ATP-independent DNA unwinding by the adenovirus single-stranded DNA binding protein requires a flexible DNA binding loop

Journal of Molecular Biology

Volumn 277, Issue 4, 1998, Pages 825-838

  Dekker, Job ^a   Kanellopoulos, Panagiotis N ^b   Van Oosterhout, Joost A W M ^a   Stier, Gunter ^c   Tucker, Paul A ^b,c   Van Der Vliet, Peter C ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Adenovirus; DNA replication; DNA unwinding; Helix destabilizing proteins; Surface plasmon resonance

Indexed keywords

ADENOSINE TRIPHOSPHATE; SINGLE STRANDED DNA BINDING PROTEIN;

ADENOVIRUS; ARTICLE; CARBOXY TERMINAL SEQUENCE; DELETION MUTANT; DNA DENATURATION; DNA REPLICATION; GENETIC CONSERVATION; NONHUMAN; PRIORITY JOURNAL;

EID: 0032502813     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1652     Document Type: Article

References (43)

1. Altschuh D., Dubs M.-C., Weiss E., Zeder-Lutz G., van Regenmortel M.H.V. Determination of kinetic constants for the interaction between a monoclonal antibody and peptides using surface plasmon resonance. Biochemistry. 31:1992;6298-6304
2. Anderson C.W., Hardy M.M., Dunn J.J., Klessig D.F. Independent, spontaneous mutants of adenovirus type 2-simian virus 40 hybrid Ad2 + ND3 that grow efficiently in monkey cells possess identical mutations in the adenovirus type 2 DNA-binding protein gene. J. Virol. 48:1983;31-39
3. Ariga H., Klein H., Levine A.J., Horwitz M.S. A cleavage product of the adenovirus DNA binding protein is active in DNA replication in vitro. Virology. 101:1980;307-310
4. Bosher J., Robinson E.C., Hay R.T. Interactions between the adenovirus type 2 DNA polymerase and the DNA binding domain of nuclear factor I. New. Biol. 2:1990;1083-1090
5. Chen M., Mermod N., Horwitz M.S. Protein-protein interactions between adenovirus DNA polymerase and nuclear factor I mediate formation of the DNA replication preinitiation complex. J. Biol. Chem. 265:(30):1990;18634-18642
6. Cleat P.H., Hay R.T. Co-operative interactions between NFI and the adenovirus DNA binding protein at the origin of replication. EMBO J. 8:1989;1841-1848
7. Cleghon V., Klessig D.F. Characterization of the nucleic acid binding region of adenovirus DNA binding protein by partial proteolysis and photochemical cross-linking. J. Biol. Chem. 267:1992;17872-17881
8. Cleghon V., Voelkerding K., Morin N., Delsert C., Klessig D.F. Isolation and characterization of a viable adenovirus mutant defective in nuclear transport of the DNA-binding protein. J. Virol. 63:1989;2289-2299
9. Coenjaerts F.E.J., van Oosterhout J.A.W.M., van der Vliet P.C. The Oct-1 POU domain stimulates adenovirus DNA replication by a direct interaction between the viral precursor terminal protein-DNA polymerase complex and the POU homeo domain. EMBO J. 13:1994;5401-5409
10. Dekker J., Coenjaerts F.E.J., van der Vliet P.C. Reconstitution of adenovirus DNA replication with purified replication proteins. Adolph K.W. Viral Genome Methods. 1996;269-282 CRC Press, Boca Raton
11. Dekker J., Kanellopoulos P.N., Loonstra A.K., van Oosterhout J.A.W.M., Leonard K., Tucker P.A., van der Vliet P.C. Multimerization of the adenovirus DNA-binding protein is the driving force for ATP-independent DNA unwinding during strand displacement synthesis. EMBO J. 16:1997;1455-1463
12. Friefeld B.R., Krevolin M.D., Horwitz M.S. Effects of the adenovirus H5ts125 and H5ts107 DNA binding proteins on DNA replication in vitro. Virology. 124:1983;380-389
13. Georgaki A., Strack B., Podust V., Hübscher U. DNA unwinding activity of replication protein A. FEBS Letters. 308:1992;240-244
14. Ginsberg H.S., Ensinger M.J., Kauffman R.S., Mayer A.J., Lundholm U. Cell transformation a study of regulation with type 5 and adenovirus temperature sensitive mutants. Cold Spring Harbor Symp. Quant. Biol. 39:1974;419-426
15. Hay R.T. The origin of adenovirus DNA replication minimal DNA sequence requirements in vivo. EMBO J. 4:1985;421-426
16. Hay R.T. Adenovirus DNA replication. DePamphilis M. Replication in Eukaryotic Cells. 1996;699-719 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, USA
17. Hay R.T., Freeman A., Leith I., Monaghan A., Webster A. Molecular interactions during adenovirus DNA replication. Doerfler W., Böhm P. The Molecular Repertoire of Adenoviruses II. 1995;31-48 Springer, Berlin
18. Kanellopoulos P.N., van der Zandt H., Tsernoglou D., van der Vliet P.C., Tucker P.A. Crystallization and preliminary X-ray crystallographic studies on the adenovirus ssDNA binding protein in complex with ssDNA. J. Struct. Biol. 115:1995;113-116
19. Kanellopoulos P.N., Tsernoglou D., van der Vliet P.C., Tucker P.A. Alternative arrangements of the protein chain are possible for the adenovirus single-stranded DNA binding protein. J. Mol. Biol. 257:1996;1-8
20. King A.J., van der Vliet P.C. A precursor terminal protein-trinucleotide intermediate during initiation of adenovirus DNA replication regeneration of molecular ends in vitro by a jumping back mechanism. EMBO J. 13:1994;5786-5792
21. King A.J., Teertstra W.R., van der Vliet P.C. Dissociation of the protein primer and the DNA polymerase after initiation of adenovirus DNA replication. J. Biol. Chem. 272:1997;24617-24623
22. Kitchingman G.R. Mutations in the adenovirus encoded single-stranded DNA Binding Protein that result in altered accumulation of early and late viral RNAs. Virology. 212:1995;91-101
23. van Leeuwen H.C., Rensen M., van der Vliet P.C. The Oct-1 POU homeodomain stabilizes the adenovirus pre-initiation complex via a direct interaction with the priming protein and is displaced when the replication fork passes. J. Biol. Chem. 272:1997;3398-3405
24. Lindenbaum J.O., Field J., Hurwitz J. The adenovirus DNA binding protein and adenovirus DNA polymerase interact to catalyze elongation of primed DNA templates. J. Biol. Chem. 261:1986;10218-10227
25. Luckow V.A., Summers M.D. Trends in the development of baculovirus expression vectors. Biotechnology. 6:1988;47-55
26. Malmborg A.C., Johansson K., Sigvardsson M., Borrebaeck C.A., Leanderson T. Real-time analysis of Oct protein-octamer interaction and transcription complex assembly. Mol. Immunol. 32:1995;1429-1442
27. Monaghan A., Webster A., Hay R.T. Adenovirus DNA binding protein helix destabilising properties. Nucl. Acids Res. 22:1994;742-748
28. Mul Y.M., van der Vliet P.C. The adenovirus DNA binding protein effects the kinetics of DNA replication by a mechanism distinct from NFI or Oct-1. Nucl. Acids Res. 21:1993;641-647
29. Myszka D.G. Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors. Curr. Opin. Biotechnol. 8:1997;50-57
30. Neale G.A., Kitchingman G.R. Biochemical analysis of adenovirus type 5 DNA-binding protein mutants. J. Biol. Chem. 264:1989;3153-3159
31. Neale G.A.M., Kitchingman G.R. Conserved region 3 of the adenovirus type 5 DNA Binding Protein is important for interaction with single-stranded DNA. J. Virol. 64:1990;630-638
32. Nicolas J., Sarnow P., Girard M., Levine A.J. Host range, temperature-conditional mutants in the adenovirus DNA-binding protein are defective in the assembly of infectious virus. J. Virol. 126:1983;228-239
33. O'Reilly D.R., Miller L.K., Luckow V.A. Baculovirus Expression Vectors, A Laboratory Manual. 1992;Freeman, New York
34. O'Shannessy D.J., Brigham-Burke M., Soneson K.K., Hensley P., Brooks I. Determination of rate and equilibrium binding constants for macromolecular interactions using surface plasmon resonance use of nonlinear least squares analysis methods. Anal. Biochem. 212:1993;457-468
35. Paal K., Baeuerle P.A., Schmitz L. Basal transcription factors TBP and TFIIB and the viral coactivator E1A 13 S bind with distinct affinities and kinetics to the transactivation domain of NF-KB p65. Nucl. Acids Res. 25:1997;1050-1055
36. Prelich G., Stillman B.W. Functional characterization of thermolabile DNA-binding proteins that affect adenovirus DNA-replication. J. Virol. 57:1986;883-892
37. Stuiver M.H., van der Vliet P.C. Adenovirus DNA-binding protein forms a multimeric protein complex with double-stranded DNA and enhances binding of nuclear factor I. J. Virol. 64:1990;379-386
38. Tsernoglou D., Tsugita A., Tucker A.D., van der Vliet P.C. Characterization of the chymotryptic core of the adenovirus DNA-binding protein. FEBS Letters. 188:1985;248-252
39. Tsuji M., van der Vliet P.C., Kitchingman G.R. Temperature-sensitive mutants of adenovirus single-stranded DNA-binding protein. J. Biol. Chem. 266:1991;16178-16187
40. Tucker P.A., Tsernoglou D., Tucker A.D., Coenjaerts F.E.J., Leenders H., van der Vliet P.C. Crystal structure of the adenovirus DNA binding protein reveals a hook-on model for cooperative DNA binding. EMBO J. 13:(13):1994;2994-3002
41. van der Vliet P.C. Adenovirus DNA replication. Doerfler W., Böhm P. The Molecular Repertoire of Adenoviruses II. 1995;1-30 Springer, Berlin
42. Zijderveld D.C., van der Vliet P.C. Helix-destabilizing properties of the adenovirus DNA-binding protein. J. Virol. 68:1994;1158-1164
43. Zijderveld D.C., d'Adda di Fagagna F., Giacca M., Timmers H.T.M., van der Vliet P.C. Stimulation of the adenovirus major late promoter in vitro by transcription factor USF is enhanced by the adenovirus DNA binding protein. J. Virol. 68:1994;8288-8295