Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya

International Journal of Systematic Bacteriology

Volumn 49, Issue 4, 1999, Pages 1359-1368

  Nick, Giselle ^a   De Lajudie, Philippe ^b,e,g   Eardly, Bertrand D ^c   Suomalainen, Sini ^d   Paulin, Lars ^d   Zhang, Xiaoping ^a,f   Gillis, Monique ^e   Lindstrom, Kristina ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (Senegal)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

^d UNIVERSITY OF HELSINKI   (Finland)

^e GHENT UNIVERSITY   (Belgium)

^f SICHUAN AGRICULTURAL UNIVERSITY   (China)

^g INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

16S rDNA sequencing; MLEE; SDS PAGE; Sinorhizobium arboris; Sinorhizobium kostiense

Indexed keywords

ARTICLE; BACTERIUM ISOLATION; DNA BASE COMPOSITION; DNA FINGERPRINTING; DOT HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT ROOT; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINORHIZOBIUM; SINORHIZOBIUM ARBORIS; SINORHIZOBIUM KOSTIENSE;

ACACIA SENEGAL; PROSOPIS CHILENSIS; SINORHIZOBIUM ARBORIS; SINORHIZOBIUM KOSTIENSE;

EID: 0032731914     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-4-1359     Document Type: Article

References (43)

1. Amarger, N., Macheret, V. & Laguerre, G. (1997). Rhizobium gallicum sp. nov. and Rhizobium giardinit sp nov., from Phaseolus vulgaris nodules. Int J Syst Bacteriol 47, 996-1006.
2. van Berkum, P., Beyene, D., Bao, G., Campbell, T. A. & Eardly, B. D. (1998). Rhizobium mongolense sp. nov. is one of three rhizobial genotypes identified which nodulate and form nitrogen-fixing symbioses with Medicago ruthenica [(L.) Ledebour]. Int J Syst Bacteriol 48, 13-22.
3. Chen, W. X., Li, G. S., Qi, Y. L., Wang, E. T., Yuan, H. L. & Li, J. L. (1991). Rhizobium huakuii sp. nov. isolated from the root nodules of Astragalus sinicus. Int J Syst Bacteriol 41, 275-280.
4. Chen, W. X., Wang, E. T., Wang, S., Li, Y., Chen, X. & Li, Y. (1995). Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China. Int J Syst Bacteriol 45, 153-159.
5. Chen, W.-X., Tan, Z.-Y., Gao, J.-L, Li, Y. & Wang, E.-T. (1997). Rhizobium hainanense sp. nov , isolated from tropical legumes. Int J Syst Bacteriol 47, 870-873.
6. Dreyfus, B., Garcia, J. L. & Gillis, M. (1988). Characterization of Azorhizobium caulinodans gen. nov., sp. nov., a stem-nodulating nitrogen-fixing bacterium isolated from Sesbania rostrata. Int J Syst Bacteriol 38, 89-98.
7. Eardly, B. D. (1994). Multilocus enzyme electrophoresis methods for the analysis of bacterial population genetic structure. In Methods of Soil Analysis, Part 2. Microbiological and Biochemical Properties, pp. 557-573. Edited by R. W. Weaver, J. S. Angle & P. J. Bottomley. Madison, WI: Soil Science Society of America.
8. Eardly, B. D., Materon, L. A., Smith, N. H., Johnson, D. A., Rumbaugh, M. D. & Selander, R. K. (1990). Genetic structure of natural populations of the nitrogen-fixing bacterium Rhizobium meliloti. Appl Environ Microbiol 56, 187-194.
9. Edwards, U., Rogall, T., Blocker, H., Emde, M. & Bottger, E. C. (1989). Isolation and direct complete nucleotide cetermination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843-7853.
10. Haukka, K. & Lindstrom, K. (1994). Pulsed-field gel electrophoresis for genotypic comparison of Rhizobium bacteria that nodulate leguminous trees. FEMS Microbiol Lett 119, 215-220.
11. Haukka, K., Lindstrȯm, K. & Young, J. P. W. (1996). Diversity of partial 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis. Syst Appl Microbiol 19, 352-359.
12. Hultman, T., Bergh, S., Moks, T. & Uhlén, M. (1991). Bidirectional solid-phase sequencing of in vitro-amplified plasmid DNA. BioTechmques 10, 84-93.
13. Jarvis, B. D. W., Pankhurst, C. E. & Patel, J. J. (1982). Rhizobium loti, a new species of legume root nodule bacteria. Int J Syst Bacteriol 32, 378-380.
14. Jarvis, B. D. W., van Berkum, P., Chen, W. X., Nour, S. M., Fernandez, M. P., Cleyet-Marel, J. C. & Gillis, M. (1997). Transfer of Rhizobium loti, Rhizobium huakuit, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tianshanense to Mesorhizobium gen. nov. Int J Syst Bacteriol 47, 895-898
15. Jordan, D. C. (1984). Family III. Rhizobiaceae Conn 1938. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 234-256. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
16. Kersters, K. & De Ley, J. (1984). Genus III. Agrobacterium Conn 1942. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 244-254. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
17. Kiredjian, M., Holmes, B., Kersters, K., Guilvout, I. & De Ley, J. (1986). Alcaligenes piechaudii, a new species from human clinical specimens and the environment. Int J Syst Bacteriol 36, 282-287.
18. Kuykendall, L D., Saxena, B., Devine, T. E. & Udell, S. E. (1992). Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkann sp. nov. Can J Microbiol 38, 501-505.
19. Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
20. de Lajudie, P., Willems, A., Pot, B. & 7 other authors (1994). Polyphasic taxonomy of rhizobia: emendation of the genus Smorhizobium and description of Smorhizobium meliloti comb, nov., Smorhizobium saheli sp. nov., and Smorhizobium teranga sp. nov. Int J Syst Bacteriol 44, 715-733.
21. de Lajudie, P., Willems, A., Nick, G. & 9 other authors (1998). Characterization of tropical tree rhizobia and description of Mesorhizobium plurifarium sp. nov. Int J Svst Bacteriol 48, 369-382.
22. Lindstrom, K. (1989). Rhizobium galegae, a new species of legume root nodule bacteria. Int J Syst Bacteriol 39, 365-367.
23. Lindstrom, K., Sarsa, M., Polkunen, J. & Kansanen, P. (1985). Symbiotic nitrogen fixation of Rhizobium (Galega) in acid soils and its survival in soil under acid and cold stress. Plant Soil 87, 293-302.
24. Martínez-Romero, E., Segovia, L., Mercante, F. M., Franco, A. A., Graham, P. & Pardo, M. A. (1991). Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. beans and Leucaena sp. trees. Int J Syst Bacteriol 41, 417-426.
25. Nick, G. (1998). Polyphasic taxonomy of rhizobia isolated from tropical tree legumes. PhD thesis. Dissertationes Biocentri Viikki Universitatis Helsingiensis, Department of Applied Chemistry and Microbiology, University of Helsinki.
26. Nick, G., Jussila, M., Hoste, B., Niemi, M., Kaijalainen, S., de Lajudie, P., Gillis, M., de Bruijn, F. J. & Lindstrom, K. (1999). Rhizobia isolated from the root nodules of tropical leguminous trees characterized using DNA-DNA dot-blot hybridisation and rep-PCR. Syst Appl Microbiol (in press).
27. Nour, S. M., Fernandez, M. P., Normand, P. & Cleyet-Marel, J.-C. (1994). Rhizobium ciceri sp. nov., consisting of strains that nodulate chickpeas (Cicer arietmum L.). Int J Syst Bacterial 44, 511-522.
28. Nour, S. M., Cleyet-Marel, J.-C., Normand, P. & Fernandez, M. P. (1995). Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov. Int J Syst Bacieriol 45, 640-648.
29. Ophel, K. & Kerr, A. (1990). Agrobacierium vitis sp. nov. for strains of Agrobacterium biovar 3 from grapevines. Int J Syst Bacteriol 40, 236-241.
30. Page, R, D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
31. Pot, B., Gillis, M., Hoste, B., Van De Velde, A., Bekaert, F., Kersters, K. & De Ley, J. (1989). Intra- and intergeneric relationships of the genus Oceanospirillum. Int J Syst Bacteriol 39, 23-34.
32. Pot, B., Vandamme, P. & Kersters, K. (1994). Analysis of electrophoretic whole organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics, pp. 493-521. Edited by M. Goodfellow & T. O'Donnell. Chichester: Wiley.
33. Ridell, J., Siitonen, A., Paulin, L., Lindroos, O., Korkeala, H. & Albert, M. J. (1995). Characterization of Hafnia alvei by biochemical tests, random amplified polymorphic DNA PCR, and partial sequencing of 16S rRNA gene. J Clin Microbiol 33, 2372-2376.
34. Rome, S., Fernandez, M. P., Brunel, B., Normand, P. & Cleyet-Marel, J.-C. (1996). Sinorhizobium medicae sp nov., isolated from annual Medicago spp. Int J Syst Bacteriol 46, 972-980.
35. Scholia, M. H. & Elkan, G. H. (1984). Rhizobium fredii sp. nov., a fast-growing species that effectively nodulates soybeans. Int J Syst Bacteriol 34, 484-486.
36. Segovia, L., Young, J. P. W. & Martínez-Romero, E. (1993). Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. Int J Syst Bacteriol 43, 374-377.
37. Selander, R. K., Caugant, D. A., Ochman, H., Musser, J. M, Gilmour, M. N. & Whittam, T. S. (1986). Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl Environ Microbiol 51, 873-884.
38. Sneath, P. H. A. & Sokal, R. R. (1973). Numerical Taxonomy. San Francisco: W. H. Freeman.
39. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
40. Vauterin, L. & Vauterin, V. (1992). Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms. Eur Microbiol 1, 37-41.
41. Wang, E. T., van Berkum, P., Beyene, D., Sui, X. H., Dorado, O, Chen, W. X. & Martínez-Romero, E. (1998). Rhizobium huautlense sp. nov., a symbiont of Sesbania herbacea that has a close phylogenetic relationship with Rhizobium galegae. Int J Syst Bacteriol 48, 687-699.
42. Xu, L. M., Ge, C., Cui, Z., Li, J. & Fan, H. (1995). Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans. Int J Syst Bacteriol 45, 706-711.
43. Zhang, X., Harper, R., Karsisto, M. & Lindstrȯm, K. (1991). Diversity of Rhizobium bacteria isolated from the root nodules of leguminous trees. Int J Syst Bacteriol 41, 104-113.