Distribution of the pressure-regulated operons in deep-sea bacteria

FEMS Microbiology Letters

Volumn 159, Issue 2, 1998, Pages 159-166

  Li, Lina ^a   Kato, Chiaki ^a   Nogi, Yuichi ^a   Horikoshi, Koki ^a  

^a Japan Agency for Marine Earth Science and Technology   (Japan)

Author keywords

16S rRNA; Barophilic bacteria; Deep sea bacteria; High pressure adaptation; Phylogeny; Pressure regulation; Shewanella sp.

Indexed keywords

RIBOSOME RNA;

ARTICLE; BACTERIUM; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; DNA SEQUENCE; GENE AMPLIFICATION; GENE CONTROL; GENE SEQUENCE; GENETIC MARKER; HYPERBARISM; NONHUMAN; OPERON; PHYLOGENY; POLYMERASE CHAIN REACTION; PRESSURE; PRIORITY JOURNAL; SEA; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; DNA, BACTERIAL; GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OPERON; PHYLOGENY; POLYMERASE CHAIN REACTION; PRESSURE; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); SHEWANELLA; SHEWANELLA SP.;

EID: 0032519913     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(97)00560-0     Document Type: Article

References (28)

1. Zobell, C.E. and Morita, R.Y. (1957) Barophilic bacteria in some deep-sea sediments. J. Bacteriol. 73, 563-568.
2. Yayanos, A.A. (1995) Microbiology to 10 500 meters in the deep sea. Annu. Rev. Microbiol. 49, 777-805.
3. Kato, C., Inoue, A. and Horikoshi, K. (1996) Isolating and characterizing deep-sea marine microorganisms. Trends Biotechnol. 14, 6-12.
4. Kato, C., Masui, N. and Horikoshi, K. (1996) Properties of obligately barophilic bacteria isolated from a sample of deep-sea sediment from the Izu-Bonin trench. J. Mar. Biotechnol. 4, 96-99.
5. Kato, C., Sato, T. and Horikoshi, K. (1995) Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodivers. Conserv. 4, 1-9.
6. Bartlett, D., Wright, M., Yayanos, A.A. and Silverman, M. (1989) Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium. Nature 342, 572-574.
7. Kato, C., Smorawinska, M., Sato, T. and Horikoshi, K. (1995) Cloning and expression in Escherichia coli of a pressure-regulated promoter region from a barophilic bacterium, strain DB6705. J. Mar. Biotechnol. 2, 125-129.
8. Kato, C., Smorawinska, M., Sato, T. and Horikoshi, K. (1996) Analysis of a pressure-regulated operon from the barophilic bacterium strain DB6705. Biosci. Biotechnol. Biochem. 60, 166-168.
9. Kato, C., Ikegami, A., Smorawinska, M., Usami, R. and Horikoshi, K. (1997) Structure of genes in a pressure-regulated operon and adjacent regions from a barotolerant bacterium strain DSS12. J. Mar. Biotechnol. 5, 210-218.
10. Welch, T.J. and Bartlett, D.H. (1996) Isolation and characterization of the structural gene for OmpL, a pressure-regulated porin-like protein from the deep-sea bacterium Photobacterium species strain SS9. J. Bacteriol. 178, 5027-5031.
11. Bartlett, D.H., Kato, C. and Horikoshi, K. (1995) High pressure influences on gene and protein expression. Res. Microbiol. 146, 697-706.
12. Kato, C., Tamegai, H., Ikegami, A., Usami, R. and Horikoshi, K. (1996) Open reading frame 3 of the barotolerant bacterium strain DSS12 is complementary with cydD in Escherichia coli: cydD functions are required for cell stability at high pressure. J. Biochem. 120, 301-305.
13. DeLong, E.F. and Yayanos, A.A. (1986) Biochemical function and ecological significance of novel bacterial lipids in deep-sea prokaryotes. Appl. Environ. Microbiol. 51, 730-737.
14. Deming, J.W., Hada, H., Colwell, R.R., Luehrsen, K.R. and Fox, G.E. (1984) The ribonucleotide sequence of 5S rRNA from two strains of deep-sea barophilic bacteria. J. Gen. Microbiol. 130, 1911-1920.
15. MacDonell, M.T. and Colwell, R.R. (1985) Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst. Appl. Microbiol. 6, 171-182.
16. Yayanos, A.A., Dietz, A.S. and Van Boxtel, R. (1982) Dependence of reproduction rate on pressure as a hallmark of deep-sea bacteria. Appl. Environ. Microbiol. 44, 1356-1361.
17. DeLong, E.F. (1986) Adaptations of Deep-sea Bacteria to the Abyssal Environment. Ph.D. Thesis, University of California, San Diego, CA.
18. Kato, C., Suzuki, S., Hata, S., Ito, T. and Horikoshi, K. (1995) The properties of a protease activated by high pressure from Sporosarcina sp. strain DSK25 isolated from deep-sea sediment. JAMSTEC R. 32, 7-13.
19. Jensen, M.J., Tebo, B.M., Baumann, P., Mandel, M. and Nealson, K.H. (1980) Characterization of Alteromonas hanedai (sp. nov.), a non-fermentative luminous species of marine origin. Curr. Microbiol. 3, 311-315.
20. Rossello-Mora, R.A., Caccavo Jr., F., Osterlehner, K., Springer, N., Spring, S., Schuler, D., Ludwig, W., Amann, R., Vanncanneyt, M. and Schleifer, K.H. (1994) Isolation and taxonomic characterization of a halotolerant, facultatively iron-reducing bacterium. Syst. Appl. Microbiol. 17, 569-573.
21. Owen, R., Legros, R.M. and Lapage, S.P. (1978) Base composition, size and sequence similarities of genome deoxyribonucleic acids from clinical isolates of Pseudomonas putrefaciens. J. Gen. Microbiol. 104, 127-138.
22. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
23. Kato, C., Li, L., Tamaoka, J. and Horikoshi, K. (1997) Molecular analyses of the sediment of the 11000 m deep Mariana Trench. Extremophiles 1, 117-123.
24. Ezaki, T., Hashimoto, Y. and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224-229.
25. Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
26. Saffarini, D.A. and Nealson, K.H. (1993) Sequence and genetic characterization of etrA, an fnr analog that regulates anaeDeLong EF (1986) putrefaciens MR-1. J. Bacteriol. 175, 7938-7944.
27. Wayne, L.G., Brenner, D.J., Colwell, R.R., Grimont, P.A.D., Kandler, O., Krichevsky, M.I., Moore, L.H., Moore, W.E.C., Murray, R.G.E., Stackbrandt, E., Starr, M.P. and Truper, H.G. (1987) Report of the Ad Hoc Committee on reconciliation of approaches of bacterial systematics. Int. J. Syst. Bacteriol. 37, 463-464.
28. DeLong, E.F., Franks, D.G. and Yayanos, A.A. (1997) Evolutionary relationship of cultivated psychrophilic and barophilic deep-sea bacteria. Appl. Environ. Microbiol. 63, 2105-2108.