Raman and CD spectroscopy of recombinant 68-kDa DNA human topoisomerase I and its complex with suicide DNA-substrate

Biochemistry

Volumn 37, Issue 41, 1998, Pages 14630-14642

  Fleury, Fabrice ^a   Ianoul, Anatoli ^a,b   Kryukov, Eugene ^b   Sukhanova, Alyona ^b   Kudelina, Irina ^b   Wynne Jones, Abigai ^c   Bronstein, Igor B ^c   Maizieres, Michaël ^a   Berjot, Maurice ^a   Dodson, Guy G ^c   Wilkinson, Anthony J ^c   Holden, Joseph A ^d   Feofanov, Alexei V ^b   Alix, Alain J P ^a   Jardillier, Jean Claude ^a   Nabiev, Igor ^a  

^a UNIVERSITÉ DE REIMS CHAMPAGNE ARDENNE   (France)

^b SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^c UNIVERSITY OF YORK   (United Kingdom)

^d UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA TOPOISOMERASE; OLIGONUCLEOTIDE; SUICIDE SUBSTRATE; TRYPTOPHAN; TYROSINE;

ARTICLE; CIRCULAR DICHROISM; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DISULFIDE BOND; ENZYME ANALYSIS; HUMAN; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RAMAN SPECTROMETRY;

ALGORITHMS; AMINO ACID SEQUENCE; CIRCULAR DICHROISM; DISULFIDES; DNA TOPOISOMERASES, TYPE I; HUMANS; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OLIGONUCLEOTIDES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; SPECTRUM ANALYSIS, RAMAN; SUBSTRATE SPECIFICITY; TRYPTOPHAN; TYROSINE;

EID: 0032514715     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9806495     Document Type: Article

References (49)

1. Wang, J. C. (1996) Annu. Rev. Biochem. 65, 635-692.
2. Svejstrup, J. Q., Christiansen, K., Gromova, I. I., Andersen, A. H., and Westergaard, O. (1991) J. Mol. Biol. 222, 669-678.
3. Stewart, L., Ireton, G. C., and Champoux, J. J. (1996) J. Biol. Chem. 271, 7602-7608.
4. Stewart, L., Ireton, G. C., Parker, L. H., Madden, K. R., and Champoux, J. J. (1996) J. Biol. Chem. 271, 7593-7601.
5. Redinbo, M. R., Stewart, L., Kuhn, P., Champoux, J. J., and Hol, W. G. J. (1998) Science 279, 1504-1513.
6. Stewart, L., Redinbo, M. R., Qiu, X., Hol, W. G. J., and Champoux, J. J. (1998) Science 279, 1534-1541.
7. Gupta, M., Fujimori, A., and Pommier, Y. (1995) Biochim. Biophys. Acta 1262, 1-14.
8. Nunes-Dyby, S. E., Matsumoto, L., and Landy, A. (1987) Cell 50, 779-788.
9. Doolitle, R. F., Ed. (1996) Methods Enzymol. 266, 1-680.
10. Alix, A. J. P. (1997) in Biomolecular Structure and Dynamics: Recent experimental and theoretical advances, NATO, Advanced Studies Institute (Vergoten, G., and Theophanides, Eds.), series E, Applied Science, Vol. 342, pp 121-150, Kluwer Academic Publishers, Dordrecht.
11. Alix, A. J. P., Goulyaev, D. I., and Efremov, R. G. (1995) in Spectroscopy of biological molecules (Merlin, J. C., Turrell, S., and Huvenne, J. P., Eds.) pp 89-90, Kluwer Academic Publishers, Dordrecht.
12. Gololobov, G., Chernova, E., Schourov, D., Smirnov, I., Kudelina, I., and Gabibov, A. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 254-257.
13. Thomas, G. J., Jr. (1987) in Biological Applications of Raman Spectroscopy Vol. 1, (Spiro, T. G., Ed.), Raman Spectra and the Conformations of Biological Macromolecules pp 135-201, Wiley-lnterscience, New York.
14. Provencher, S. W. (1982) Technical Report EMBL DAO5, Heidelberg.
15. Berjot, M., Marx, J., and Alix, A. J. P. (1987) J. Raman Spectrosc. 18, 289-300.
16. Debelle, L., Alix, A. J. P., Jacob, M.-P., Huvenne, J.-P., Berjot, M., Sombret, B., and Legrand, P. (1995) J. Biol. Chem. 270, 26099-26103.
17. Ovchinnikov, Yu. A., Arystarkhova, E. A., Arzamazova, N. M., Dzhandzhugazyan, K. N., Efremov, R. G., Nabiev, I. R., and Modyanov, N. N. (1988) FEBS Lett. 227, 235-239.
18. Pourplanche, C., Lambert, C., Berjot, M., Marx, J., Chopard, C., Alix, A. J. P., and Larreta-Garde, V. (1994) J. Biol. Chem. 269, 31585-31591.
19. Haaland, D. M., and Thomas, E. V. (1988) Anal. Chem. 60, 1202-1206.
20. Sun, J. (1995) J. Chemom. 9, 21-25.
21. Prevelige, P., and Fasman, G. D. (1989) in Prediction of protein structure and the principles of protein conformation (Fasman, G. D., Ed.) pp 391-416, Plenum Press, New York and London.
22. Garnier, J., and Robson, B. (1989) in Prediction of protein structure and the principles of protein conformation (Fasman, G. D., Ed.) pp 417-465, Plenum Press, New York and London.
23. Spiro, T. G., Ed. (1987) Biological Applications of Raman Spectroscopy, Vol. 1, Raman Spectra and the Conformations of Biological Macromolecules Wiley-Interscience, NY.
24. Siamwiza, M. N., Lord, R. C., Chen, M. C., Takamatsu, T., Harada, I., Matsuura, H., and Shimanouchi, T. (1975) Biochemistry 14, 4870-4876.
25. Harada, I., Takeuchi, H. (1986) in Advances in Spectroscopy Vol. 13, Spectroscopy of Biological Systems (Clark, R. J. H., Hester R. E., Eds.), Chapter 3, p 116, Wiley, Chichester.
26. Miura, T., Takeuchi, H., and Harada, I. (1988) Biochemistry 27, 88-94.
27. Miura, T., Takeuchi, H., and Harada, I. (1989) J. Raman Spectrosc. 20, 667-671.
28. Li, H., and Thomas, G. J., Jr. (1991) J. Am. Chem. Soc. 113, 456-462.
29. Li, T., Chen, Z., Johnson, J. E., and Thomas, G. J., Jr. (1992) Biochemistry 31, 6673-6682.
30. Benevides, J. M., and Thomas, G. J., Jr. (1983) Nucleic Acids Res. 11, 5747-5761.
31. Erfurth, S. C., and Peticolas, W. L. (1975) Biopolymers 14, 247-256.
32. Benevides, J. M., Wang, A. H.-J., van der Marel, G. A., van Boom, J. H., Rich, A., and Thomas, G. J., Jr. (1984) Nucleic Acids Res. 12, 5913-5925.
33. Bare, G. H., Alben, J. O., and Bromberg, P. A. (1975) Biochemistry 14, 1578-1588.
34. Alben, J. P., Bare, G. H., and Bromberg, P. A. (1974) Nature (London) 252, 736-739.
35. Sugeta, H., Go, A., and Miyazawa, T. (1972) Chem. Lett. 83-89.
36. Sugeta, H., Go, A., and Miyazawa, T. (1973) Bull. Chem. Soc. Jpn. 46, 3407-3409.
37. Van Wart, H. E., and Sheraga, H. A. (1976) J. Phys. Chem. 80, 1812-1822.
38. Van Wart, H. E., and Sheraga, H. A. (1976) J. Phys. Chem. 80, 1823-1829.
39. Vorotyntseva, T. I., Surin, A. M., Trakhanov, S. D., Nabiev, I., and Antonov, V. K. (1981) Biorg. Khim. 7, 45-59.
40. Stivers, J. T., Shuman. S., and Mildvan, A. S. (1994) Biochemistry 33, 327-339.
41. Thomas, G. J., Jr., Prescott, B., and Day, L. A. (1983) J. Mol. Biol. 165, 321-356.
42. Williams, R. W., McIntyre, J. O., Gaber, B. P., and Fleischer, S. (1986) J. Biol. Chem. 261, 14520-14524.
43. Stevsner, T., Mortensen, U. H., Westergaard, O., and Bonven, B. J. (1989) J. Biol. Chem. 264, 10110-10113.
44. Sekiguchi, J., and Shuman, S. (1994) J. Biol. Chem. 269, 29760-29764.
45. Bonven, B. J., Gocke, E., and Westergaard, O. (1985) Cell 41, 541-551.
46. Ness, P. J., Koller, T., and Thoma, F. (1988) J. Mol. Biol. 200, 127-139.
47. Christiansen, K., Bonven, B. J., and Westergaard, O. (1987) J. Mol. Biol. 193, 517-525.
48. Busk, H., Thomsen, B., Bonven, B. J., Kjeldsen, E., Nielsen, O. F., and Westergaard, O. (1987) Nature 327, 638-640.
49. Christiansen, K., and Westergaard, O. (1994) J. Biol. Chem. 269, 721-729.