High resolution mapping DNAs by R-loop atomic force microscopy

Nucleic Acids Research

Volumn 26, Issue 20, 1998, Pages 4603-4610

  Klinov, Dmitry V ^a   Lagutina, Irina V ^a   Prokhorov, Valery V ^a   Neretina, Tatyana ^a   Khil, Pavel P ^a   Lebedev, Yuri B ^a   Cherny, Dmitry I ^b   Demin, Victor V ^a   Sverdlov, Eugene D ^a,b  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

GLYOXAL; MAGNESIUM ION;

ARTICLE; ATOMIC FORCE MICROSCOPY; COSMID; DNA DETERMINATION; DNA DNA HYBRIDIZATION; GENE MAPPING; GENETIC DISORDER; LONG TERMINAL REPEAT; NONHUMAN; PLASMID; PRIORITY JOURNAL; RETROVIRUS;

COSMIDS; ENDOGENOUS RETROVIRUSES; GLYOXAL; HETERODUPLEX ANALYSIS; HUMANS; MICROSCOPY, ATOMIC FORCE; NUCLEIC ACID HETERODUPLEXES; PHYSICAL CHROMOSOME MAPPING; PLASMIDS; POLYMERASE CHAIN REACTION; RESTRICTION MAPPING; RNA PROBES; TERMINAL REPEAT SEQUENCES;

HUMAN ENDOGENOUS RETROVIRUS; MICA; NEGIBACTERIA; RNA VIRUSES; UNIDENTIFIED RETROVIRUS;

EID: 0032531750     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.20.4603     Document Type: Article

References (41)

1. Delain, E. and Le Cam, E. (1995) In Morel, G. (ed.), Visualisation of Nucleic Acids. CRC Press Inc., Boca Raton, FL, pp. 331-356.
2. Kurakin, A.V., Zaritskaya, L.S., Metliskaya, A.Z., Volodin, A.A. and Cherny, D.I. (1991) Micron and Microscopica Acta, 22, 213-221.
3. Demidov, V.V., Cherny, D.I., Kurakin, A.V., Yavnilovich, M.V., Malkov, V.A., Frank-Kamenetskii, M.D., Sonnichsen, S.H. and Nielsen, P.E. (1994) Nucleic Acids Res., 22, 5218-5222.
4. Cherny, D.I., Belotserkovskii, B.P., Frank-Kamenetskii, M.D., Egholm, M., Buchardt, O., Berg, R.H. and Nielsen, P.E. (1993) Proc. Natl Acad. Sci. USA, 90, 1667-1670.
5. Cherny, D.I., Malkov, V.A., Volodin, A.A. and Frank-Kamenetskii, M.D. (1993) J. Mol. Biol., 230, 379-383.
6. Lagutina, I.V., Yurkova, E.V., Azhikina, T.L., Potapov, V.K., Smith, C.L. and Sverdlov, E.D. (1996) Genet. Anal., 13, 9-14.
7. Brack, C. (1981) Crit. Rev. Biochem., 10, 113-169.
8. Bustamante, C., Vesenka, J., Tang, C.L., Rees, W., Guthold, M. and Keller, R. (1992) Biochemistry, 31, 22-26.
9. Hansma, H.G., Vesenka, J., Siegerist, C., Kelderman, G., Morrett, H., Sinsheimer, R.L., Elings, V., Bustamante, C. and Hansma, P.K. (1992) Science, 256, 1180-1184.
10. Delain, E., Fourcade, A., Poulin, J.-C., Barbin, A., Coulaud, D., Le Cam, E. and Paris, E., (1992) Microsc. Microanal. Microsctruct., 3, 457-470.
11. Hansma, H.G., Bezanilla, M., Zenhauserm, F., Adrian, M. and Sinsheimer, R.L. (1993) Nucleic Acids Res., 21, 505-512.
12. Hansma, H.G., Laney, D.E., Bezanilla, M., Sinsheimer, R.L. and Hansma, P.K. (1995) Biophys. J., 68, 1672-1677.
13. Erie, D.A., Yang, G., Schultz, H.C. and Bustamante, C. (1994) Science, 266, 1562-1566.
14. Pfannschmidt, C., Schaper, A., Heim, G., Jovin, T.M. and Langowski, J. (1996) Nucleic Acids Res., 24, 1702-1709.
15. Pietrasanta, L.I., Schaper, A. and Jovin, T.M. (1994) Nucleic Acids Res., 22, 3288-3292.
16. Garcia, R.A., Bustamante, C. and Reich, N.O. (1996) Proc. Natl Acad. Sci. USA, 93, 7618-7622.
17. Cherny, D.I., Fourcade, A., Svinarchuk, F., Malvy, C., Nielsen, P.E. and Delain, E. (1998) Biophysical J., 74, 1015-1023.
18. Patience, C., Wilkinson, D.A. and Weiss, R.A. (1997) Trends Genet., 13, 116-120.
19. Lower, R., Lower, J. and Kurth, R. (1996) Proc. Natl Acad. Sci. USA, 93, 5177-5184.
20. Liu, A.Y. and Abraham, B.A. (1991) Cancer Res., 51, 4107-4110.
21. Kato, N., Shimotohno, K., VanLeeuwen, D. and Cohen, M. (1990) Mol. Cell. Biol., 10, 4401-4405.
22. Feuchter, A., Freeman, J.D. and Mager, D.L. (1992) Genomics, 13, 1237-1245.
23. Feuchter-Murthy, A.E., Freeman, J.D. and Mager, D.L. (1993) Nucleic Acids Res., 21, 135-143.
24. Di Cristofano, A., Strazzullo, M., Longo, L. and La Mantia, G. (1995) Nucleic Acids Res., 23, 2823-2830.
25. Ting, C.N., Rosenberg, M.P., Snow, C.M., Samuelson, L.C. and Meisler, M.H. (1992) Genes Dev., 6, 1457-1465.
26. De Jong, P.J., Yokabata, K., Chen, C., Lohman, F., Pederson, L., McNinch, J. and Van Dilla, M. (1989) Cytogenet. Cell Genet., 51, 985.
27. Ashworth, L.K., Batzer, M.A., Brandiff, B., Branscomb, E., de Jong, P., Garcia, E., Garnes, J.A., Gordon, L.A., Lamerdin, J.E., Lennon, G., Mohrenweiser, H., Olsen, A.S., Slezak, T. and Carrano, A.V. (1995) Nature Genet., 11, 422-427.
28. Kabak, D.B., Angerer, L.M. and Davidson, N. (1976) Nucleic Acids Res., 6, 2499-2517.
29. Ono, M., Yasumaga, T., Miyata, T. and Ushikubo, H. (1986) J. Virol., 60, 589-598.
30. Thomas, M., White, R.L. and Davis, R.W. (1976) Proc. Natl Acad. Sci. USA, 73, 2294-2298.
31. Landgraf, R., Chen, C.H. and Sigman, D.S. (1995) Nucleic Acids Res., 23, 3516-3523.
32. Casey, J. and Davidson, N. (1971) Nucleic Acids Res., 4, 1539-1552.
33. Vesenka, J., Manne, S., Yang, G., Bustamante, C.J. and Henderson, E. (1993) Scanning Microsc., 7, 781-788.
34. Vinogradova, T., Volik, S., Lebedev, Y.B., Shevchenko, Y., Lavrentyeva, I., Khil, P., Grzeschik, K.-H., Ashworth, L.K. and Sverdlov, E. (1997) Gene, 199, 255-264.
35. Lavrentieva, I., Khil, P., Vinogradova, T., Akhmedov, A., Lapuk, A., Shakhova, O., Lebedev, Y.B., Monastyrskaya, G. and Sverdlov, E.D. (1998) Hum. Genet., 102, 107-116.
36. Khil, P.P., Lebedev, Y.B. and Sverdlov, E.D. (1997) Dokl. Akad. Nauk, 356, 833-837.
37. Lukyanov, S.A., Gurskaya, N.G., Lukyanov, K.A., Tarabykin, V.S. and Sverdlov, E.D. (1994) Bioorg. Khim., 20, 701-704.
38. Siebert, P.D., Chenchik, A., Kellog, D.E., Lukyanov, K.A. and Lukyanov, S.A. (1995) Nucleic Acids Res., 23, 1087-1088.
39. Chow, L.T., Roberts, J.M., Lewis, J.B. and Broke, T.R. (1977) Cell, 11, 819-836.
40. Griffith, J.D. (1978) Science, 201, 525-527.
41. Milman, G., Langridge, R. and Chamberlin, M.J. (1967) Proc. Natl Acad. Sci. USA, 57, 1804-1810.