Circular substrates of the hammerhead ribozyme shift the internal equilibrium further toward cleavage

Biochemistry

Volumn 37, Issue 26, 1998, Pages 9386-9393

  Stage Zimmermann, Tracy K ^a,b   Uhlenbeck, Olke C ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b DANA FARBER CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MAGNESIUM; RIBOZYME;

ARTICLE; ENTHALPY; ENTROPY; ENZYME BINDING; ENZYME CONFORMATION; ENZYME STRUCTURE; ENZYME SUBSTRATE; NONHUMAN; PRIORITY JOURNAL; TEMPERATURE SENSITIVITY; THERMODYNAMICS;

BASE SEQUENCE; DNA, CIRCULAR; HYDROLYSIS; KINETICS; MAGNESIUM CHLORIDE; MOLECULAR SEQUENCE DATA; RNA, CATALYTIC; SUBSTRATE SPECIFICITY; THERMODYNAMICS;

SPHYRNA;

EID: 0032580975     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980307z     Document Type: Article

References (32)

1. Pley, H. W., Flaherty, K. M., and McKay, D. B. (1994) Nature 372, 68-74.
2. Scott, W. G., Finch, J. T., and Klug, A. (1995) Cell 81, 991-1002.
3. Amiri, K. M. A., and Hagerman, P. J. (1994) Biochemistry 33, 13172-13177.
4. Tuschl, T., Gohlke, C., Jovin, T. M., Westhof, E., and Eckstein. F. (1994) Science 266, 785-789.
5. Bassi, G. S., Møllegaard, N.-E., Murchie, A. I. H., von Kitzing, E., and Lilley, D. M. J. (1995) Nat. Struct. Biol. 2, 45-55.
6. van Tol, H., Buzayan, J. M., Feldstein, P. A., Eckstein, F., and Bruening, G. (1990) Nucleic Acids Res. 18, 1971-1975.
7. Koizumi, M., and Ohtsuka, E. (1991) Biochemistry 30, 5145-5150.
8. Slim, G., and Gait, M. J. (1991) Nucleic Acids Res. 19, 1183-1188.
9. McKay, D. B. (1996) RNA 2, 395-403.
10. Peracchi, A., Beigelman, L., Scott, E. C., Uhlenbeck, O. C., and Herschlag, D. (1997) J. Biol. Chem. 272, 26822-26826.
11. Hertel, K. J., Herschlag, D., and Uhlenbeck, O. C. (1994) Biochemistry 33, 3374-3385.
12. Hertel, K. J., and Uhlenbeck, O. C. (1995) Biochemistry 34, 1744-1749.
13. Amiri, K. M. A., and Hagerman, P. J. (1996) J. Mol. Biol. 261, 125-134.
14. Scott, W. G., Murray, J. B., Arnold, J. R. P., Stoddard, B. L., and Klug, A. (1996) Science 274, 2065-2069.
15. Simorre, J.-P., Legault, P., Hangar, A. B., Michiels, P., and Pardi, A. (1997) Biochemistry 36, 518-525.
16. Milligan, J. F., and Uhlenbeck, O. C. (1989) Methods Enzymol. 180, 51-62.
17. Fedor, M. J., and Uhlenbeck, O. C. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1668-1672.
18. Wincott, F., DiRenzo, A., Shaffer, C., Grimm, S., Tracz, D., Workman, C., Sweedler, D., Gonzalez, C., Scaringe, S., and Usman, N. (1995) Nucleic Acids Res. 23, 2677-2684.
19. Cameron, V., Soltis, D., and Uhlenbeck, O. C. (1978) Nucleic Acids Res. 5, 825-833.
20. Long, D. M., LaRiviere, F. J., and Uhlenbeck, O. C. (1995) Biochemistry 34, 14435-14440.
21. Clouet-d'Orval, B., and Uhlenbeck, O. C. (1996) RNA 2, 483-491.
22. Saenger, W. (1984) Principles of Nucleic Acid Structure, Springer-Verlag, New York.
23. Freier, S. M., Kierzek, R., Jaeger, J. A., Sugimoto, N., Caruthers, M. H., Neilson, T., and Turner, D. H. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 9373-9377.
24. Serra, M. J., and Turner, D. H. (1995) Methods Enzymol. 259, 242-261.
25. Fedor, M. J., and Uhlenbeck, O. C. (1992) Biochemistry 31, 12042-12054.
26. Gumport, R. I., and Uhlenbeck, O. C. (1981) in Gene Amplification and Analysis 2 (Chirikjian, J. G., and Papas, T. S., Eds.) p 314, Elsevier North-Holland, Inc., New York.
27. Dahm, S. C., Derrick, W. B., and Uhlenbeck, O. C. (1993) Biochemistry 32, 13040-13045.
28. Uhlenbeck, O. C. (1987) Nature 328, 596-600.
29. Sigurdsson, S. T., Tuschl, T., and Eckstein, F. (1995) RNA 1, 575-583.
30. Bassi, G. S., Murchie, A. I. H., and Lilley, D. M. (1996) RNA 2, 756-768.
31. Miller, W. A., and Silver, S. L. (1991) Nucleic Acids Res. 19, 5313-5320.
32. Miller, W. A., Hercus, T., Waterhouse, P. M., and Gerlach, W. L. (1991) Virology 183, 711-720.