., DePriest P. T., Taylor J. W. Positions of multiple insertions in SSU rDNA of lichen-forming fungi. Molecular Biology and Evolution. 12:1995;208-218.
13. Grube M., DePriest P. T., Gargas A., Hafellner J. DNA isolation from lichen ascomata. Mycological Research. 99:1995;1321-1324.
14. Grube M. Classification and phylogeny in the Arthoniales (lichenized Ascomycetes). Bryologist. 101:1998;377-391.
15. Hawksworth D. L., Kirk P. M., Sutton B. C., Pegler D. N. Ainsworth & Bisby's Dictionary of the Fungi. 1995;CAB International, Wallingford.
16. Huelsenbeck J. P. Is the Felsenstein zone a fly trap? Systematic Biology. 46:1997;69-74.
17. Kluge A. G. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Systematic Zoology. 38:1989;7-25.
18. Kuhls K., Lieckfeldt E., Samuels G. J., Meyer W., Kubicek C. P., BÖrner T. Revision of Trichoderma sect. Longibrachiatum including related teleomorphs based on analysis of ribosomal DNA internal transcribed spacer sequences. Mycologia. 89:1997;442-460.
19. Lee S. B., Milgroom M. G., Taylor J. W. A rapid, high yield mini-prep method for isolation of total genomic DNA from fungi. Fungal Genetics Newsletter. 35:1988;23-24.
20. Lohtander K., Myllys L., Sundin R., KällersjÖ M., Tehler A. The species pair concept in the lichen Dendrographa leucophaea (Arthoniales): analyses based on ITS sequences. Bryologist. 101:1998a;404-411.
21. Lohtander K., KällersjÖ M., Tehler A. Dispersal strategies in Roccellina capensis (Arthoniales). Lichenologist. 30:1998b;341-350.
22. Lutzoni F. M. Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology. 46:1997;373-406.
23. Mindell D. P., Honeycutt R. L. Ribosomal RNA in vertebrates: evolution and phylogenetic applications. Annual Review of Ecology and Systematics. 21:1990;541-566.
24. Mindell D. P., Thacker C. E. Rates of molecular evolution: phylogenetic issues and applications. Annual Review of Ecology and Systematics. 27:1996;279-303.
25. Miyamoto, M. M. Cracraft, J. 1991, Phylogenetic inference, DNA sequence analysis, and the future of molecular systematics, Phylogenetic analysis of DNA sequences, (M. M. Miyamoto, J. Cracraft, 3, 17, New York, Oxford University Press.
26. Myllys, L. 1999, Phylogenetic Studies in Arthoniales (Euascomycetes) - Evidence from Molecular and Morphological Data. PhD thesis. Stockholm University.
27. Myllys L., KällersjÖ M., Tehler A. A comparison of SSU rDNA data and morphological data in Arthoniales (Euascomycetes) phylogeny. Bryologist. 101:1998;70-85.
28. Myllys, L. Lohtander, K. KällersjÖ, M. Tehler, A. 1999, Sequence insertions and ITS data provide congruent information in Roccella canariensis and R. tuberculata (Arthoniales, Euascomycetes) phylogeny. Molecular Phylogenetics and Evolution, 12, 295, 309.
29. Nixon K. C., Carpenter J. M. On simultaneous analysis. Cladistics. 12:1996;221-241.
30. Tehler A. The genera Dirina and Roccellina (Roccellaceae). Opera Botanica. 70:1983;1-86.
31. Tehler A. A new approach to the phylogeny of Euascomycetes with a cladistic outline of Arthoniales focussing on Roccellaceae. Canadian Journal of Botany. 68:1990;2458-2492.
32. Tehler A. Schismatomma and three new or reinstated genera, a reassessment of generic relationships in Arthoniales. Cryptogamic Botany. 3:1993;139-151.
33. Tehler A. Arthoniales phylogeny as indicated by morphological and rDNA sequence data. Cryptogamic Botany. 5:1995;82-97.
34. Tehler A. Systematics, Phylogeny and Classification. Nash III T. H. Lichen Biology. 1996;217-239 Cambridge University Press, Cambridge.
35. Tehler A. Syncesia (Arthoniales, Euascomycetidae). Flora Neotropica. 74:1997;1-49.
36. Tehler A., Lohtander K., Myllys L., Sundin R. On the identity of the genera Hubbsia and Reinkella (Roccellaceae). Acta Universitatis Upsaliensis Symbolae Botanicae Upsalienses. 32:1997;255-265.
37. Thell A. Phylogenetic relationships of some cetrarioid species in British Columbia with notes on Tuckermannopsis. Folia Cryptogamica Estonica. 32:1998;113-122.
38. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting positions-specific gap penalties and weight matrix choice. Nucleic Acids Research. 22:1994;4673-4680.
39. Wenzel J. W., Siddall M. E. Noise. Cladistics. 1999.
40. Wheeler W. C. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Systematic Biology. 44:1995;321-331.
41. White T. J., Bruns T., Lee S. B., Taylor J. W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. PCR Protocols a Guide to Methods and Applications. 1990;315-322 Academic Press, San Diego.