-
1
-
-
0003415652
-
-
Addison Wesley, Reading, MA
-
Aho, A.V., Hopcroft, J.E. and Ullman, J.D. (1974) The Design and Analysis of Computer Algorithms. Addison Wesley, Reading, MA.
-
(1974)
The Design and Analysis of Computer Algorithms
-
-
Aho, A.V.1
Hopcroft, J.E.2
Ullman, J.D.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0028246722
-
PRINTS - A protein motif fingerprint database
-
Attwood, T.K. and Beck, M.E. (1994) PRINTS - a protein motif fingerprint database. Protein Eng., 7, 841-848.
-
(1994)
Protein Eng.
, vol.7
, pp. 841-848
-
-
Attwood, T.K.1
Beck, M.E.2
-
4
-
-
0029916911
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL
-
Bairoch, A. and Apweiler, R. (1996) The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res., 24, 21-25.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 21-25
-
-
Bairoch, A.1
Apweiler, R.2
-
5
-
-
0029916915
-
The PROSITE database, its status in 1995
-
Bairoch, A., Bucher, P. and Hofmann, K. (1996) The PROSITE database, its status in 1995. Nucleic Adds Res., 24, 189-196.
-
(1996)
Nucleic Adds Res.
, vol.24
, pp. 189-196
-
-
Bairoch, A.1
Bucher, P.2
Hofmann, K.3
-
6
-
-
0028092214
-
Amino acid substituion during functionally constrained divergent evolution of protein sequences
-
Benner, S.A., Cohen, M.A. and Gonnet, G.H. (1994) Amino acid substituion during functionally constrained divergent evolution of protein sequences. Protein Eng., 7, 1323-1332.
-
(1994)
Protein Eng.
, vol.7
, pp. 1323-1332
-
-
Benner, S.A.1
Cohen, M.A.2
Gonnet, G.H.3
-
7
-
-
0026693729
-
Aligning two sequences within a specified diagonal band
-
Chao, K.-M., Pearson, W.R. and Miller, W. (1992) Aligning two sequences within a specified diagonal band. Comput. Applic Biosci., 8, 481-487.
-
(1992)
Comput. Applic Biosci.
, vol.8
, pp. 481-487
-
-
Chao, K.-M.1
Pearson, W.R.2
Miller, W.3
-
8
-
-
0001282761
-
Information enhancement methods for large scale sequence analysis
-
Claverie, J.M. and States, D. (1993) Information enhancement methods for large scale sequence analysis. Comput. Chem., 17, 191-201.
-
(1993)
Comput. Chem.
, vol.17
, pp. 191-201
-
-
Claverie, J.M.1
States, D.2
-
9
-
-
0029967362
-
SRS: An information retrieval system for molecular biological databanks
-
Etzold, T., Ulyanov, A. and Argos, P. (1996) SRS: An information retrieval system for molecular biological databanks. Methods Enzymol., 266, 114-128.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 114-128
-
-
Etzold, T.1
Ulyanov, A.2
Argos, P.3
-
10
-
-
0029868053
-
The PIR-International protein sequence database
-
George, D.G., Barker, W.C., Mewes, H.-W., Pfeiffer, F. and Tsugita, A. (1996) The PIR-International protein sequence database. Nucleic Acids Res., 24, 17-20.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 17-20
-
-
George, D.G.1
Barker, W.C.2
Mewes, H.-W.3
Pfeiffer, F.4
Tsugita, A.5
-
11
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gonnet, G.H., Cohen, M.A. and Benner, S.A. (1992) Exhaustive matching of the entire protein sequence database. Science, 256, 1443-1445.
-
(1992)
Science
, vol.256
, pp. 1443-1445
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
12
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
Gotoh, O. (1982) An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 705-708.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
13
-
-
1842468635
-
Multiple sequence alignment using anchor points through generalized dynamic programming
-
Miyano, S., Akutsu, T., Imai, H., Gotoh, O. and Takagi T. (eds), Universal Academy Press, Tokyo
-
Gracy, J. and Sallantin, J. (1994) Multiple sequence alignment using anchor points through generalized dynamic programming. In Miyano, S., Akutsu, T., Imai, H., Gotoh, O. and Takagi T. (eds), Proceedings of Genome Informatics Workshop 1994. Universal Academy Press, Tokyo, pp. 100-109.
-
(1994)
Proceedings of Genome Informatics Workshop 1994
, pp. 100-109
-
-
Gracy, J.1
Sallantin, J.2
-
14
-
-
0031857779
-
Automated sequence database classification. II. Delineation of domain boundaries from sequence similarities
-
Gracy, J. and Argos, P. (1998) Automated sequence database classification. II. Delineation of domain boundaries from sequence similarities. Bioinformatics, 14, 174-188.
-
(1998)
Bioinformatics
, vol.14
, pp. 174-188
-
-
Gracy, J.1
Argos, P.2
-
15
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov, M., McLachlan, A.D. and Eisenberg, D. (1987) Profile analysis: detection of distantly related proteins. Proc. Natl Acad. Sci. USA, 84, 4355-4358.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A.D.2
Eisenberg, D.3
-
16
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10919.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
17
-
-
0028043552
-
Position-based sequence weights
-
Henikoff, S. and Henikoff, J.G. (1994a) Position-based sequence weights. J. Mol. Biol., 243, 574-578.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 574-578
-
-
Henikoff, S.1
Henikoff, J.G.2
-
18
-
-
0028118434
-
Protein family classification based on searching a database of blocks
-
Henikoff, S. and Henikoff, J.G. (1994b) Protein family classification based on searching a database of blocks. Genomics, 19, 97-107.
-
(1994)
Genomics
, vol.19
, pp. 97-107
-
-
Henikoff, S.1
Henikoff, J.G.2
-
19
-
-
0029115481
-
A sequence property approach to searching protein databases
-
Hobohm, U. and Sander, C. (1995) A sequence property approach to searching protein databases. J. Mol. Biol., 251, 390-399.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 390-399
-
-
Hobohm, U.1
Sander, C.2
-
20
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D.T., Taylor, W.R. and Thornton, J.M. (1992) The rapid generation of mutation data matrices from protein sequences. Comput. Applic. Biosci., 8, 275-282.
-
(1992)
Comput. Applic. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
21
-
-
0027238073
-
The position-end-set tree: A small automaton for word recognition in biological sequences
-
Lefevre, C. and Ikeda, J.-E. (1993) The position-end-set tree: a small automaton for word recognition in biological sequences. Comput. Applic. Biosci., 9, 343-348.
-
(1993)
Comput. Applic. Biosci.
, vol.9
, pp. 343-348
-
-
Lefevre, C.1
Ikeda, J.-E.2
-
22
-
-
0028275084
-
A fast word search algorithm for the representation of sequence similarity in genomic DNA
-
Lefevre, C. and Ikeda, J.-E. (1994) A fast word search algorithm for the representation of sequence similarity in genomic DNA. Nucleic Acids Res., 22, 404-411.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 404-411
-
-
Lefevre, C.1
Ikeda, J.-E.2
-
23
-
-
0025275576
-
Three-way Needleman-Wunsch algorithm
-
Murata, M. (1990) Three-way Needleman-Wunsch algorithm. Methods Enzymol., 183, 365-375.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 365-375
-
-
Murata, M.1
-
25
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S.B. and Wunsch, C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J.. Mol. Biol., 48, 443-453.
-
(1970)
J.. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
26
-
-
0020820579
-
Classification of proteins into groups based on amino acid composition and other characters. I. Angular distribution
-
Nishikawa, K., Kubota, Y. and Ooi, T. (1983) Classification of proteins into groups based on amino acid composition and other characters. I. Angular distribution. J. Biochem., 94, 981-995.
-
(1983)
J. Biochem.
, vol.94
, pp. 981-995
-
-
Nishikawa, K.1
Kubota, Y.2
Ooi, T.3
-
27
-
-
0029006770
-
Comparison of methods for searching protein sequence databases
-
Pearson, W.R. (1995) Comparison of methods for searching protein sequence databases. Protein Sci., 4, 1145-1160.
-
(1995)
Protein Sci.
, vol.4
, pp. 1145-1160
-
-
Pearson, W.R.1
-
28
-
-
0027314207
-
Classification of protein sequences by their dipeptide composition
-
Petrilli, P. (1993) Classification of protein sequences by their dipeptide composition. Comput. Applic. Biosci., 9, 205-209.
-
(1993)
Comput. Applic. Biosci.
, vol.9
, pp. 205-209
-
-
Petrilli, P.1
-
29
-
-
0003474751
-
-
Cambridge University Press, Cambridge, UK
-
Press, W.H., Flannery, B.P., Teukosky, S.A. and Vettering, W.T. (1988) Numerical Recipes in C. The Art of Scientific Computing. Cambridge University Press, Cambridge, UK, pp. 540-547.
-
(1988)
Numerical Recipes in C. The Art of Scientific Computing
, pp. 540-547
-
-
Press, W.H.1
Flannery, B.P.2
Teukosky, S.A.3
Vettering, W.T.4
-
30
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related sequences
-
Smith, R.F. and Smith, T.F. (1990) Automatic generation of primary sequence patterns from sets of related sequences. Proc. Natl Acad Sci USA, 87, 118-122.
-
(1990)
Proc. Natl Acad Sci USA
, vol.87
, pp. 118-122
-
-
Smith, R.F.1
Smith, T.F.2
-
32
-
-
0028218683
-
Modular arrangement of proteins as inferred from analysis of homology
-
Sonnhammer, E.L.L. and Kahn, D. (1994) Modular arrangement of proteins as inferred from analysis of homology. Protein Sci., 3, 482-492.
-
(1994)
Protein Sci.
, vol.3
, pp. 482-492
-
-
Sonnhammer, E.L.L.1
Kahn, D.2
-
33
-
-
0027903056
-
Computationally efficient cluster representation in molecular sequence megaclassification
-
National Library of Medicine, Bethesda, MD
-
States, D.J., Harris, N.L. and Hunter, L. (1993) Computationally efficient cluster representation in molecular sequence megaclassification. In Proceedings of the First International Conference for Molecular Biology. National Library of Medicine, Bethesda, MD, pp. 387-394.
-
(1993)
Proceedings of the First International Conference for Molecular Biology
, pp. 387-394
-
-
States, D.J.1
Harris, N.L.2
Hunter, L.3
-
34
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0029046744
-
An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited
-
Vogt, G., Etzold, T. and Argos, P. (1995) An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited. J. Mot. Biol., 249, 816-831.
-
(1995)
J. Mot. Biol.
, vol.249
, pp. 816-831
-
-
Vogt, G.1
Etzold, T.2
Argos, P.3
|