Sequence-specific labeling of superhelical DNA by triple helix formation and psoralen crosslinking

Nucleic Acids Research

Volumn 24, Issue 9, 1996, Pages 1702-1709

  Pfannschmidt, Claudia ^a   Schaper, Achim ^b   Heim, Gudrun ^b   Jovin, Thomas M ^b   Langowski, Jörg ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^b MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE PHOSPHATASE; AVIDIN; BIOTIN; CIRCULAR DNA; OLIGONUCLEOTIDE; PSORALEN; STREPTAVIDIN;

ANIMAL CELL; ARTICLE; CHEMOLUMINESCENCE; CONTROLLED STUDY; COVALENT BOND; DNA ADDUCT; DNA CONFORMATION; DNA CROSS LINKING; DNA PROBE; DNA SEQUENCE; DNA SUPERCOILING; NONHUMAN; PH; PLASMID; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; SCANNING FORCE MICROSCOPY; TRIPLE HELIX;

BASE SEQUENCE; BINDING SITES; BIOTIN; CROSS-LINKING REAGENTS; DNA; DNA ADDUCTS; DNA, SUPERHELICAL; FICUSIN; MICROSCOPY, ATOMIC FORCE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; PLASMIDS; ULTRAVIOLET RAYS;

EID: 0029869547     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.9.1702     Document Type: Article

References (47)

1. Bazett-Jones,D.P, Leblanc,B., Herfort,M. and Moss,T. (1994) Science, 264, 1134-1137.
2. Mastrangelo,I.A., Courey,A.J., Wall,J.S , Jackson,S.P. and Hough,P.V.C. (1991) Proc. Natl. Acad. Sci. USA, 88, 5670-5674
3. Su,W., Jackson,S., Tjian,R. and Echok,H. (1991) Genes Dev., 5, 820-826.
4. Su,W., Porter,S., Kustu,S. and Echols,H. (1990) Proc. Natl. Acad. Sci. USA, 87, 5504-5508.
5. Borowiec,J.A., Zhang,L., Sasse-Dwight,S. and Gralla,J.D. (1987) J. Mol. Biol., 196, 101-111.
6. Klenin,K., Frank-Kamenetskii,M.D. and Langowski,J. (1995) Biophys. J., 68, 81-88.
7. Vologodskii,A. V., Levene,S.D., Klenin,K.V., Frank-Kamenetskii,M.D. and Cozzarelli,N.R. (1992) J. Mol. Biol., 227, 1224-1243.
8. Chirico,G. and Langowski,J. (1994) Biopolymers, 34, 415-433.
9. Zhang,P.S., Tobias,I. and Olson,W.K. (1994) J. Mol. Biol., 242, 271-290.
10. Olson,W.K., Marky,N.L., Jernigan,R.L. and Zhurkin,V.B. (1993) J. Mol. Biol. 232, 530-554.
11. Plum,G.E., Pilch,D.S., Singleton,S.F. and Breslauer,K.J. (1995)Annu. Rev. Biophys. Biomol. Struct., 24, 319-350.
12. Cooney,M., Czemuszewicz,G., Postel,E.H., Flint,S.J. and Hogan,M.E. (1988) Science, 241, 456-459.
13. Praseuth,D., Perrouault,L., Le Doan,T., Chassignol,M., Thuong,N.T. and Hélène,C. (1988) Proc. Natl. Acad. Sci. USA, 85, 1349-1353.
14. Lyamichev,V.I., Mirkin,S.M., Frank-Karnenetskii,M.D. and Cantor,C.R. (1988) Nucleic Acids Res., 16, 2165-2178.
15. Thomas,G.A. and Peticolas,W.L. (1991) J. Biomol. Struct. Dyn., 9, 437-445.
16. Howard,F B., Miles,H.T., Liu,K.L., Frazier,J., Raghunathan,G. and Sasisekharan,V (1992) Biochemistry, 31, 10671-10677
17. Ouali,M., Letellier,R., Adnet,F., Liquier,J., Sun,J.S., Lavery,R. and Taillandier,E. (1993) Biochemistry, 32, 2098-2103.
18. Radhakrishnan,I. and Patel,D J. (1994) Biochemistry, 33, 11405-11416.
19. Sun,J.S. and Hélène,C. (1993) Curr. Opin. Struct. Biol., 3, 345-356.
20. Moser,H. and Dervan P.D (1987) Science, 238, 645-650.
21. Cimino,G.D., Gamper,H.B., Isaacs,S.T. and Hearst,J.E. (1985) Annu. Rev. Biochem., 54, 1151-1193.
22. Takasugi,M., Guendouz,A., Chassignol,M., Decout,J.L., Lhomme,J., Thuong,N.T. and Hélène,C. (1991) Proc. Natl. Acad. Sci. USA, 88, 5602-5606.
23. Gasparro,F.P., Havre,P.A., Olack,G.A., Gunther,E.J. and Glazer,P.M. (1994) Nucleic Acids Res., 22, 2845-2852.
24. Wittung,P., Kim,S.K., Buchardt,O., Nielsen,P. and Norden,B. (1994) Nucleic Acids Res., 22, 5371-5377.
25. Grigoriev,M., Praseuth,D., Guieysse,A.L., Robin,P., Thuong,N.T., Hélene.C. and Harel-Bellan,A. (1993) Proc. Natl. Acad. Sci. USA, 90, 3501-3505
26. Giovannangeli,C , Thuong,N.T. and Hélène.C. (1993) Proc. Natl. Acad. Sci. USA, 90, 10013-10017.
27. Wang,G., Levy,D.D., Seidmann,M.M. and Glazer,P.M. (1995) Mol. Cell. Biol., 15, 1759-1768.
28. Wang,G. and Glazer,P.M (1995) J. Biol. Chem., 270, 22595-22601.
29. Havre,P.A., Gunther,E.J., Gaspairo,F.P. and Glazer,P.M. (1993) Proc. Natl. Acad. Sci. USA, 90, 7879-7883.
30. Spielmann,H.P., Dwyer,T.J., Sastry,S.S., Hearst,J.E. and Wemmer,D.E. (1995) Proc. Natl. Acad. Sci. USA, 92, 2345-2349.
31. Kanne,D., Straub,K., Hearst,E.J. and Rapoport,H. (1982) J. Am. Chem. Soc., 104, 6754-6764.
32. Havre,P.A. and Glazer,P.M. (1993) J. Virol., 67, 7324-7331.
33. Cherny,D.I., Kurakin,A.V., Lyamichev,V.I., Frank-Kamenetskii,M D., Zinkevich,V.E., Firman,K. and Nielsen,P.E. (1994) J Mol. Recognition, 7, 171-176.
34. Ito,T., Snuth,C.L. and Cantor,C R. (1992) Proc. Natl. Acad. Sci. USA, 89, 495-498.
35. Cherny,D.I., Malkov,V.A., Volodin,A.A. and Frank-Kamenetskii,M.D. (1993) J. Mol. Biol., 230, 379-383.
36. Kremer,W., Klenin,K., Diekmann,S. and Langowski,J. (1993) EMBO J., 12, 4407-4412.
37. Schaper,A., Starink,J P.P. and Jovin,T.M. (1994) FEBS Lett., 355, 91-95.
38. Jaenicke,T., Diedench,K.W., Haas,W., Schleich,J., Lichter,P., Pfordt,M., Bach,A. and Vosberg,H.-P. (1990) Genomics, 8, 194-206.
39. Birnboim,H.C. (1983) Methods Enzymol., 100, 243-255.
40. Kapp,U. and Langowski,J. (1992) Anal. Biochem., 206, 293-299.
41. Bustamante,C., Vesenka,J., Tang,C.L., Rees,W., Guthold,M. and Keller,R. (1992) Biochemistry, 31, 22-26.
42. Wilchek,M and Bayer,E.A. (1990) Methods Enzymol., 184.
43. Best,G.C. and Dervan,PB, (1995) J. Am. Chem. Soc., 117, 1187-1193.
44. Greenberg,W.A. and Dervan,P.B. (1995) J. Am. Chem. Soc., 117, 5016-5022.
45. Green,M. (1990) Methods Enzymol., 184, 51-67.
46. Pilch,D S., Levenson,C. and Shafer,R.H. (1991) Biochemistry, 30, 6081-607.
47. Zhurkin,V.B., Raghunathan,G , Ulyanov,N.B., Camerini-Otero,R.D. and Jernigan,R L. (1994) J. Mol. Biol., 239, 181-200.