Different DNA contact schemes are used by two winged helix proteins to recognize a DNA binding sequence

Nucleic Acids Research

Volumn 25, Issue 14, 1997, Pages 2888-2896

  Bravieri, Robert ^a   Shiyanova, Tatiyana ^a   Chen, Tsu Hua ^a   Overdier, Dave ^a   Liao, Xiubei ^a  

^a UNIVERSITY OF ILLINOIS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; NUCLEAR FACTOR; TRANSCRIPTION FACTOR;

ARTICLE; BASE MISPAIRING; BINDING AFFINITY; DNA BINDING; LIVER CELL; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

BINDING SITES; DNA; DNA-BINDING PROTEINS; FORKHEAD TRANSCRIPTION FACTORS; HELIX-TURN-HELIX MOTIFS; HEPATOCYTE NUCLEAR FACTOR 3-ALPHA; MODELS, MOLECULAR; MOLECULAR STRUCTURE; NUCLEAR PROTEINS; REPRESSOR PROTEINS; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EID: 0030793061     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.14.2888     Document Type: Article

References (42)

1. Jonson, P.F. and McKnight, S.L. (1989) Annu. Rev. Biochem. 58, 799-839.
2. Levine, M. and Hoey, T. (1989) Cell 59, 405-408.
3. Mitchell, P.J. and Tjian, R. (1989) Science 245, 371-378.
4. Pabo, C.O. and Sauer, R.T. (1992) Annu. Rev. Biochem. 61, 1053-1095.
5. Harrison, S.C. and Aggarwal, A.K. (1990) Annu. Rev. Biochem. 59, 933-969.
6. Miller, J., McLachian, A.D. and Klug, A. (1985) EMBO J. 4, 1609-1614.
7. Gehring, W.J. and Hiromi, Y. (1986) Annu. Rev. Genet. 20, 147-173.
8. Kornberg, T.B. (1993) J. Biol. Chem. 268, 26813-26816.
9. Landschulz, W.H., Johnson, P.F. and McKnight, S.L. (1988) Science 240, 1759-1764.
10. Murre, C., McCaw, P.S. and Baltimore, D. (1989) Cell 56, 777-7.
11. Clark, K.L., Malay, E.D., Lai, E. and Burley, S.K. (1993) Nature 364, 412-420.
12. Lai, E., Prezioso, V.R., Smith, E., Litvin. O., Costa, R.H. and Darnell, J.E., Jr (1990) Genes Dev. 4, 1427-1436.
13. Weigal, D. and Jackle, H. (1990) Cell 63, 455-456.
14. Grossniklaus, U., Pearson, R.K. and Gehring, W.J. (1992) Genes Dev. 6, 1030-1051.
15. Zhu, G., Muller, E.G.D., Amacher, S.L., Northrop, J.L. and Davis, T.N. (1993) Mol. Cell. Biol. 13, 1779-1787.
16. Li, C., Lai, C., Sigman, D.S. and Graynor, R.B. (1991) Proc. Natl. Acad. Sci. USA 88, 7739-7743.
17. Tao, W. and Lai, E. (1992) Neuron 8, 957-966.
18. Clevidence, D.E., Overdier, D.G., Tao, W., Qian, X, Pani, L., Lai, E. and Costa, R.H. (1993) Proc. Natl. Acad. Sci. USA 90, 3948-3952.
19. Avraham, K.B., Fletcher, C., Overdier, D.G., Clevidence, D.E., Lai, E., Costa, R.H., Jenkins, N.A. and Copeland, N.G. (1995) Genomics 25, 388-393.
20. Bassel-Duby, R., Hernandez, M.D., Yang, Q., Rochelle, J.M., Sledin, M.F. and Williams, R.S. (1994) Mol. Cell. Biol. 14, 4596-4605.
21. Dirkson, M.L. and Jamrich, M. (1992) Genes Dev. 6, 599-608.
22. Miller, L.M., Gallegos, M.E., Morisseau, B.A. and Kim, S.K. (1993) Genes Dev. 7, 933-947.
23. Pierrou, S., Hellqvist, M., Samuelsson, L., Enerback, S. and Carlsson, P. (1994) EMBO J. 13, 5002-5012.
24. Sutton, J., Costa, R., Klug, M., Field, L., Xu, D., Largaespada, D.A., Fletcher, C.F., Jenkins, N.A., Copeland, N.G., Klemsz, M. and Hromas, R. (1996) J. Biol. Chem. 271, 23126-23133.
25. Costa, R.H., Grayson, D.R. and Darnell, J.E., Jr (1989) Mol. Cell. Biol. 9, 1415-1425.
26. Costa, R.H. and Grayson, D.R. (1991) Nucleic Acids Res. 19, 4139-4145.
27. Liu, E., DiPersio, C.M. and Zaret, K.S. (1991) Mol. Cell. Biol. 11, 773-784.
28. Hacher, U., Grossniklaus, U., Gehring, W.J. and Jackle, H. (1992) Proc. Natl. Acad. Sci. USA 89, 8754-8758.
29. Ang, S.L. and Rossant, J. (1994) Cell 78, 561-574.
30. Weinstein, D.C., Ruiz i Altaba, A., Chen, W.S., Hoodless, P., Prezioso, V.R., Jessell, R.M. and Damell, J.E., Jr (1994) Cell 78, 575-588.
31. Overdier, D.G., Porcella, A. and Costa, R.H. (1994) Mol. Cell. Biol. 14, 2755-2766.
32. Gohlke, C., Murchle, A.I., Lilley, D.M. and Clegg, R.M. (1994) Proc. Natl. Acad. Sci. USA 91, 11660-11664.
33. Wang Y.-H., Baker, P. and Griffith, J. (1992) J. Biol. Chem. 267, 4911-4920.
34. Tabor, S. and Richardson, C.C. (1987) Proc. Natl. Acad. Sci. USA 84, 4767-4771.
35. Studier, F.W. and Moffat, B.A. (1986) J. Mol. Biol. 189, 113-130.
36. Gamer, M. and Revzin, A. (1981) Nucleic Acids Res. 9, 6505-6525.
37. Clevidence, D., Overdier, D.G., Peterson, R.S., Porcella, A., Ye, H., Paulson, K.E. and Costa, R. (1994) Dev. Biol. 166, 195-209.
38. Werner, M., Clore, G.M., Fisher, C.L., Fisherm, R.J., Trinh, L. and Gronenborn (1995) Cell 83, 761 -771.
39. Kim., J.L., Nikolov, D.B. and Burley, S.K. (1993) Nature 365, 520-527.
40. Love., J.J., Li, X., Case, D.A., Klaus, G., Grosschedl, R. and Wright, P.E. (1995) Nature 376, 791-795.
41. Schumacher, M.A., Choi, K.Y., Zalkin, H. and Brennan, R.G. (1994) Science 266, 763-770.
42. Kaufmann, E., Muller, D. and Knochel, W. (1995) J. Mol. Biol. 248, 239-254.