Inferences about the catalytic domain of P-type ATPases from the tertiary structures of enzymes that catalyze the same elementary reaction

FEBS Letters

Volumn 431, Issue 3, 1998, Pages 309-314

  Smirnova, Irina N ^a   Kasho, Vladimir N ^a   Faller, Larry D ^a  

^a NONE

Author keywords

AAA family; ABC transporter; Active transport; Enzyme structure; P type pump; Phosphate transfer

Indexed keywords

ADENOSINE TRIPHOSPHATASE;

ACTIVE TRANSPORT; AMINO ACID SEQUENCE; BINDING SITE; ENZYME ANALYSIS; ENZYME STRUCTURE; PHOSPHATE TRANSPORT; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; REVIEW;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CATALYSIS; HUMANS; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY;

EID: 0032563329     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(98)00760-1     Document Type: Review

References (43)

1. Babbitt, P.C. and Gerlt, J.A. (1997) J. Biol. Chem. 272, 30591-30594.
2. Post, R.L. and Kume, S. (1973) J. Biol. Chem. 248, 6993-7000.
3. Walker, J.E., Saraste, M., Runswick, M.J. and Gay, N.J. (1982) EMBO J. 1, 945-951.
4. Skou, J.C. (1957) Biochim. Biophys. Acta 23, 394-401.
5. Serrano, R. (1989) Annu. Rev. Plant Physiol. Plant Mol. Biol. 40, 61-94.
6. Farley, R.A., Heart, E., Kabalin, M., Putnam, D., Wang, K., Kasho, V.N. and Faller, L.D. (1997) Biochemistry 36, 941-951.
7. Taylor, W.R. and Green, N.M. (1989) Eur. J. Biochem. 179, 241-248.
8. Abele, U. and Schultz, G.E. (1995) Protein Sci. 4, 1262-1271.
9. Clarke, D.M., Loo, T.W. and MacLennan, D.H. (1990) J. Biol. Chem. 265, 22223-22227.
10. Gerstein, M., Schulz, G. and Chothia, C. (1993) J. Mol. Biol. 229, 494-501.
11. Kasho, V.N., Stengelin, M., Smirnova, I.N. and Faller, L.D. (1997) Biochemistry 36, 8045-8052.
12. Altshul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Nucleic Acids Res. 25, 3389-3402.
13. Rost, B. and Sander, C. (1993) J. Mol. Biol. 232, 584-599.
14. Rost, R. and Sander, C. (1994) Proteins 19, 55-72.
15. Sander, C. and Schneider, R. (1991) Proteins 9, 56-68.
16. Traut, T.W. (1994) Eur. J. Biochem. 222, 9-19.
17. Saraste, M., Sibbald, P.R. and Wittinghofer, A. (1990) Trends Biochem. Sci. 15, 430-434.
18. Müller, C.W. and Schulz, G.E. (1992) J. Mol. Biol. 224, 159-177.
19. Knowles, J.R. (1980) Annu. Rev. Biochem. 49, 877-919.
20. Dreusicke, D., Karplus, P.A. and Schulz, G.E. (1988) J. Mol. Biol. 199, 359-371.
21. Poland, B.W., Fromm, H.J. and Honzatko, R.B. (1996) J. Mol. Biol. 264, 1013-1027.
22. Alexeev, D., Baxter, R.L. and Sawyer, L. (1994) Structure 2, 1061-1072.
23. Kang, C., Sun, N., Poland, B.W., Gorrell, A., Honzatko, R.B. and Fromm, H.J. (1997) J. Biol. Chem. 272, 11881-11885.
24. Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) J. Mol. Biol. 247, 536-540.
25. Matte, A., Tari, L.W., Goldie, H. and Delbaere, L.T.J. (1997) J. Biol. Chem. 272, 8105-8108.
26. Aravind, L., Galperin, M.Y. and Koonin, E.V. (1998) Trends Biochem. Sci. 23, 127-129.
27. Boyer, P.D. (1993) Biochim. Biophys. Acta 1140, 215-250.
28. Abrahams, J.P., Leslie, A.G.W., Lutter, R. and Walker, J.E. (1994) Nature 370, 621-628.
29. Dreusicke, D. and Schulz, G.E. (1986) FEBS Lett. 208, 301-304.
30. Ruff, P., Speicher, D.W. and Husain-Chishit, A. (1991) Proc. Natl. Acad. Sci. USA 88, 6595-6599.
31. Kim, E., Cho, K.-O., Rothschild, A. and Sheng, M. (1996) Neuron 17, 103-113.
32. Stehle, T. and Schulz, G.E. (1992) J. Mol. Biol. 224, 1127-1141.
33. Woods, D.F. and Bryant, P.J. (1993) Mechanisms Dev. 44, 85-89.
34. Tusukamoto, T., Miura, S., Nakai, T., Yokota, S., Shimozawa, N. and Osumi, T. Nature Genet. 11, 395-401.
35. Erdmann, R., Wiebel, F.F., Flessau, A., Rytka, J., Beyer, A., Frohlich, K.U. and Kunau, W.H. (1991) Cell 64, 499-510.
36. Higgins, C.F., Haag, P.D., Nikaido, K., Ardeshir, F., Garcia, G. and Ames, G.F. (1982) Nature 298, 723-727.
37. Shyamala, V., Baichwal, V., Beall, E. and Ames, G.F.-L. (1991) J. Biol. Chem. 266, 18714-18719.
38. Bell, A.W., Buckel, S.D., Groarke, J.M., Hope, J.N., Kingsley, D.H. and Hermodson, M.A. (1986) J. Biol. Chem. 261, 7652-7658.
39. Armstrong, S.R., Tabernero, L., Zhang, H., Hermodson, M. and Stauffacher, C. (1998) Biophys. J. 74, A338.
40. Confalonieri, F. and Duguet, M. (1995) BioEssays 17, 639-650.
41. Tusnády, G.E., Bakos, E., Váraki, A. and Sarkadi, B. (1997) FEBS Lett. 402, 1-3.
42. Pai, E.F., Krengel, U., Petsko, G.A., Goody, R.S., Kabsch, W. and Wittinghofer, A. (1990) EMBO J. 9, 2351-2359.
43. Huang, W., Jia, J., Gibson, K.J., Taylor, W.S., Rendina, A.R., Schneider, G. and Lindqvist, Y. (1995) Biochemistry 34, 10985-10995.