메뉴 건너뛰기




Volumn 16, Issue 11, 1999, Pages 1511-1520

Potentials and limitations of histone repeat sequences for phylogenetic reconstruction of Sophophora

Author keywords

Drosophila; Molecular evolution; Promoter; Systematics

Indexed keywords

HISTONE;

EID: 0032738259     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026063     Document Type: Article
Times cited : (12)

References (48)
  • 1
    • 0027263312 scopus 로고
    • Evolution of the ADH locus in the Drosophila-willistoni group - The loss of an intron, and shift in codon usage
    • ANDERSON, C. L., E. A. CAREW, and J. R. POWELL. 1993. Evolution of the ADH locus in the Drosophila-willistoni group - the loss of an intron, and shift in codon usage. Mol. Biol. Evol. 10:605-618.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 605-618
    • Anderson, C.L.1    Carew, E.A.2    Powell, J.R.3
  • 2
    • 0028899937 scopus 로고
    • Promoter elements in Drosophila melanogaster
    • ARKHIPOVA, I. R. 1995. Promoter elements in Drosophila melanogaster. Genetics 139:1359-1369.
    • (1995) Genetics , vol.139 , pp. 1359-1369
    • Arkhipova, I.R.1
  • 3
    • 0028105007 scopus 로고
    • Phylogeny of the Drosophila obscura species group deduced from mitochondrial DNA sequences
    • BARRIO, E., A. LATORRE, and A. MOYA. 1994. Phylogeny of the Drosophila obscura species group deduced from mitochondrial DNA sequences. J. Mol. Evol. 39:478-488.
    • (1994) J. Mol. Evol. , vol.39 , pp. 478-488
    • Barrio, E.1    Latorre, A.2    Moya, A.3
  • 4
    • 0025254537 scopus 로고
    • Phylogenetic relationships among Tetrahymena species determined using the polymerase chain reaction
    • BRUNK, C. F., R. W. KAHN, and L. A. SADLER. 1990. Phylogenetic relationships among Tetrahymena species determined using the polymerase chain reaction. J. Mol. Evol. 30:290-297.
    • (1990) J. Mol. Evol. , vol.30 , pp. 290-297
    • Brunk, C.F.1    Kahn, R.W.2    Sadler, L.A.3
  • 5
    • 0029952979 scopus 로고    scopus 로고
    • A molecular phylogeny for the Drosophila melanogaster subgroup and the problem of polymorphism data
    • CACCONE, A., N. MORIYAMA, J. M. GLEASON, L. NIGRO, and J. R. POWELL. 1996. A molecular phylogeny for the Drosophila melanogaster subgroup and the problem of polymorphism data. Mol. Biol. Evol. 13:1224-1232.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1224-1232
    • Caccone, A.1    Moriyama, N.2    Gleason, J.M.3    Nigro, L.4    Powell, J.R.5
  • 6
    • 0027359608 scopus 로고
    • Histones and histone genes in higher plants: Structure and genomic organization
    • CHABOUTE, M. E., N. CHAUBET, C. GIGOT, and G. PHILIPPS. 1993. Histones and histone genes in higher plants: structure and genomic organization. Biochimie 75:523-531.
    • (1993) Biochimie , vol.75 , pp. 523-531
    • Chaboute, M.E.1    Chaubet, N.2    Gigot, C.3    Philipps, G.4
  • 7
    • 0030063546 scopus 로고    scopus 로고
    • Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila
    • CLARK, A. G., B. G. LEICHT, and S. V. MUSE. 1996. Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila. Mol. Biol. Evol. 13:471-482.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 471-482
    • Clark, A.G.1    Leicht, B.G.2    Muse, S.V.3
  • 8
    • 0020327360 scopus 로고
    • Dynamics of concerted evolution of ribosomal DNA and histone gene families in the melanogaster species subgroup of Drosophila
    • COEN, E., T. STRACHAN, and G. DOVER. 1982. Dynamics of concerted evolution of ribosomal DNA and histone gene families in the melanogaster species subgroup of Drosophila. J. Mol. Biol. 158:17-35.
    • (1982) J. Mol. Biol. , vol.158 , pp. 17-35
    • Coen, E.1    Strachan, T.2    Dover, G.3
  • 9
    • 0021270025 scopus 로고
    • Nucleotide sequence comparison of the Adh gene in three Drosophilids
    • COHN, V. H., M. A. THOMPSON, and G. P. MOORE. 1984. Nucleotide sequence comparison of the Adh gene in three Drosophilids. J. Mol. Evol. 20:31-37.
    • (1984) J. Mol. Evol. , vol.20 , pp. 31-37
    • Cohn, V.H.1    Thompson, M.A.2    Moore, G.P.3
  • 10
    • 0027164567 scopus 로고
    • The distribution and spreading of rare variants in the histone multigene family of Drosophila melanogaster
    • COLBY, C., and S. M. WILLIAMS. 1993. The distribution and spreading of rare variants in the histone multigene family of Drosophila melanogaster. Genetics 135:127-133.
    • (1993) Genetics , vol.135 , pp. 127-133
    • Colby, C.1    Williams, S.M.2
  • 11
    • 0030075368 scopus 로고    scopus 로고
    • A review of the use of ribosomal DNA (rDNA) to differentiate among cryptic Anopheles species
    • COLLINS, F. H., and S. M. PASKEWITZ. 1996. A review of the use of ribosomal DNA (rDNA) to differentiate among cryptic Anopheles species. Insect Mol. Biol. 5:1-9.
    • (1996) Insect Mol. Biol. , vol.5 , pp. 1-9
    • Collins, F.H.1    Paskewitz, S.M.2
  • 12
    • 0022520431 scopus 로고
    • The distribution of P-element sequences in Drosophila: The willistoni and saltans species groups
    • DANIELS, S. B., and L. D. STRAUSBAUGH. 1986. The distribution of P-element sequences in Drosophila: the willistoni and saltans species groups. J. Mol. Evol. 23:138-148.
    • (1986) J. Mol. Evol. , vol.23 , pp. 138-148
    • Daniels, S.B.1    Strausbaugh, L.D.2
  • 13
    • 0031975297 scopus 로고    scopus 로고
    • Organization and nucleotide sequence of the cluster of five histone genes in the polichaete worm Chaetopterus variopedatus: First record of a H1 histone gene in the phylum Annelida
    • DEL GAUDIO, R., N. POTENZA, P. STEFANONI, M. L. CHIUSANO, and G. GERACI. 1998. Organization and nucleotide sequence of the cluster of five histone genes in the polichaete worm Chaetopterus variopedatus: first record of a H1 histone gene in the phylum Annelida. J. Mol. Evol. 46:64-73.
    • (1998) J. Mol. Evol. , vol.46 , pp. 64-73
    • Del Gaudio, R.1    Potenza, N.2    Stefanoni, P.3    Chiusano, M.L.4    Geraci, G.5
  • 14
    • 0023478742 scopus 로고
    • Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila
    • DESALLE, R., T. FREEDMAN, E. M. PRAGER, and A. C. WILSON. 1987. Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila. J. Mol. Evol. 26:157-164.
    • (1987) J. Mol. Evol. , vol.26 , pp. 157-164
    • Desalle, R.1    Freedman, T.2    Prager, E.M.3    Wilson, A.C.4
  • 15
    • 0022438479 scopus 로고
    • Drosophila virilis histone gene clusters lacking H1 coding segments
    • DOMIER, L. L., J. J. RIVARD, L. M. SABATINI, and M. BLUMFIELD. 1986. Drosophila virilis histone gene clusters lacking H1 coding segments. J. Mol. Evol. 23:149-158.
    • (1986) J. Mol. Evol. , vol.23 , pp. 149-158
    • Domier, L.L.1    Rivard, J.J.2    Sabatini, L.M.3    Blumfield, M.4
  • 16
    • 0028870386 scopus 로고
    • Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup
    • EICKBUSH, D. G., and T. H. EICKBUSH. 1995. Vertical transmission of the retrotransposable elements R1 and R2 during the evolution of the Drosophila melanogaster species subgroup. Genetics 139:671-684.
    • (1995) Genetics , vol.139 , pp. 671-684
    • Eickbush, D.G.1    Eickbush, T.H.2
  • 17
    • 0029099758 scopus 로고
    • The organization structure and regulatory elements of Chlamydomonas histone genes reveal features linking plant and animal genes
    • FABRY, S., K. MULLER, A. LINDAUER, P. BUM PARK, T. CORNELIUS, and R. SCHMITT. 1995. The organization structure and regulatory elements of Chlamydomonas histone genes reveal features linking plant and animal genes. Curr. Genet. 28:333-345.
    • (1995) Curr. Genet. , vol.28 , pp. 333-345
    • Fabry, S.1    Muller, K.2    Lindauer, A.3    Bum Park, P.4    Cornelius, T.5    Schmitt, R.6
  • 18
    • 84991160495 scopus 로고
    • Histone gene transposition in the phylogeny of the Drosophila obscura group
    • FELGER, I., and W. PINSKER. 1986. Histone gene transposition in the phylogeny of the Drosophila obscura group. Z. Zool. Syst. Evol. 25:127-140.
    • (1986) Z. Zool. Syst. Evol. , vol.25 , pp. 127-140
    • Felger, I.1    Pinsker, W.2
  • 19
    • 0027471782 scopus 로고
    • Low codon bias and high rates of synonymous substitution in Drosophila hydei and drosophila melanogaster histone genes
    • FITCH, D. H. A., and L. D. STRAUSBAUGH. 1993. Low codon bias and high rates of synonymous substitution in Drosophila hydei and Drosophila melanogaster histone genes. Mol. Biol. Evol. 10:397-413.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 397-413
    • Fitch, D.H.A.1    Strausbaugh, L.D.2
  • 20
    • 0025298017 scopus 로고
    • On the origins of tandemly repeated genes: Does histone gene copy number in drosophila reflect chromosomal location?
    • FITCH, D. H. A., L. D. STRAUSBAUGH, and V. BARRETT. 1990. On the origins of tandemly repeated genes: does histone gene copy number in Drosophila reflect chromosomal location? Chromosoma 99:118-124.
    • (1990) Chromosoma , vol.99 , pp. 118-124
    • Fitch, D.H.A.1    Strausbaugh, L.D.2    Barrett, V.3
  • 22
    • 0026006257 scopus 로고
    • The organization, localization and nucleotide sequence of the histone genes of the midge Chironomus thummi
    • HANKELN, T, and E. R. SCHMIDT. 1991. The organization, localization and nucleotide sequence of the histone genes of the midge Chironomus thummi. Chromosoma 101:25-31.
    • (1991) Chromosoma , vol.101 , pp. 25-31
    • Hankeln, T.1    Schmidt, E.R.2
  • 23
    • 0027178798 scopus 로고
    • Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex
    • HEY, J., and R. M. KLIMAN. 1993. Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. Mol. Biol. Evol. 10:804-822.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 804-822
    • Hey, J.1    Kliman, R.M.2
  • 24
    • 0029976603 scopus 로고    scopus 로고
    • Using Clustal for multiple sequence alignments
    • HIGGINS, D. G., J. D. THOMPSON, and T. J. GIBSON. 1996. Using Clustal for multiple sequence alignments. Meth. Enzymol. 266:383-402.
    • (1996) Meth. Enzymol. , vol.266 , pp. 383-402
    • Higgins, D.G.1    Thompson, J.D.2    Gibson, T.J.3
  • 25
    • 0027978116 scopus 로고
    • DNA-based methods for the identification of insect vectors
    • HILL, S. M., and J. M. CRAMPTON. 1994. DNA-based methods for the identification of insect vectors. Ann. Trop. Med. Parasitol. 88:227-250.
    • (1994) Ann. Trop. Med. Parasitol. , vol.88 , pp. 227-250
    • Hill, S.M.1    Crampton, J.M.2
  • 27
    • 0025309738 scopus 로고
    • Isolation and characterization of a Drosophila hydei histone DNA repeat unit
    • KREMER, H., and W. HENNIG. 1990. Isolation and characterization of a Drosophila hydei histone DNA repeat unit. Nucleic Acids Res. 18:1573-1580.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1573-1580
    • Kremer, H.1    Hennig, W.2
  • 28
    • 0028222134 scopus 로고
    • Phylogeny of Drosophila and related genera inferred from the nucleotide sequence of the Cu,Zn Sod gene
    • KWIATOWSKI, J., D. SKARECKY, K. BAILEY, and F. J. AYALA. 1994. Phylogeny of Drosophila and related genera inferred from the nucleotide sequence of the Cu,Zn Sod Gene. J. Mol. Evol. 38:443-454.
    • (1994) J. Mol. Evol. , vol.38 , pp. 443-454
    • Kwiatowski, J.1    Skarecky, D.2    Bailey, K.3    Ayala, F.J.4
  • 29
    • 0017584322 scopus 로고
    • The organization of the histone genes in Drosophila melanogaster: Functional and evolutionary implications
    • LIFTON, R. P., M. L. GOLDBERG, R. W. KARP, and D. S. HOGNESS. 1978. The organization of the histone genes in Drosophila melanogaster: functional and evolutionary implications. Cold Spring Harb. Symp. Quant. Biol. 42:1047-1051.
    • (1978) Cold Spring Harb. Symp. Quant. Biol. , vol.42 , pp. 1047-1051
    • Lifton, R.P.1    Goldberg, M.L.2    Karp, R.W.3    Hogness, D.S.4
  • 30
    • 0028277835 scopus 로고
    • Aspects of nonrandom turnover involved in the concerted evolution of intergenic spacers within the ribosomal DNA of Drosophila melanogaster
    • LINARES, A. R., T. BOWEN, and G. A. DOVER. 1994. Aspects of nonrandom turnover involved in the concerted evolution of intergenic spacers within the ribosomal DNA of Drosophila melanogaster. J. Mol. Evol. 39:151-159.
    • (1994) J. Mol. Evol. , vol.39 , pp. 151-159
    • Linares, A.R.1    Bowen, T.2    Dover, G.A.3
  • 31
    • 0032559280 scopus 로고    scopus 로고
    • The coming of age of molecular systematics
    • MALEY, L. E., and C. R. MARSHALL. 1998. The coming of age of molecular systematics. Science 279:505-506.
    • (1998) Science , vol.279 , pp. 505-506
    • Maley, L.E.1    Marshall, C.R.2
  • 32
    • 0030469771 scopus 로고    scopus 로고
    • The sequence and organization of the core histone H3 and H4 genes in the early branching amitochondriate protist Trichomonas vaginalis
    • MARINETS, A., M. MULLER, P. J. JOHNSON, J. KULDA, O. SCHEINER, G. WIEDERMANN, and M. DUCHÊNE. 1996. The sequence and organization of the core histone H3 and H4 genes in the early branching amitochondriate protist Trichomonas vaginalis. J. Mol. Evol. 43:563-571.
    • (1996) J. Mol. Evol. , vol.43 , pp. 563-571
    • Marinets, A.1    Muller, M.2    Johnson, P.J.3    Kulda, J.4    Scheiner, O.5    Wiedermann, G.6    Duchêne, M.7
  • 33
    • 0026048809 scopus 로고
    • Evolution of the transposable element mariner in Drosophila species
    • MARUYANA, K., and D. L. HARTL. 1991. Evolution of the transposable element mariner in Drosophila species. Genetics 128:319-329.
    • (1991) Genetics , vol.128 , pp. 319-329
    • Maruyana, K.1    Hartl, D.L.2
  • 34
    • 0024523742 scopus 로고
    • Nucleotide variation and divergence in the histone multigene family in Drosophila melanogaster
    • MATSUO, Y., and T. YAMAZAKI. 1989a. Nucleotide variation and divergence in the histone multigene family in Drosophila melanogaster. Genetics 122:87-97.
    • (1989) Genetics , vol.122 , pp. 87-97
    • Matsuo, Y.1    Yamazaki, T.2
  • 35
    • 0024501274 scopus 로고
    • TRNA derived insertion element in histone gene repeating unit of Drosophila melanogaster
    • _. 1989b. tRNA derived insertion element in histone gene repeating unit of Drosophila melanogaster. Nucleic Acids Res. 17:225-238.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 225-238
  • 36
    • 0020993619 scopus 로고
    • Expression and organization of histone genes
    • MAXSON, R., R. COHN, and L. KEDES. 1983. Expression and organization of histone genes. Ann. Rev. Genet. 17:239-277.
    • (1983) Ann. Rev. Genet. , vol.17 , pp. 239-277
    • Maxson, R.1    Cohn, R.2    Kedes, L.3
  • 37
    • 0029913914 scopus 로고    scopus 로고
    • Molecular evolution of the 5′-flanking regions of the duplicated Amy genes in Drosophila melanogaster species subgroup
    • OKUYAMA, E., H. SHIBATA, H. TACHIDA, and T. YAMAZAKI. 1996. Molecular evolution of the 5′-flanking regions of the duplicated Amy genes in Drosophila melanogaster species subgroup. Mol. Biol. Evol. 13:574-583.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 574-583
    • Okuyama, E.1    Shibata, H.2    Tachida, H.3    Yamazaki, T.4
  • 38
    • 0026437574 scopus 로고
    • Evolution of the threonine-glycine repeat region of the period gene in the melanogaster species subgroup of Drosophila
    • PEIXOTO, A. A., R. COSTA, D. A. WHEELER, J. C. HALL, and C. P. KRYIACOU. 1992. Evolution of the threonine-glycine repeat region of the period gene in the melanogaster species subgroup of Drosophila. J. Mol. Evol. 35:411-419.
    • (1992) J. Mol. Evol. , vol.35 , pp. 411-419
    • Peixoto, A.A.1    Costa, R.2    Wheeler, D.A.3    Hall, J.C.4    Kryiacou, C.P.5
  • 39
    • 0026278999 scopus 로고
    • Molecular phylogeny of the subgenus Sophophora of Drosophila derived from the large subunit of ribosomal RNA sequences
    • PÉLANDAKIS, M., D. G. HIGGINS, and M. SOLIGNAC. 1991. Molecular phylogeny of the subgenus Sophophora of Drosophila derived from the large subunit of ribosomal RNA sequences. Genetica 84:87-94.
    • (1991) Genetica , vol.84 , pp. 87-94
    • Pélandakis, M.1    Higgins, D.G.2    Solignac, M.3
  • 40
    • 0021947243 scopus 로고
    • Genomic organization and nucleotide sequence of two distinct histone gene clusters from Xenopus laevis: Identification of novel conserved upstream sequence elements
    • PERRY, M., G. H. THOMSEN, and R. G. ROEDER. 1985. Genomic organization and nucleotide sequence of two distinct histone gene clusters from Xenopus laevis: identification of novel conserved upstream sequence elements. J. Mol. Biol. 185:479-499.
    • (1985) J. Mol. Biol. , vol.185 , pp. 479-499
    • Perry, M.1    Thomsen, G.H.2    Roeder, R.G.3
  • 41
    • 0028837251 scopus 로고
    • Rapid evolution of courtship song pattern in Drosophila willistoni sibling species
    • RITCHIE, M. G., and J. M. GLEASON. 1995. Rapid evolution of courtship song pattern in Drosophila willistoni sibling species. J. Evol. Biol. 8:463-497.
    • (1995) J. Evol. Biol. , vol.8 , pp. 463-497
    • Ritchie, M.G.1    Gleason, J.M.2
  • 42
    • 0025599921 scopus 로고
    • Evolution of drosophila mitochondrial DNA and the history of the melanogaster subgroup
    • SATTA, Y., and N. TAKAHATA. 1990. Evolution of Drosophila mitochondrial DNA and the history of the melanogaster subgroup. Proc. Natl. Acad. Sci. USA 87:9558-9562.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 9558-9562
    • Satta, Y.1    Takahata, N.2
  • 46
    • 0023705516 scopus 로고
    • Conservation of histone H2A/H2B intergene regions: A role for the H2B specific element in divergent transcription
    • STURM, R. A., S. DALTON, and J. R. E. WELLS. 1988. Conservation of histone H2A/H2B intergene regions: a role for the H2B specific element in divergent transcription. Nucleic Acids Res. 16:8571-8586.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 8571-8586
    • Sturm, R.A.1    Dalton, S.2    Wells, J.R.E.3
  • 47
    • 0028231021 scopus 로고
    • Phylogenetic analysis of the core histones H2A, H2B, H3, and H4
    • THATCHER, T. H., and M. A. GOROVSKY. 1994. Phylogenetic analysis of the core histones H2A, H2B, H3, and H4. Nucleic Acids Res. 22:174-179.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 174-179
    • Thatcher, T.H.1    Gorovsky, M.A.2
  • 48
    • 0021130416 scopus 로고
    • A phenetic tree of eighteen species of the melanogaster group of Drosophila using allozyme data as compared with classifications based on other criteria
    • TSAKAS, S. C., and L. TSACAS. 1984. A phenetic tree of eighteen species of the melanogaster group of Drosophila using allozyme data as compared with classifications based on other criteria. Genetica 64:139-144.
    • (1984) Genetica , vol.64 , pp. 139-144
    • Tsakas, S.C.1    Tsacas, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.