Evidence for the location of bicyclomycin binding to the Escherichia coli transcription termination factor Rho

Journal of Biological Chemistry

Volumn 273, Issue 51, 1998, Pages 34033-34041

  Riba, Isabel ^a   Gaskell, Simon J ^a   Cho, Hangjin ^b   Widger, William R ^b   Kohn, Harold ^b  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b University of Houston   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BICOZAMYCIN; TRANSCRIPTION TERMINATION FACTOR RHO;

ARTICLE; BINDING SITE; COVALENT BOND; DRUG RECEPTOR BINDING; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE LOCATION; GENETIC REGULATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; TANDEM MASS SPECTROMETRY; TRANSCRIPTION TERMINATION;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; BICYCLO COMPOUNDS, HETEROCYCLIC; BINDING SITES; ESCHERICHIA COLI; KINETICS; LYSINE; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PEPTIDE FRAGMENTS; POLY C; RHO FACTOR; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 0032545418     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.273.51.34033     Document Type: Article

References (49)

1. Miyoshi, T., Miyari, N., Aoki, H., Kohsaka, M., Sakai, H., and Imanaka, H. (1972) J. Antibiot. (Tokyo) 25, 569-575
2. Kamiya, T., Maeno, S., Hashimoto, M., and Mine, Y. (1972) J. Antibiot. (Tokyo) 25, 576-581
3. Nishida, M., Mine, Y., and Matsubara, T. (1972) J. Antibiot. (Tokyo) 25, 582-593
4. Nishida, M., Mine, Y., Matsubara, T., Goto, S., and Kuwahara, S. (1972) J. Antibiot. (Tokyo) 25, 594-601
5. Miyamura, S., Ogasawara, N., Otsuka, H., Niwayama, S., Takana, H., Take, T., Uchiyama, T., Ochiai, H., Abe, K., Koizumi, K., Asao, K., Matuski, K., and Hoshino, T. (1972) J. Antibiot. (Tokyo) 25, 610-612
6. Miyamura, S., Ogasawara, N., Otsuka, H., Niwayama, S., Tanaka, H., Take, T., Uchiyama, T., and Ochiai, H. (1973) J. Antibiot. (Tokyo) 26, 479-484
7. Tanaka, N. (1979) Antibiotics (N Y) 5, 18-25
8. Williams, R. M., and Durham, C. A. (1988) Chem. Rev. 88, 511-540
9. Zwiefka, A., Kohn, H., and Widger, W. R. (1993) Biochemistry 32, 3564-3570
10. Finger, L. R., and Richardson, J. P. (1982) J. Mol. Biol. 156, 203-219
11. Oda, T., and Takanami, M. (1972) J. Mol. Biol. 71, 799-802
12. Knopf, K.-W., and Bujard, H. (1975) Eur. J. Biochem. 53, 371-385
13. Bear, D. G., Hicks, P. S., Andrews, C. L., McSwiggen, J. A., Escudero, K. W., and von Hippel, P. H. (1988) J. Mol. Biol. 199, 623-635
14. Horiguchi, T., Miwa, Y., and Shigesada, K. (1997) J. Mol. Biol. 269, 514-528
15. Geiselmann, J., Wang, Y., Seifried, S. E., and von Hippel, P. H. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 7754-7758
16. Richardson, J. P. (1991) Cell 64, 1047-1049
17. Martinez, A., Burns, C. M., and Richardson, J. P. (1996) J. Mol. Biol. 257, 909-918
18. Richardson, J. P., and Ruteshouser, E. C. (1986) J. Mol. Biol. 189, 413-419
19. Morgan, W. D., Bear, D. G., and von Hippel, P. H. (1983) J. Biol. Chem. 238, 9553-9564
20. McSwiggen, J. A., Bear, D. G., and von Hippel, P. H. (1988) J. Mol. Biol. 199, 609-622
21. Brennan, C. A., Dombroski, A. J., and Platt, T. (1987) Cell 48, 945-952
22. Park, H.-G., Zhang, X. D., Moon, H.-S., Zwiefka, A., Cox, K., Gaskell, S. J., Widger, W. R., and Kohn, H. (1995) Arch. Biochem. Biophys. 323, 447-454
23. Magyar, A., Zhang, X., Kohn, H., and Widger, W. R. (1996) J. Biol. Chem. 271, 25369-25374
24. Nowatzke, W., Richardson, L., and Richardson, J. P. (1996) Methods Enzymol. 274, 353-363
25. Someya, S., Iseki, M., and Tanaka, N. (1979) J. Antibiot. (Tokyo) 32, 402-407
26. Abuzar, S., and Kohn, H. (1989) J. Am. Chem. Soc. 111, 4985-4903
27. Abuzar, S., and Kohn, H. (1990) J. Am. Chem. Soc. 112, 3114-3121
28. Abuzar, S., and Kohn, H. (1989) J. Org. Chem. 54, 4000-4003
29. Kamiya, T., Maeno, S., Hashimoto, M., and Mine, Y. (1972) J. Antibiot. (Tokyo) 25, 576-581
30. Silverman, R. B. (1992) The Organic Chemistry of Drug Design and Drug Action, Chap. 5, Academic Press, New York
31. Park, H.-G., Zhang, X., Widger, W. R., and Kohn, H. (1996) J. Org. Chem. 61, 7750-7755
32. Santillan, A., Jr., Park, H.-G., Zhang, X., Lee, O.-S., Widger, W. R., and Kohn, H. (1996) J. Org. Chem. 61, 7756-7763
33. Park, H.-G., Zhang, Z., Zhang, X., Widger, W. R., and Kohn, H. (1996) J. Org. Chem. 61, 7764-7776
34. Cho, H., Park, H.-G., Zhang, X., Riba, I., Gaskell, S. J., Widger, W. R., and Kohn, H. (1997) J. Org. Chem. 62, 5432-5440
35. Mott, J. E., Grant, R. A., Ho, Y.-S., and Platt, T. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 88-92
36. Lowiy, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265-275
37. Sharp, J. A., Galloway, J. L., and Platt, T. (1983) J. Biol. Chem. 258, 3482-3486
38. Ferrige, A. G., Seddon, M. J., and Jarvis, S. (1991) Rapid Commun. Mass Spectrom. 5, 374-379
39. Lowery, C., and Richardson, J. P. (1977) J. Biol. Chem. 252, 1375-1380
40. Seifried, S. E., Wang, Y., and von Hippel, P. H. (1988) J. Biol. Chem. 263, 13511-13514
41. Bear, D. G., Andrews, C. L., Singer, J. D., Morgan, W. D., Grant, R. A., von Hippel, P. H., and Platt, T. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 1911-1915
42. Roepstorff, P., and Fohlman, J. (1984) Biomed. Mass Spectrom. 11, 601
43. Engel, D., and Richardson, J. P. (1984) Nucleic Acids Res. 12, 7389-7400
44. Dombroski, A. J., LaDine, J. R., Cross, R. L., and Platt, T. (1988) J. Biol. Chem. 263, 18810-18815
45. O, I.-S., and Stitt, B. L. (1994) J. Biol. Chem. 269, 5009-5015
46. Miwa, Y., Horiguchi, T., and Shigesada, K. (1995) J. Mol. Biol. 254, 815-837
47. Mori, H., Imai, M., and Shigesada, K (1989) J. Mol. Biol. 210, 39-49
48. Nowatzke, W. L., Keller, E., Koch, G., and Richardson, J. P. (1997) J. Bacteriol. 179, 5238-5240
49. Cho, H. (1998) Studies Directed toward the Identification of the Bicyclomycin Binding Domain in Rho: Use of Affinity Labels. M.S. thesis, University of Houston