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Volumn 22, Issue 2, 1999, Pages 287-299

Rhizobia isolated from root nodules of tropical leguminous trees characterized using DNA-DNA dot-blot hybridisation and rep-PCR genomic fingerprinting

Author keywords

DNA DNA dot blot hybridisation; DNA DNA reassociation; Fast growing rhizobia; Principal component analysis; Rep PCR genomic fingerprinting; Sinorhizobium

Indexed keywords

ACACIA; ARTICLE; BACTERIUM IDENTIFICATION; DNA FINGERPRINTING; DOT HYBRIDIZATION; KENYA; PLANT ROOT; POLYMERASE CHAIN REACTION; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; RHIZOBIUM; RHIZOBIUM LEGUMINOSARUM; SINORHIZOBIUM FREDII; SPECTROPHOTOMETRY; SUDAN; TAXONOMY; TREE;

EID: 0033041255     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0723-2020(99)80076-9     Document Type: Article
Times cited : (66)

References (34)
  • 1
    • 0000155229 scopus 로고
    • Guanidine methods for total RNA preparation: Single-step RNA isolation from cultured cells or tissues
    • F. M. AUSUBEL, R. BRENT, R. E. KINGSTON, D. D. MOORE, J. G. SEIDMAN, J. A. SMITH, K. STRUHL, eds. Greene Publishing Associates and Wiley-Interscience
    • CHOMCZYNSKI, P., SACHHI, N.: Guanidine methods for total RNA preparation: Single-step RNA isolation from cultured cells or tissues, pp. 4.2.1-4.2.2. In: Current protocols in molecular biology. (F. M. AUSUBEL, R. BRENT, R. E. KINGSTON, D. D. MOORE, J. G. SEIDMAN, J. A. SMITH, K. STRUHL, eds.) Greene Publishing Associates and Wiley-Interscience 1989.
    • (1989) Current Protocols in Molecular Biology , pp. 421-422
    • Chomczynski, P.1    Sachhi, N.2
  • 2
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • DE BRUIJN, F. J.: Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58, 2180-2187 (1992).
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2180-2187
    • De Bruijn, F.J.1
  • 4
    • 0014752996 scopus 로고
    • Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid
    • DE LEY, J.: Reexamination of the association between melting point, buoyant density, and chemical base composition of deoxyribonucleic acid. J. Bacteriol. 101, 737-754 (1970).
    • (1970) J. Bacteriol. , vol.101 , pp. 737-754
    • De Ley, J.1
  • 5
    • 0014713693 scopus 로고
    • The quantitative measurement of DNA hybridization from renaturation rates
    • DE LEY, J., CATTOIR, H., REYNAERTS, A.: The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Biochem. 12:133-142 (1970).
    • (1970) Eur. J. Biochem. , vol.12 , pp. 133-142
    • De Ley, J.1    Cattoir, H.2    Reynaerts, A.3
  • 6
    • 0001498755 scopus 로고
    • Some applications of deoxyribonucleic acid base composition in bacterial taxonomy
    • Antonie van Leeuwenhoek
    • DE LEY, J., VAN MUYLEM, J.: Some applications of deoxyribonucleic acid base composition in bacterial taxonomy. Antonie van Leeuwenhoek J. Microbiol. Serol. 29, 344-358 (1963).
    • (1963) J. Microbiol. Serol. , vol.29 , pp. 344-358
    • De Ley, J.1    Van Muylem, J.2
  • 7
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • FOX, G. E., WISOTZKEY, J. D., JURSTSHUK, P. jr.: How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170 (1992).
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurstshuk P., Jr.3
  • 9
    • 0023987616 scopus 로고
    • Use of DNA reassosiation in bacterial classification
    • GRIMONT, P. A. D.: Use of DNA reassosiation in bacterial classification. Can. J. Microbiol. 34, 541-546 (1988).
    • (1988) Can. J. Microbiol. , vol.34 , pp. 541-546
    • Grimont, P.A.D.1
  • 10
    • 0019293444 scopus 로고
    • Use of principal component analysis in interpretation of deoxiribonucleic acid related-ness
    • GRIMONT, P. A. D., POPOFF, M.: Use of principal component analysis in interpretation of deoxiribonucleic acid related-ness. Curr. Microbiol. 4, 337-342 (1980).
    • (1980) Curr. Microbiol. , vol.4 , pp. 337-342
    • Grimont, P.A.D.1    Popoff, M.2
  • 11
    • 0028353104 scopus 로고
    • Pulsed-field gel electrophoresis for genotypic comparison of Rhizobium bacteria that nodulate leguminous trees
    • HAUKKA, K., LINDSTRÖM, K.: Pulsed-field gel electrophoresis for genotypic comparison of Rhizobium bacteria that nodulate leguminous trees. FEMS Microbiol. Lett. 119, 215-220 (1994).
    • (1994) FEMS Microbiol. Lett. , vol.119 , pp. 215-220
    • Haukka, K.1    Lindström, K.2
  • 12
    • 0029859084 scopus 로고    scopus 로고
    • Diversity of partial 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis
    • HAUKKA, K., LINDSTRÖM, K., YOUNG, J. P. W.: Diversity of partial 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis. System. Appl. Microbiol. 19, 352-359 (1996).
    • (1996) System. Appl. Microbiol. , vol.19 , pp. 352-359
    • Haukka, K.1    Lindström, K.2    Young, J.P.W.3
  • 13
    • 0006583276 scopus 로고
    • DNA reassosiation experiments
    • (E. STACKE-BRANDT and M. GOODFELLOW, eds.), John Wiley & Sons Ltd.
    • JOHNSON, J. L.: DNA reassosiation experiments, pp. 21-44. In: Nucleic acid techniques in bacterial systematics. (E. STACKE-BRANDT and M. GOODFELLOW, eds.), John Wiley & Sons Ltd. (1991)
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 21-44
    • Johnson, J.L.1
  • 14
    • 0027318818 scopus 로고
    • Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains
    • JUDD, A. K., SCHNEIDER, M., SADOWSKY, M. J. DE BRUIJN, F. J.: Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains. Appl. Environ. Microbiol. 59, 1702-1708 (1993).
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1702-1708
    • Judd, A.K.1    Schneider, M.2    Sadowsky, M.J.3    De Bruijn, F.J.4
  • 15
    • 0027952597 scopus 로고
    • Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • LAGUERRE, G., ALLARD, M. R., REVOY, F., AMARGER, N.: Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 60, 56-63 (1994).
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 56-63
    • Laguerre, G.1    Allard, M.R.2    Revoy, F.3    Amarger, N.4
  • 16
    • 0029891660 scopus 로고    scopus 로고
    • Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: Application to Rhizobium leguminosarum and its different biovars
    • LAGUERRE, G., MAVINGUI, P., ALLARD, M. R., CHARNAY, M. P., LOUVRIER, P., MAZURIER, S. I., RIGOTTIER-GOIS, L. AMARGER, N.: Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars. Appl. Environ. Microbiol. 62, 2029-2036 (1996).
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2029-2036
    • Laguerre, G.1    Mavingui, P.2    Allard, M.R.3    Charnay, M.P.4    Louvrier, P.5    Mazurier, S.I.6    Rigottier-Gois, L.7    Amarger, N.8
  • 17
    • 0028140170 scopus 로고
    • Genotypic and phenotypic comparison of chromosomal types within an indigenous soil population of Rhizobium leguminosarum bv. trifolii
    • LEUNG, K., STRAIN, S. R., DE BRUIJN, F. J., BOTTOMLEY, P. J.: Genotypic and phenotypic comparison of chromosomal types within an indigenous soil population of Rhizobium leguminosarum bv. trifolii. Appl. Environ. Microbiol. 60, 416-426 (1994).
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 416-426
    • Leung, K.1    Strain, S.R.2    De Bruijn, F.J.3    Bottomley, P.J.4
  • 18
    • 0022193497 scopus 로고
    • Symbiotic nitrogen fixation of Rhizobium (Galega) in acid soils and its survival in soil under acid and cold stress
    • LINDSTRÖM, K., SARSA, M., POLKUNEN, J., KANSANEN, P.: Symbiotic nitrogen fixation of Rhizobium (Galega) in acid soils and its survival in soil under acid and cold stress. Plant and Soil 87:293-302 (1985).
    • (1985) Plant and Soil , vol.87 , pp. 293-302
    • Lindström, K.1    Sarsa, M.2    Polkunen, J.3    Kansanen, P.4
  • 19
    • 0028242251 scopus 로고
    • Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR
    • LOUWS, F. J., FULBRIGHT, D. W., STEPHENS, C. T., DE BRUIJN, F. J.: Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl. Environ. Microbiol. 60, 2286-2295 (1994).
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2286-2295
    • Louws, F.J.1    Fulbright, D.W.2    Stephens, C.T.3    De Bruijn, F.J.4
  • 20
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • MARMUR, J.: A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 3, 208-218 (1961).
    • (1961) J. Mol. Biol. , vol.3 , pp. 208-218
    • Marmur, J.1
  • 21
    • 73649209034 scopus 로고
    • Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
    • MARMUR, J., DOTY, P.: Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J. Mol. Biol. 5, 109-118 (1962).
    • (1962) J. Mol. Biol. , vol.5 , pp. 109-118
    • Marmur, J.1    Doty, P.2
  • 22
    • 0027965480 scopus 로고
    • Use of repetitive sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium galegae strain and to identify the DNA obtained by sonicating liquid cultures and root nodules
    • NICK, G., LINDSTRÖM, K.: Use of repetitive sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium galegae strain and to identify the DNA obtained by sonicating liquid cultures and root nodules. Syst. Appl. Microbiol. 17, 265-273 (1994).
    • (1994) Syst. Appl. Microbiol. , vol.17 , pp. 265-273
    • Nick, G.1    Lindström, K.2
  • 23
    • 0007630035 scopus 로고    scopus 로고
    • Dissertationes Biocentri Viikki Universitatis Helsingiensis, Departement of Applied Chemistry and Microbiology, University of Helsinki
    • NICK, G. Polyphasic taxonomy of rhizobia isolated from tropical tree legumes. Dissertationes Biocentri Viikki Universitatis Helsingiensis, Departement of Applied Chemistry and Microbiology, University of Helsinki (1998).
    • (1998) Polyphasic Taxonomy of Rhizobia Isolated from Tropical Tree Legumes
    • Nick, G.1
  • 24
    • 0002924916 scopus 로고    scopus 로고
    • Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis
    • (G. CAETANO-ANOLLÉS, P. M. GRESSHOFF, eds.) J. Wiley & Sons, New York
    • RADEMAKER, J. L. W., DE BRUIJN, F.J.: Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis, pp. 151-171. In: DNA-markers: Protocols, applications and overviews (G. CAETANO-ANOLLÉS, P. M. GRESSHOFF, eds.) J. Wiley & Sons, New York 1997.
    • (1997) DNA-markers: Protocols, Applications and Overviews , pp. 151-171
    • Rademaker, J.L.W.1    De Bruijn, F.J.2
  • 25
    • 0002275272 scopus 로고    scopus 로고
    • Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting
    • (A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.) Kluwer Academic Publishers
    • RADEMAKER, J. L. W., LOUWS, F. J., DE BRUIJN, F. J.: Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting, pp. 3.4.3, 1-27. In: Molecular Microbial Ecology Manual (A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.) Kluwer Academic Publishers 1998.
    • (1998) Molecular Microbial Ecology Manual , pp. 343
    • Rademaker, J.L.W.1    Louws, F.J.2    De Bruijn, F.J.3
  • 26
    • 0343342350 scopus 로고    scopus 로고
    • Rep-PCR mediated genomic fingerprinting of rhizobia and computer-assisted phylogenetic pattern analysis
    • SCHNEIDER, M., DE BRUIJN, F.J.: Rep-PCR mediated genomic fingerprinting of rhizobia and computer-assisted phylogenetic pattern analysis. World J. Microbiol. Biotechnol. 12, 163-174 (1996).
    • (1996) World J. Microbiol. Biotechnol. , vol.12 , pp. 163-174
    • Schneider, M.1    De Bruijn, F.J.2
  • 27
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassosiation and 16 S rRNA sequence analysis in the present species definition in bacteriology
    • STACKRBRANDT, E., GOEBEL, B. M.: Taxonomic note: A place for DNA-DNA reassosiation and 16 S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849 (1994).
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackrbrandt, E.1    Goebel, B.M.2
  • 28
    • 0028069712 scopus 로고
    • Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropid
    • VAN BERKUM, P., NAVARRO, R., VARGAS, A. A. T.: Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropid. Appl. Envriron. Microbiol. 60, 554-561 (1994).
    • (1994) Appl. Envriron. Microbiol. , vol.60 , pp. 554-561
    • Van Berkum, P.1    Navarro, R.2    Vargas, A.A.T.3
  • 29
    • 0002032381 scopus 로고
    • Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms
    • VAUTERIN, L., VAUTERIN, P.: Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms. Eur. Microbiol. 1, 37-41 (1992).
    • (1992) Eur. Microbiol. , vol.1 , pp. 37-41
    • Vauterin, L.1    Vauterin, P.2
  • 30
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • VERSALOVIC, J., KOETH, T., LUPSKI, J. R.: Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19, 6823-6831 (1991).
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeth, T.2    Lupski, J.R.3
  • 31
    • 0027992990 scopus 로고
    • Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
    • VERSALOVIC, J., SCHNEIDER, M., DE BRUIJN, F. J., LUPSKI, J. R.: Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Meth. Mol. Cell. Biol. 5, 25-40 (1994).
    • (1994) Meth. Mol. Cell. Biol. , vol.5 , pp. 25-40
    • Versalovic, J.1    Schneider, M.2    De Bruijn, F.J.3    Lupski, J.R.4
  • 32
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • (F. M. AUSUBEL, R. BRENT, R. E. KINGSTON, D. D. MOORE, J. G. SEIDMAN, J. A. SMITH, K. STRUHL eds.) Greene Publishing Associates and Wiley-Interscience
    • WILSON, K.: Preparation of genomic DNA from bacteria, pp. 2.4.1-2.4.5. In: Current protocols in molecular biology (F. M. AUSUBEL, R. BRENT, R. E. KINGSTON, D. D. MOORE, J. G. SEIDMAN, J. A. SMITH, K. STRUHL eds.) Greene Publishing Associates and Wiley-Interscience 1989.
    • (1989) Current Protocols in Molecular Biology , pp. 241-245
    • Wilson, K.1
  • 33
    • 84951601886 scopus 로고
    • Cross-valikatory estimation of the number of components in factor and principal components models
    • WOLD, S.: Cross-valikatory estimation of the number of components in factor and principal components models. Technometrics 20, 397-405 (1978).
    • (1978) Technometrics , vol.20 , pp. 397-405
    • Wold, S.1
  • 34
    • 0026074702 scopus 로고
    • Diversity of Rhizobium bacteria isolated from the root nodules of leguminous trees
    • ZHANG, X., HARPER, R., KARSISTO, M., LINDSTRÖM, K.: Diversity of Rhizobium bacteria isolated from the root nodules of leguminous trees. Int. J. Syst. Bacteriol. 41, 104-113 (1991).
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 104-113
    • Zhang, X.1    Harper, R.2    Karsisto, M.3    Lindström, K.4


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