Functional modules important for activated expression of early genes of herpes simplex virus type 1 are clustered upstream of the TATA box

Virology

Volumn 246, Issue 1, 1998, Pages 145-157

  Pande, Nupur T ^a   Petroski, Matthew D ^a   Wagner, Edward K ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; CIS ACTING ELEMENT; DEOXYURIDINE TRIPHOSPHATE PYROPHOSPHATASE; MESSENGER RNA; PROTEIN C; THYMIDINE KINASE;

ANIMAL CELL; ARTICLE; BINDING SITE; CONTROLLED STUDY; GENE EXPRESSION; HERPES SIMPLEX VIRUS 1; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REPORTER GENE; SKIN FIBROBLAST; TATA BOX; VERO CELL; VIRUS GENE; VIRUS RECOMBINANT;

ANIMALIA; DNA VIRUSES; HERPES; HUMAN HERPESVIRUS 1;

EID: 0032551185     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1998.9189     Document Type: Article

References (44)

1. Bludau, H., and Freese, U. K. (1991). Analysis of the HSV-1 strain 17 DNA polymerase gene reveals the expression of four different classes of pol transcripts. Virology 183, 505-518.
2. Boni, J., and Coen, D. M. (1989). Examination of the roles of transcription factor Sp1-binding sites and an octamer motif in trans induction of the herpes simplex virus thymidine kinase gene. J. Virol. 63, 4088-4092.
3. Bucher, P. (1990). Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J. Mol. Biol. 212, 563-578.
4. Carcamo, J., Lobos, S., Merino, A., Buckbinder, L., Weinmann, R., Natarajan, V., and Reinberg, D. (1989). Factors involved in specific transcription by mammalian RNA polymerase II: Role of factors IID and MLTF in transcription from the adenovirus major late and IVa2 promoters. J. Biol. Chem. 264, 7704-7714.
5. Coen, D. M., Weinheimer, S. P., and McKnight, S. L. (1986). A genetic approach to promoter recognition during trans induction of viral gene expression. Science 234, 53-59.
6. Cook, W. J., Gu, B., DeLuca, N. A., Moynihan, E. B., and Coen, D. M. (1995a). Induction of transcription by a viral regulatory protein depends on the relative strengths of functional TATA boxes. Mol. Cell. Biol. 15, 4998-5006.
7. Cook, W. J., Lin, S. M., DeLuca, N. A., and Coen, D. M. (1995b). Initiator elements and regulated expression of the herpes simplex virus thymidine kinase gene. J. Virol. 69, 7291-7294.
8. Corden, J., Wasylyk, B., Buchwalder, A., Sassone-Corsi, P., Kedinger, C., and Chambon, P. (1980). Promoter sequences of eukaryotic protein-coding genes. Science 209, 1406-1414.
9. Das, G., Hinkley, C. S., and Herr, W. (1995). Basal promoter elements as a selective determinant of transcriptional activator function. Nature 374, 657-660.
10. Faber, S. W., and Wilcox, K. W. (1986). Association of the herpes simplex virus regulatory protein ICP4 with specific nucleotide sequences in DNA. Nucleic Acids Res. 14, 6067-6083.
11. L38, a true late gene involved in capsid assembly. J. Virol. 65, 769-786.
12. Gerster, T., and Roeder, R. G. (1988). A herpesvirus trans-activating protein interacts with transcription factor OTF-1 and other cellular proteins. Proc. Natl. Acad. Sci. USA 85, 6347-6351.
13. Gilman, M. (1989). "Current Protocols in Molecular Biology" (F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl, Eds.), pp. 4.7.1-4.7.8. Wiley-Interscience, New York.
14. L38 promoter. J. Virol. 66, 2973-2981.
15. L38 promoter conferred by the cis-acting downstream activation sequence is mediated by a cellular transcription factor. J. Virol. 68, 7774-7789.
16. Guzowski, J. F., and Wagner, E. K. (1993). Mutational analysis of the herpes simplex virus type 1 strict late UL38 promoter/leader reveals two regions critical in transcriptional regulation. J. Virol. 67, 5098-5108.
17. Hashimoto-Gotoh, T. (1995). Quantitative determination of effective nibbling activities contaminating restriction endonuclease preparations. Anal. Biochem. 231, 230-236.
18. Imbalzano, A. N., Coen, D. M., and DeLuca, N. A. (1991). Herpes simplex virus transactivator ICP4 operationally substitutes for the cellular transcription factor Sp1 for efficient expression of the viral thymidine kinase gene. J. Virol. 65, 565-574.
19. Imbalzano, A. N., and DeLuca, N. A. (1992). Substitution of a TATA box from a herpes simplex virus late gene in the viral thymidine kinase promoter alters ICP4 inducibility but not temporal expression. J. Virol. 66, 5453-5463.
20. Kibler, P. K., Duncan, J., Keith, B. D., Hupel, T., and Smiley, J. R. (1991). Regulation of herpes simplex virus true late gene expression. Sequences downstream from the US11 TATA box inhibit expression from an unreplicated template. J. Virol. 65, 6749-6760.
21. McKnight, S. L. (1982). Functional relationships between transcriptional control signals of the thymidine kinase gene of herpes simplex virus. Cell 31, 355-365.
22. McKnight, S. L., Gavis, E. R., Kingsbury, R., and Axel, R. (1981). Analysis of transcriptional regulatory signals of the HSV thymidine kinase gene: Identification of an upstream control region. Cell 25, 385-398.
23. McKnight, S. L., and Kingsbury, R. (1982). Transcriptional control signals of a eukaryotic protein-coding gene. Science 217, 316-324.
24. Mitchell, R. J., and Tjian, R. (1989). Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. Science 245, 371-378.
25. O'Hare, P., and Hayward, G. S. (1986). Multiple transacting proteins of herpes simplex virus that have different target specificities and exhibit both positive and negative regulatory functions. Cancer Cells 4, 175.
26. Pande, N. T (1997). "Functional Analysis of Two Early Gene Promoters of Herpes Simplex Virus Type I." Ph.D. dissertation, University of California, Irvine.
27. Papavassiliou, A. G., and Silverstein, S. J. (1990). Interaction of cell and virus proteins with DNA sequences encompassing the promoter/ regulatory and leader regions of the herpes simplex virus thymidine kinase gene. J. Biol. Chem. 265, 9402-9412.
28. Paterson, T., and Everett, R. D. (1988). The regions of the herpes simplex virus type 1 immediate early protein Vmw175 required for site specific DNA binding closely correspond to those involved in transcriptional regulation. Nucleic Acids Res. 16, 11005-11025.
29. Poncz, M., Solowiejczyk, D., Ballantine, M., Schwartz, E., and Surrey, S. (1982). "Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method. Proc. Natl. Acad. Sci. USA 79, 4298-4302.
30. Ramsey-Ewing, A., van Wijnen, A. J., Stein, G. S., and Stein, J. L. (1994). Delineation of a human histone H4 cell cycle element in vivo: The master switch for H4 gene transcription. Proc. Natl. Acad. Sci. USA 91, 4475-4479.
31. Schaffer, P. A., Wagner, E. K., Devi-Rao, G. B., and Preston, V. G. (1987). "Genetic Maps 1987" (S. O'Brien, Ed.), 4th ed., pp. 93-98. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
32. Singh, J., and Wagner, E. K. (1995). Herpes simplex virus recombination vectors designed to allow insertion of modified promoters into transcriptionally "neutral" segments of the viral genome. Virus Genes 10, 127-136.
33. Smale, S. T., and Baltimore, D. (1989). The "initiator" as a transcriptional control element. Cell 57, 103-113.
34. Smith, C. A., Bates, P., Rivera-Gonzalez, R., Gu, B., and DeLuca, N. A. (1993). ICP4, the major transcriptional regulatory protein of herpes simplex virus type 1, forms a tripartite complex with TATA-binding protein and TFIIB. J. Virol. 67, 4676-4687.
35. Stein, G. S., Stein, J. L., van Wijnen, A. J., and Lian, J. B. (1994). Histone gene transcription: a model for responsiveness to an integrated series of regulatory signals mediating cell cycle control and proliferation/differentiation interrelationships. J. Cell Biochem. 54, 393-404.
36. Su, L., and Knipe, D. M. (1989). Herpes simplex virus alpha protein ICP27 can inhibit or augment viral gene transactivation. Virology 170, 496-504.
37. Triezenberg, S. J., Kingsbury, R. C., and McKnight, S. L. (1988). Functional dissection of VP16, the trans-activator of herpes simplex virus immediate early gene expression. Genes Dev. 2, 718-729.
38. van den Ent, F. M., van Wijnen, A. J., Last, T. J., Bortell, R., Stein, J. L., Lian, J. B., and Stein, G. S. (1993). Concerted control of multiple histone promoter factors during cell density inhibition of proliferation in osteosarcoma cells: Reciprocal regulation of cell cycle-controlled and bone-related genes. Cancer Res. 53, 2399-2409.
39. van Wijnen, A. J., Ramsey-Ewing, A. L., Bortell, R., Owen, T. A., Lian, J. B., Stein, J. L., and Stein, G. S. (1991). Transcriptional element H4-site II of cell cycle regulated human H4 histone genes is a multipartite protein/DNA interaction site for factors HiNF-D, HiNF-M, and HiNF-P: involvement of phosphorylation. J. Cell Biochem. 46, 174-189.
40. van Wijnen, A. J., Bidwell, J. P., Fey, E. G., Penman, S., Lian, J. B., Stein, J. L., and Stein, G. S. (1993). Nuclear matrix association of multiple sequence-specific DNA binding activities related to SP-1, ATF, CCAAT, C/EBP, OCT-1, and AP-1. Biochemistry 32, 8397-8402.
41. Wagner, E. K., Guzowski, J. F., and Singh, J. (1995). "Progress in Nucleic Acid Research and Molecular Biology" (W. E. Cohen and K. Moldave, Eds.), pp. 123-168. Academic Press, San Diego.
42. Wagner, E. K., Petroski, M. D., Pande, N. T., Lieu, P., and Rice, M. K. (1998). Analysis of factors influencing the kinetics of herpes simplex virus transcript expression utilizing recombinant virus. Methods, [in press]
43. Zawel, L., and Reinberg, D. (1995). Common themes in assembly and function of eukaryotic transcription complexes. Annu. Rev. Biochem. 64, 533-561.
44. Zhang, Y. F., and Wagner, E. K. (1987). The kinetics of expression of individual herpes simplex virus type 1 transcripts. Virus Genes 1, 49-60.