Genomic organization and promoter characterization of the mouse and human genes encoding p62 subunit of the transcription/DNA repair factor TFIIH

Gene

Volumn 213, Issue 1-2, 1998, Pages 73-82

  Perez, Christophe ^a   Auriol, Jérôme ^a   Seroz, Thierry ^a   Egly, Jean Marc ^a  

^a INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

Exon intron structure; Gene expression; Sequence comparison; Start site

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DNA REPAIR; EMBRYO; GENE EXPRESSION; GENE LOCATION; GENETIC ORGANIZATION; HUMAN; HUMAN CELL; MOLECULAR CLONING; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; TATA BOX;

3T3 CELLS; ANIMALS; BASE SEQUENCE; CELL LINE; CLONING, MOLECULAR; COS CELLS; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION; GENE LIBRARY; GENES; HELA CELLS; HUMANS; MICE; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PROMOTER REGIONS (GENETICS); RECOMBINANT FUSION PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; TRANSCRIPTION FACTOR TFIIH; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, TFII; TRANSFECTION;

ANIMALIA; RODENTIA;

EID: 0032526222     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00197-8     Document Type: Article

References (31)

1. Adamczewski J., Rossignol M., Tassan J.P., Nigg E.A., Moncollin V., Egly J.M. MAT1, cdk7 and cyclin H form a kinase complex which is UV light sensitive upon association with TFIIH. EMBO J. 15:1996;1877-1884.
2. Breathnach R., Chambon P. Organization and expression of eucaryotic split genes coding for proteins. Annu. Rev. Biochem. 50:1981;349-383.
3. Broughton B.C., Steingrimsdottir H., Weber C.A., Lehmann A.R. Mutations in the xeroderma pigmentosum group D DNA repair/transcription gene in patients with trichothiodystrophy. Nature Genet. 7:1994;189-194.
4. Conaway R.C., Conaway J.W. General initiation factors for RNA polymerase. Annu. Rev. Biochem. 62:1993;161-190.
5. Drapkin R., Le Roy G., Cho H., Akoulitchev S., Reinberg D. Human cyclin-dependent kinase-activating kinase exists in three distinct complexes. Proc. Natl. Acad. Sci. USA. 93:1996;6488-6493.
6. Evans E., Moggs J.G., Hwang J.R., Egly J.M., Wood R.D. Mechanism of open complex and dual incision formation by human nucleotide excision repair factors. EMBO J. 16:1997;6559-6573.
7. Feaver W.J., Svejstrup J.Q., Henry N.L., Kornberg R.D. Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK. Cell. 79:1994;1103-1109.
8. Fischer L., Gérard M., Chalut C., Lutz Y., Humbert S., Kanno M., Chambon P., Egly J.M. Cloning of the 62-kilodalton component of basic transcription factor BTF2. Science. 257:1992;1392-1395.
9. Fisher R.P., Jin P., Chamberlin H.M., Morgan D.O. Alternative mechanisms of CAK assembly require an assembly factor or and activating kinase. Cell. 83:1995;47-57.
10. Ghosh D. The transcription factors database. Nucleic Acids Res. 20:1992;2091-2093.
11. Heng H.H.Q., Xiao H., Shi X.M., Greenblatt J., Tsui L.C. Genes encoding general initiation factors for RNA polymerase II are dispersed in the human genome. Hum. Mol. Genet. 3:1993;61-64.
12. Hoeijmakers J.H.J., Egly J.M., Vermeulen W. TFIIH: a key component in multiple DNA transactions. Curr. Opin. Genet. Dev. 6:1996;26-33.
13. Holstege F.C.P., van der Vliet P.C., Timmers M.H.T. Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors TFIIE and IIH. EMBO J. 15:1996;1666-1677.
14. Humbert S., van Vuuren H., Lutz Y., Hoeijmakers J.H.J., Egly J.M., Moncollin V. p44 and p34 subunits of the BTF2/TFIIH transcription factor have homologies with SSL, a yeast protein involved in DNA repair. EMBO J. 13:1994;2393-2398.
15. Javahery R., Khachi A., Lo K., Zenzie-Gregory B., Smale S.T. DNA sequence requirements for transcriptional initiator activity in mammalian cells. Mol. Cel. Biol. 14:1994;116-127.
16. Marinoni J.C., Roy R., Vermeulen W., Miniou P., Lutz Y., Weeda G., Seroz T., Molina Gomez D., Hoeijmakers J.H.J., Egly J.M. Cloning and characterization of p52, the fifth subunit of the core of the DNA repair/transcription factor TFIIH. EMBO J. 16:1997;1093-1102.
17. Ohkuma Y., Roeder R.G. Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation. Nature. 368:1994;160-163.
18. Reardon J.T., Ge H., Gibbs E., Sancar A., Hurwitz J., Pan Z.-Q. Isolation and characterization of two human transcription factor IIH (TFIIH)-related complexes: ERCC2/CAK and TFIIH. Proc. Natl. Acad. Sci. USA. 93:1996;6482-6487.
19. Roy R., Adamczewski J.P., Seroz T., Vermeulen W., Tassan J.P., Schaeffer L., Hoeijmakers J.H.J., Egly J.M. The MO15 cell cycle kinase is associated with the TFIIH transcription-DNA repair factor. Cell. 79:1994;1093-1101.
20. Schaeffer L., Roy R., Humbert S., Moncollin V., Vermeulen W., Hoeijmakers J.H.J., Chambon P., Egly J.M. DNA repair helicase: A component of BTF2 (TFIIH) basic transcription factor. Science. 260:1993;58-63.
21. Schaeffer L., Moncollin V., Roy R., Staub A., Mezzina M., Sarasin A., Weeda G., Hoeijmakers J.H.J., Egly J.M. The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor. EMBO J. 13:1994;2388-2392.
22. Schmidt E.E., Schibler U. High accumulation of components of the RNA polymerase II transcription machinery in rodent spermatids. Development. 121:1995;2373-2383.
23. Serizawa H., Mäkelä T.P., Conaway J.W., Conaway R.C., Weinberg R.A., Young R.A. Association of Cdk-activating kinase subunits with transcription factor TFIIH. Nature. 374:1995;280-282.
24. Smale S.T., Baltimore D. The 'initiator' as a transcription control element. Cell. 57:1989;103-113.
25. Sung P., Bailly V., Weber C., Thompson L.H., Prakash L., Prakash S. Human xeroderma pigmentosum group D gene encodes a DNA helicase. Nature. 365:1993;852-855.
26. Svejstrup J.Q., Vichi P., Egly J.M. The multiple roles of transcription/repair factor TFIIH. Trends Biochem. Sci. 20:1996;346-350.
27. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
28. Weber C.A., Salazar E.P., Stewart S.A., Thompson L.H. ERCC2: cDNA cloning and molecular characterization of human nucleotide excision repair gene with high homology to yeast RAD3. EMBO J. 9:1990;1437-1447.
29. Weeda G., Ma L., van Ham R.C.A., Bootsma D., van der Eb A.J., Hoeijmakers J.H.J. Characterization of the mouse homolog of the XPBC/ERCC-3 gene implicated in xeroderma pigmentosum and Cockayne's syndrome. Carcinogenesis. 12:1991;2361-2368.
30. Weeda G., Ma L., van der Ham R., van der Eb A.J., Hoeijmakers J.H.J. Structure and expression of the human XPBC/ERCC-3 gene involved in DNA repair disorders xeroderma pigmentosum and Cockayne's syndrome. Nucleic Acids Res. 19:1991;6301-6308.
31. Yankulov K.Y., Yamashita K., Roy R., Egly J.M., Bentley D.L. The transcriptional elongation inhibitor 5, 6-Dichloro-1-β-ribofuranosylbenzimidazole inhibits transcription factor IIH asociated protein kinase. J. Biol. Chem. 270:1995;23922-23925.