The fortuitous cloning of retroelement-like sequences from wheat and rye as by-products of a specific polymerase chain reaction

Mitochondrial DNA

Volumn 10, Issue 3, 1999, Pages 173-178

  Campenhout, Steven Van ^a   Volckaert, Guido ^a  

^a LABORATORY OF GENE TECHNOLOGY   (Belgium)

Author keywords

co amplification; repetitive DNA; retrotransposon like element; Secale cerelilr; Triticirrii nestiourn

Indexed keywords

MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIMER DNA; RYE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; WHEAT;

BASE SEQUENCE; BINDING SITES; CLONING, MOLECULAR; GENOME, PLANT; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; RETROELEMENTS; SECALE CEREALE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRITICUM;

EMBRYOPHYTA; HORDEUM VULGARE SUBSP. VULGARE; SECALE CEREALE; TRITICUM AESTIVUM;

EID: 0032713965     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425179909033943     Document Type: Article

References (19)

1. Boeke, J. D. and Corces, V. G. (1989) "Transcription and reverse transcription of retrotransposons", Annu. Rev. Microbiol., 43, 403-434. (Pubitemid 19250053)
2. Flavell, R. B. (1986) "Repetitive DNA and chromosome evolution in plants", Phil. Trans. R. Soc. London (Biol), 312, 227-242.
3. Flavell, R. B., Rimpau, J. and Smith, D. B. (1977) "Repeated sequence DNA relationships in four cereal genomes", Chromosoma, 63, 205-222. (Pubitemid 8189388)
4. Forde, J., Malpica, J. M., Halford, N. G., Shewry, P. R., Anderson, O. D., Greene, F. C. and Miflin, BJ. (1985) "The nucleotide sequence of a HMW glutenin subunit gene located on chromosome 1A of wheat", Nucleic Acids Res., 13, 6817-6832.
5. Francis, H. A., Leitch, A. R. and Koebner, R. M. D. (1995). "Conversion of a RAPD-generated PCR product, containing a novel dispersed repetitive element, into a fast and robust assay for the presence of rye chromatin in wheat.", Theor. Appl. Genet, 90, 636-642.
6. Ghosh, H. P., Ghosh, K., Simsek, M. and Rajbhandary, U. L. (1982) "Nucleotide sequence of wheat germ cytoplasmic initiator methionine transfer ribonucleic acid", Nud. Acids Res., 10, 3241-3247.
7. Harberd, N. P., Flavell, R. B and Thompson, R. D. (1987) "Identification of a transposon-like insertion in a Glu-1 allele of wheat", Mol. Gen. Genet., 209, 326-332.
8. Katsiotis, A., Schmidt, T. and Heslop-Harrison, J. S. (1996). "Chromosomal and genomic organization of Tyl-copia-like retrotransposon sequences in the genus Avena", Genome, 39, 410-417. (Pubitemid 126529674)
9. Lucas, H., Moore, G., Murphy, G. and Flavell, R. B. (1992) "Inverted repeats in the long-terminal repeats of the wheat retrotransposon Wis 2-1 A", Mol. Biol. Evol. 9, 716-728.
10. Manninen, I. and Schulman, A. H. (1993) "BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)", Plant Mol. Biol. 22, 829-846.
11. Moore, G., Lucas, H., Batty, N. and Flavell, R. (1991a) "A family of retrotransposons and associated genomic variation in wheat", Genomics, 10, 461-168.
12. Moore, G., Cheung, W., Schwarzacher, T. and Flavell, R. (1991b) "BIS 1, a major component of the cereal genome and a tool for studying genomic organization", Genomics, 10, 469-176.
13. Moore, G., Abbo, S., Cheung, W., Foote, T., Gale, M., Koebner, R., Leitch, A., Leitch, I., Money, T., Stancombe, P., Yano, M. and Flavell, R. (1993). "Key features of cereal genome organization as revealed by the use of cytosine methylation-sensitive restriction endonucleases." Genomics, 15, 472-482. (Pubitemid 23102041)
14. Monte, J. V., Flavell, R. B. and Gustafson, J. P. (1995) "WIS-2A: an ancient retrotransposon in the Triticeae tribe.", Theor. Appl. Genet, 91, 367-373.
15. Murphy, G. J. P., Lucas, H., Moore, G. and Flavell, R. B. (1992) "Sequence analysis of WIS-2-1A, a retrotransposon-like element from wheat", Plant Mol. Biol, 20, 991-995.
16. Shcherban, A. B. and Vershinin, A. V. (1997). "BARE-ID, a representative of a family of BARE-like elements of the barley genome", Genetica, 100, 231-240. (Pubitemid 28034770)
17. Suoniemi, A., Schmidt, D. and Schulman, A. H. (1997). "BARE-1 insertion site preferences and evolutionary conservation of RNA and cDNA processing sites", Genetica, 100, 219-230. (Pubitemid 28034769)
18. Van Campenhout, S. and Volckaert, G. (1997) "PCR-based isolation and chromosome assignment of members of the Em gene family from wheat", DNA Sequence, 7, 289-300. (Pubitemid 27358139)
19. Van Campenhout, S., Vander Stappen, J., Sági, L. and Volckaert, G. (1995) "Locus-specific primers for LMW glutenin genes on each of the group 1 chromosomes of hexaploid wheat", Theor. Appl. Genet, 91, 313-319.