Characterization of the flanking regions of the S-RNase genes of Japanese pear (Pyrus serotina) and apple (Malus x domestica)

Gene

Volumn 211, Issue 1, 1998, Pages 159-167

  Ushijima, Koichiro ^a   Sassa, Hidenori ^a   Hirano, Hisashi ^a  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

Genomic sequence; Promoter; Repetitive sequence; Ribonuclease; Rosaceae; Self incompatibility

Indexed keywords

RIBONUCLEASE;

ARTICLE; DNA FLANKING REGION; FRUIT; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; TATA BOX;

AMINO ACID SEQUENCE; BASE SEQUENCE; BLOTTING, SOUTHERN; CLONING, MOLECULAR; FRUIT; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PROMOTER REGIONS (GENETICS); REPETITIVE SEQUENCES, NUCLEIC ACID; RIBONUCLEASES; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TATA BOX; TRANSCRIPTION, GENETIC;

EMBRYOPHYTA; MALUS X DOMESTICA; PYRUS COMMUNIS; PYRUS PYRIFOLIA; ROSACEAE;

EID: 0032574647     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00105-X     Document Type: Article

References (41)

1. Broothaerts W., Janssens G.A., Proost P., Broekaert W.F. cDNA cloning and molecular analysis of two self-incompatibility alleles from apple. Plant Mol. Biol. 27:1995;499-511.
2. Chung I.K., Lee S.Y., Ito T., Tanaka H., Nam H.G., Takagi M. The 5′ flanking sequences of two S alleles in Lycopersicon peruvianum are highly heterogous but contain short blocks of homologous sequences. Plant Cell Physiol. 36:1995;1621-1627.
3. Coleman C.E., Kao T.-H. The flanking regions of two Petunia inflata S alleles are heterogeneous and repetitive sequences. Plant Mol. Biol. 18:1992;499-511.
4. Dellaporta S.L., Wood J., Hicks J.B. A plant DNA minipreparation: version II. Plant Mol. Bio. Rep. 1:1983;19-21.
5. Elliot R.C., Dickey L.F., White M.J., Thompson W.F. cis-acting elements for light regulate of pea ferredoxin I gene expression are located within transcribed sequences. Plant Cell. 1:1989;691-698.
6. Flavell R. The molecular characterization and organization of plant chromosomal DNA sequences. Annu. Rev. Plant Physiol. 31:1980;569-596.
7. Frohman, M.A., 1995. Rapid amplification of cDNA ends. In: Dieffenbach, C.W., Dveksler, G.S. (Eds.), PCR Primer: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 381-409.
8. Golz J.F., Clarke A.E., Newbigin E. Self-incompatibility in flowering plants. Curr. Opin. Genet. Dev. 5:1995;640-645.
9. Huang S., Lee H.-S., Karunanandaa B., Kao T.-H. Ribonuclease activity of Petunia inflata S proteins is essential for rejection of self-pollen. Plant Cell. 6:1994;1021-1028.
10. Ioerger T.R., Clarke A.G., Kao T.-H. Polymorphism at the self-incompatibility locus in Solanaceae predates speciation. Proc. Natl. Acad. Sci. USA. 87:1990;9732-9735.
11. Ioerger T.R., Gohlke J.R., Xu B., Kao T.-H. Primary structural features of the self-incompatibility protein in Solanaceae. Sex. Plant Reprod. 4:1991;81-87.
12. Janssens G.A., Goderis I.J., Broekaert W.F., Broothaerts W. A molecular method for S-allele identification in apple based on allele-specific PCR. Theor. Appl. Genet. 91:1995;691-698.
13. Kao T.-H., McCubbin A.G. How flowering plants discriminate between self and non-self pollen to prevent inbreeding. Proc. Natl. Acad. Sci. USA. 93:1996;12059-12065.
14. Kaufmann H., Salamini F., Thompson R.D. Sequence variability and gene structure at the self-incompatibility locus of Solanum tuberosum. Mol. Gen. Genet. 226:1991;457-466.
15. Lee H.-S., Huang S., Kao T.-H. S proteins control rejection of incompatible pollen in Petunia inflata. Nature. 367:1994;560-563.
16. Maas C., Laufs J., Grant S., Korfhage C., Werr W. The combination of a novel stimulatory element in the first exon of the maize Shrunken-1 gene with the following intron 1 enhanced reporter gene expression up to 1000-fold. Plant Mol. Biol. 16:1991;199-207.
17. McClure B.A., Gray J.E., Anderson M.A., Clarke A.E. Self-incompatibility in Nicotiana alata involves degradation of pollen rRNA. Nature. 347:1990;757-760.
18. Maruyama K., Sugano S. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene. 138:1994;171-174.
19. Matton D.P., Nass N., Clarke A.E., Newbigin E. Self-incompatibility: How plants avoid illegitimate offspring. Proc. Natl. Acad. Sci. USA. 91:1994;1992-1997.
20. Matton D.P., Mau S.L., Okamoto S., Clarke A.E., Newbigin E. The S-locus of Nicotiana alata: genomic organization and sequence analysis of two S-RNase alleles. Plant Mol. Biol. 28:1995;847-858.
21. Morgan D.R., Soltis D.E., Robertson K.R. Systematic and evolutionary implications of rbcL sequence variation in Rosaceae. Am. J. Bot. 81:1994;890-903.
22. 2-ribonuclease) from Nicotiana alata in transgenic Nicotiana tabacum. Plant Cell. 4:1992;1063-1074.
23. Murfett J., Atherton T.L., Mou B., Gasser C.S., McClure B.A. S-RNase expressed in transgenic Nicotiana causes S-allele-specific pollen rejection. Nature. 367:1994;563-566.
24. Murfett J., Ebert P.R., Haring V., Clarke A.E. An S-RNase promoter from Nicotiana alata functions in transgenic N. alata plants but not Nicotiana tabacum. Plant Mol. Biol. 28:1995;957-963.
25. Newbigin E., Anderson M.A., Clarke A.E. Gametophytic self-incompatibility systems. Plant Cell. 5:1993;1315-1324.
26. Norioka N., Norioka S., Ohnishi Y., Ishimizu T., Oneyama C., Nakanishi T., Sakiyama F. Molecular cloning and nucleotide sequences of cDNAs encoding S-allele specific stylar RNases in a self-incompatible cultivar and its self-compatible mutant of Japanese pear, Pyrus pyrifolia. Nakai. J. Biochem. 120:1996;335-345.
27. Ochman H., Gerber A.S., Hartl D.L. Genetic applications of an inverse polymerase chain reaction. Gene. 120:1988;621-623.
28. Richman A.D., Kohn J.R. Learning from rejection: the evolutionary biology of single-locus incompatibility. Trends Ecol. Evol. 11:1996;497-502.
29. Richman A.D., Uyenoyama M.K., Kohn J.R. Allelic diversity and gene genealogy at the self-incompatibility locus in the Solanaceae. Science. 273:1996;1212-1216.
30. Royo J., Kuntz C., Kowyama Y., Anderson M., Clarke A.E. Loss of a histidine residue at the active site of S-locus ribonuclease is associated with self-compatibility in Lycopersicon peruvianum. Proc. Natl. Acad. Sci. USA. 91:1994;6511-6514.
31. Sassa H., Hirano H., Ikehashi H. Self-incompatibility-related RNases in styles of Japanese pear (Pyrus serotina Rehd.). Plant Cell Physiol. 33:1992;811-814.
32. Sassa H., Hirano H., Ikehashi H. Identification and characterization of stylar glycoproteins associated with self-incompatibility genes of Japanese pear, Pyrus serotina Rehd. Mol. Gen. Genet. 241:1993;17-25.
33. Sassa H., Mase N., Hirano H., Ikehashi H. Identification of self-incompatibility-related glycoproteins in styles of apple (Malus×domestica). Theor. Appl. Genet. 89:1994;201-205.
34. Sassa H., Nishio T., Kowyama Y., Hirano H., Koba T., Ikehashi H. Self-incompatibility (S) alleles of the Rosaceae encode members of a distinct class of the T2/S-ribonuclease superfamily. Mol. Gen. Genet. 250:1996;547-557.
35. Sassa H., Hirano H., Nishino T., Koba T. Style-specific self-compatible mutation caused by deletion of the S-RNase gene in Japanese pear (Pyrus serotina). Plant J. 12:1997;223-227.
36. Sieburth L.E., Meyerowitz E.M. Molecular dissection of the AGAMOUS control region shows that cis elements for spatial regulation are located intragenically. Plant Cell. 9:1997;355-365.
37. Simpson G.G., Filipowicz W. Splicing of precursors to mRNA in higher plants: mechanism, regulation and sub-nuclear organization of the spliceosomal machinery. Plant Mol. Biol. 32:1996;1-41.
38. Tao R., Yamane H., Sassa H., Mori H., Gradziel T., Dandekar A.M., Sugiura A. Identification of stylar RNases associated with gametophytic self-incompatibility in almond (Prunus dulcis). Plant Cell Physiol. 38:1997;304-311.
39. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. 1994. Nucleic Acids Res. 22:1994;4673-4680.
40. Xue Y., Carpenter R., Dickinson H., Coen E.S. Origin of allelic diversity in Antirrhinum S locus RNases. Plant Cell. 8:1996;805-814.
41. Yamane, H., Tao, R., Murayama, H., Sassa, H., Sugiura, A., 1998. Cloning of cDNAs encoding RNases linked to S-alleles of sweet cherry (Prunus avium L.) J. Jpn. Soc. Hort. Sci. 67, Suppl. 1, in press.