메뉴 건너뛰기




Volumn 12, Issue 11, 1999, Pages 1077-1082

Nuclease P1 digestion combined with tandem mass spectrometry for the structure determination of DNA photoproducts

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE DERIVATIVE; CYCLOBUTANE DERIVATIVE; DNA; NUCLEASE; OLIGODEOXYNUCLEOTIDE DERIVATIVE; PYRIMIDINE DERIVATIVE; THYMINE DERIVATIVE;

EID: 0032753640     PISSN: 0893228X     EISSN: None     Source Type: Journal    
DOI: 10.1021/tx9900831     Document Type: Article
Times cited : (50)

References (36)
  • 1
    • 0023944949 scopus 로고
    • Site-specifically modified oligodeoxynucleotides as probes for the structural and biological effects of DNA-damaging agents
    • Basu, A. K., and Essigmann, J. M. (1988) Site-specifically modified oligodeoxynucleotides as probes for the structural and biological effects of DNA-damaging agents. Chem. Res. Toxicol. 1, 1-18.
    • (1988) Chem. Res. Toxicol. , vol.1 , pp. 1-18
    • Basu, A.K.1    Essigmann, J.M.2
  • 2
    • 0030838767 scopus 로고    scopus 로고
    • The molecular basis of nonmelanoma skin cancer: New understanding
    • Grossman, D., and Leffell, D. J. (1997) The molecular basis of nonmelanoma skin cancer: new understanding. Arch. Dermatol. 133, 1263-1270.
    • (1997) Arch. Dermatol. , vol.133 , pp. 1263-1270
    • Grossman, D.1    Leffell, D.J.2
  • 3
    • 0345196540 scopus 로고    scopus 로고
    • Photochemical genotoxicity and photochemical carcinogenesis - Two sides of a coin?
    • Muller, L., Kasper, P., Kersten, B., and Zhang, J. (1998) Photochemical genotoxicity and photochemical carcinogenesis - two sides of a coin? Toxicol. Lett. 102-103, 383-387.
    • (1998) Toxicol. Lett. , vol.102-103 , pp. 383-387
    • Muller, L.1    Kasper, P.2    Kersten, B.3    Zhang, J.4
  • 4
    • 0031080462 scopus 로고    scopus 로고
    • Formation and processing of UV photoproducts: Effects of DNA sequence and chromatin environment
    • Pfeifer, G. P. (1997) Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment. Photochem. Photobiol. 65, 270-283.
    • (1997) Photochem. Photobiol. , vol.65 , pp. 270-283
    • Pfeifer, G.P.1
  • 6
    • 0020526968 scopus 로고
    • Formation of an adenine-thymine photoadduct in the deoxydinucleoside monophosphate d(TpA) and in DNA
    • Bose, S. N., Davies, R. J. H., Sethi, S. K., and McCloskey, J. A. (1983) Formation of an Adenine-thymine Photoadduct in the Deoxydinucleoside Monophosphate d(TpA) and in DNA. Science 220, 723-725.
    • (1983) Science , vol.220 , pp. 723-725
    • Bose, S.N.1    Davies, R.J.H.2    Sethi, S.K.3    McCloskey, J.A.4
  • 7
    • 0029983588 scopus 로고    scopus 로고
    • The structure of d(TpA)*, the major photoproduct of thymidylyl-(3′-5′)-deoxyadenosine
    • Zhao, X., Nadji, S., Kao, J. L.-F., and Taylor, J.-S. (1996) The structure of d(TpA)*, the major photoproduct of thymidylyl-(3′-5′)-deoxyadenosine. Nucleic Acids Res. 24, 1554-1560.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1554-1560
    • Zhao, X.1    Nadji, S.2    Kao, J.L.-F.3    Taylor, J.-S.4
  • 8
    • 0000177002 scopus 로고
    • (Morrison, H., Ed.) John Wiley, New York
    • Cadet, J., and Vigny, P. (1990) in Bioorganic Photochemistry (Morrison, H., Ed.) Vol. 1, p 1, John Wiley, New York.
    • (1990) Bioorganic Photochemistry , vol.1 , pp. 1
    • Cadet, J.1    Vigny, P.2
  • 9
    • 0000723716 scopus 로고
    • Sunlight and skin cancer
    • Taylor, J.-S. (1995) Sunlight and skin cancer. IUPAC 67, 183-190.
    • (1995) IUPAC , vol.67 , pp. 183-190
    • Taylor, J.-S.1
  • 10
    • 0029877031 scopus 로고    scopus 로고
    • Mutation spectra of TA*, the major photoproduct of thymidylyl-(3′-5′)-deoxyadenosine, in Escherichia coli under SOS conditions
    • Zhao, X., and Taylor, J.-S. (1996) Mutation spectra of TA*, the major photoproduct of thymidylyl-(3′-5′)-deoxyadenosine, in Escherichia coli under SOS conditions. Nucleic Acids Res. 24, 1561-1565.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1561-1565
    • Zhao, X.1    Taylor, J.-S.2
  • 11
    • 0024584032 scopus 로고
    • Enzymatic analysis of isomeric trithymidylates containing ultraviolet light-induced cyclobutane pyrimidine dimers. II. Phosphorylation by phage T4 polynucleotide kinase
    • Weinfeld, M., Liuzzi, M., and Paterson, M. C. (1989) Enzymatic analysis of isomeric trithymidylates containing ultraviolet light-induced cyclobutane pyrimidine dimers. II. Phosphorylation by phage T4 polynucleotide kinase. J. Biol. Chem. 264, 6364-6370.
    • (1989) J. Biol. Chem. , vol.264 , pp. 6364-6370
    • Weinfeld, M.1    Liuzzi, M.2    Paterson, M.C.3
  • 13
    • 0029791184 scopus 로고    scopus 로고
    • Assay of different photoproducts after UVA, B and C irradiation of DNA and human skin explants
    • Bykov, V. J., and Hemminki, K. (1996) Assay of different photoproducts after UVA, B and C irradiation of DNA and human skin explants. Carcinogenesis 17, 1949-1955.
    • (1996) Carcinogenesis , vol.17 , pp. 1949-1955
    • Bykov, V.J.1    Hemminki, K.2
  • 15
    • 0029587660 scopus 로고
    • UV-induced photoproducts in human skin explants analysed by TLC and HPLC-radioactivity detection
    • Bykov, V. J., and Hemminki, K. (1995) UV-induced photoproducts in human skin explants analysed by TLC and HPLC-radioactivity detection. Carcinogenesis 16, 3015-3019.
    • (1995) Carcinogenesis , vol.16 , pp. 3015-3019
    • Bykov, V.J.1    Hemminki, K.2
  • 16
    • 0031903548 scopus 로고    scopus 로고
    • High levels of dipyrimidine dimers are induced in human skin by solar-simulating UV radiation
    • Bykov, V. J., Jansen, C. T., and Hemminki, K. (1998) High levels of dipyrimidine dimers are induced in human skin by solar-simulating UV radiation. Cancer Epidemiol. Biomarkers Prev. 7, 199-202.
    • (1998) Cancer Epidemiol. Biomarkers Prev. , vol.7 , pp. 199-202
    • Bykov, V.J.1    Jansen, C.T.2    Hemminki, K.3
  • 17
    • 0032528171 scopus 로고    scopus 로고
    • Ultraviolet B-induced DNA damage in human skin and its modulation by a sunscreen
    • Bykov, V. J., Marcusson, J. A., and Hemminki, K. (1998) Ultraviolet B-induced DNA damage in human skin and its modulation by a sunscreen. Cancer Res. 58, 2961-2964.
    • (1998) Cancer Res. , vol.58 , pp. 2961-2964
    • Bykov, V.J.1    Marcusson, J.A.2    Hemminki, K.3
  • 18
    • 0000865196 scopus 로고    scopus 로고
    • Structure determination of isomeric hexadeoxynucleotide photoproducts by high-field NMR and fast atom bombardment/tandem mass spectrometry
    • Vollmer, D., Zhao, X., Taylor, J.-S., and Gross, M. L. (1997) Structure determination of isomeric hexadeoxynucleotide photoproducts by high-field NMR and fast atom bombardment/tandem mass spectrometry. Int. J. Mass Spectrom. Ion Processes 165/166, 487-496.
    • (1997) Int. J. Mass Spectrom. Ion Processes , vol.165-166 , pp. 487-496
    • Vollmer, D.1    Zhao, X.2    Taylor, J.-S.3    Gross, M.L.4
  • 19
    • 0021020416 scopus 로고
    • Rapid quantitation of ultraviolet-induced thymine-containing dimers in human cell DNA by reversed-phase high-performance liquid chromatography
    • Cadet, J., Gentner, N. E., Rozga, B., and Paterson, M. C. (1983) Rapid quantitation of ultraviolet-induced thymine-containing dimers in human cell DNA by reversed-phase high-performance liquid chromatography. J. Chromatogr. 280, 99-108.
    • (1983) J. Chromatogr. , vol.280 , pp. 99-108
    • Cadet, J.1    Gentner, N.E.2    Rozga, B.3    Paterson, M.C.4
  • 20
    • 0033468753 scopus 로고    scopus 로고
    • Differentiation of isomeric photomodified oligodeoxynucleotides by fragmentation of ions produced by matrix-assisted laser desorption ionization and electrospray ionization
    • Wang, Y., Taylor, J.-S., and Gross, M. L. (1999) Differentiation of isomeric photomodified oligodeoxynucleotides by fragmentation of ions produced by matrix-assisted laser desorption ionization and electrospray ionization. J. Am. Soc. Mass Spectrom. 10, 329-338.
    • (1999) J. Am. Soc. Mass Spectrom. , vol.10 , pp. 329-338
    • Wang, Y.1    Taylor, J.-S.2    Gross, M.L.3
  • 21
    • 0028675623 scopus 로고
    • A new mass spectrometric approach to detect modifications in DNA
    • Janning, P., Schrader, W., and Linscheid, M. (1994) A new mass spectrometric approach to detect modifications in DNA. Rapid Commun. Mass Spectrom. 8, 1035-1040.
    • (1994) Rapid Commun. Mass Spectrom. , vol.8 , pp. 1035-1040
    • Janning, P.1    Schrader, W.2    Linscheid, M.3
  • 22
    • 0002571496 scopus 로고
    • (Linn, S., and Roberts, R. J., Eds.) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Shishido, K., and Ando, T. (1982) in Nucleases (Linn, S., and Roberts, R. J., Eds.) pp 155-209, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1982) Nucleases , pp. 155-209
    • Shishido, K.1    Ando, T.2
  • 23
    • 0027647827 scopus 로고
    • Detecting DNA damage
    • Cadet, J., and Weinfeld, M. (1993) Detecting DNA damage. Anal. Chem. 65, 675A-682A.
    • (1993) Anal. Chem. , vol.65
    • Cadet, J.1    Weinfeld, M.2
  • 24
    • 0032232149 scopus 로고    scopus 로고
    • Characterization of labelled oligonucleotides using enzymatic digestion and tandem mass spectrometry
    • Wu, H., Morgan, R. L., and Aboleneen, H. (1998) Characterization of labelled oligonucleotides using enzymatic digestion and tandem mass spectrometry. J. Am. Soc. Mass Spectrom. 9, 660-667.
    • (1998) J. Am. Soc. Mass Spectrom. , vol.9 , pp. 660-667
    • Wu, H.1    Morgan, R.L.2    Aboleneen, H.3
  • 25
    • 0032517343 scopus 로고    scopus 로고
    • Characterization and chemical stability of photooxidized oligonucleotides that contain 2,2-diamino-4-(2-deoxy-D-erythro-pentofuranosyl)amino-5(2H)-oxazolone
    • Gasparutto, D., Ravanat, J.-L., Gerot, O., and Cadet, J. (1998) Characterization and chemical stability of photooxidized oligonucleotides that contain 2,2-diamino-4-[(2-deoxy-D-erythro-pentofuranosyl)amino-5(2H)-oxazolone. J. Am. Chem. Soc. 120, 10283-10286.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 10283-10286
    • Gasparutto, D.1    Ravanat, J.-L.2    Gerot, O.3    Cadet, J.4
  • 26
    • 0032812239 scopus 로고    scopus 로고
    • Synthesis of oligonucleotides containing the (4R) and (4S) diastereoisomers of 4,8-dihydro-4-hydroxy-8-oxo-2′-deoxyguanosine
    • Romieu, A., Gasparutto, D., Molko, D., Ravanat, J.-L., and Cadet, J. (1999) Synthesis of oligonucleotides containing the (4R) and (4S) diastereoisomers of 4,8-dihydro-4-hydroxy-8-oxo-2′-deoxyguanosine. Eur. J. Org. Chem., 49-56.
    • (1999) Eur. J. Org. Chem. , pp. 49-56
    • Romieu, A.1    Gasparutto, D.2    Molko, D.3    Ravanat, J.-L.4    Cadet, J.5
  • 27
    • 0000964269 scopus 로고    scopus 로고
    • Site-specific introduction of (5′S)-5′,8-cyclo-2′-deoxyadenosine into oligodeoxyribonucleotides
    • Romieu, A., Gasparutto, D., Molko, D., and Cadet, J. (1998) Site-specific introduction of (5′S)-5′,8-cyclo-2′-deoxyadenosine into oligodeoxyribonucleotides. J. Org. Chem. 83, 5245-5249.
    • (1998) J. Org. Chem. , vol.83 , pp. 5245-5249
    • Romieu, A.1    Gasparutto, D.2    Molko, D.3    Cadet, J.4
  • 28
    • 10244240569 scopus 로고    scopus 로고
    • Analysis of DNA adducts in DNA hydrolysates by capillary zone electrophoresis and capillary zone electrophoresis-electrospray mass spectrometry
    • Deforce, D. L., Ryniers, F. P., van den Eeckhout, E. G., Lemiere, F., and Esmans, E. L. (1996) Analysis of DNA adducts in DNA hydrolysates by capillary zone electrophoresis and capillary zone electrophoresis-electrospray mass spectrometry. Anal. Chem. 68, 3575-3584.
    • (1996) Anal. Chem. , vol.68 , pp. 3575-3584
    • Deforce, D.L.1    Ryniers, F.P.2    Van Den Eeckhout, E.G.3    Lemiere, F.4    Esmans, E.L.5
  • 29
    • 0031878394 scopus 로고    scopus 로고
    • Analysis of the DNA adducts of phenyl glycidyl ether in a calf thymus DNA hydrolysate by capillary zone electrophoresis-electrospray mass spectrometry: Evidence for phosphate alkylation
    • Deforce, D. L., Lemiere, F., Hoes, I., Millecamps, R. E., Esmans, E. L., De Leenheer, A., and Van den Eeckhout, E. G. (1998) Analysis of the DNA adducts of phenyl glycidyl ether in a calf thymus DNA hydrolysate by capillary zone electrophoresis-electrospray mass spectrometry: evidence for phosphate alkylation. Carcinogenesis 19, 1077-1086.
    • (1998) Carcinogenesis , vol.19 , pp. 1077-1086
    • Deforce, D.L.1    Lemiere, F.2    Hoes, I.3    Millecamps, R.E.4    Esmans, E.L.5    De Leenheer, A.6    Van Den Eeckhout, E.G.7
  • 30
    • 0031850427 scopus 로고    scopus 로고
    • Recognition of single-stranded DNA by nuclease P1: High-resolution crystal structures of complexes with substrate analogs
    • Romier, C., Dominguez, R., Lahm, A., Dahl, O., and Suck, D. (1998) Recognition of single-stranded DNA by nuclease P1: high-resolution crystal structures of complexes with substrate analogs. Proteins 32, 414-424.
    • (1998) Proteins , vol.32 , pp. 414-424
    • Romier, C.1    Dominguez, R.2    Lahm, A.3    Dahl, O.4    Suck, D.5
  • 31
    • 0025763145 scopus 로고
    • Crystal structure of Penicillium citrinum P1 nuclease at 2.8 Å resolution
    • Volbeda, A., Lahm, A., Sakiyama, F., and Suck, D. (1991) Crystal structure of Penicillium citrinum P1 nuclease at 2.8 Å resolution. EMBO J. 10, 1607-1618.
    • (1991) EMBO J. , vol.10 , pp. 1607-1618
    • Volbeda, A.1    Lahm, A.2    Sakiyama, F.3    Suck, D.4
  • 32
    • 0027205006 scopus 로고
    • Influence of nucleic acid base aromaticity on substrate reactivity with enzymes acting on single-stranded DNA
    • Weinfeld, M., Soderlind, K. J., and Buchko, G. W. (1993) Influence of nucleic acid base aromaticity on substrate reactivity with enzymes acting on single-stranded DNA. Nucleic Acids Res. 21, 621-626.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 621-626
    • Weinfeld, M.1    Soderlind, K.J.2    Buchko, G.W.3
  • 33
    • 0024580615 scopus 로고
    • Enzymatic analysis of isomeric trithymidylates containing ultraviolet light-induced cyclobutane pyrimidine dimers. I. Nuclease P1-mediated hydrolysis of the intradimer phosphodiester linkage
    • Liuzzi, M., Weinfeld, M., and Paterson, M. C. (1989) Enzymatic analysis of isomeric trithymidylates containing ultraviolet light-induced cyclobutane pyrimidine dimers. I. Nuclease P1-mediated hydrolysis of the intradimer phosphodiester linkage. J. Biol. Chem. 264, 6355-6363.
    • (1989) J. Biol. Chem. , vol.264 , pp. 6355-6363
    • Liuzzi, M.1    Weinfeld, M.2    Paterson, M.C.3
  • 35
    • 0014024949 scopus 로고
    • Cyclobutane-type pyrimidine dimers in polynucleotides
    • Setlow, R. B. (1966) Cyclobutane-type pyrimidine dimers in polynucleotides. Science 153, 379-386.
    • (1966) Science , vol.153 , pp. 379-386
    • Setlow, R.B.1
  • 36
    • 0024341026 scopus 로고
    • Selective hydrolysis by exo- and endonucleases of phosphodiester bonds adjacent to an apurinic site
    • Weinfeld, M., Liuzzi, M., and Paterson, M. C. (1989) Selective hydrolysis by exo- and endonucleases of phosphodiester bonds adjacent to an apurinic site. Nucleic Acids Res. 17, 3735-3745.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3735-3745
    • Weinfeld, M.1    Liuzzi, M.2    Paterson, M.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.