Thermodynamics of ligand binding and catalysis in human liver medium- chain acyl-CoA dehydrogenase: Comparative studies involving normal and 3'- dephosphorylated C8-CoAs and wild-type and Asn 191 → Ala (N191A) mutant enzymes

Biochemistry

Volumn 37, Issue 36, 1998, Pages 12659-12671

  Peterson, Kevin L ^a   Peterson, Karen M ^a   Srivastava, D K ^a  

^a NORTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A DEHYDROGENASE;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CATALYSIS; ENTHALPY; ENZYME PHOSPHORYLATION; ENZYME STABILITY; ENZYME SUBSTRATE; HYDROGEN BOND; LIGAND BINDING; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; THERMODYNAMICS; X RAY CRYSTALLOGRAPHY;

ACYL COENZYME A; ACYL-COA DEHYDROGENASE; ACYL-COA DEHYDROGENASES; ALANINE; ANIMALS; ASPARAGINE; BINDING SITES; CALORIMETRY; CATALYSIS; HUMANS; KINETICS; LIGANDS; LIVER; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; OXIDATION-REDUCTION; PHOSPHATES; PHOSPHORYLATION; SOLVENTS; SUBSTRATE SPECIFICITY; SURFACE PROPERTIES; SWINE; TEMPERATURE; THERMODYNAMICS;

ANIMALIA; SUS SCROFA;

EID: 0032497365     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980949m     Document Type: Article

References (56)

1. Srivastava, D. K., Kumar, N. R., and Peterson, K. L. (1995) Biochemistry 34, 4625-4632.
2. Kim, J.-J. P., Wang, M., and Paschke, R. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 7523-7527.
3. Kelly, D. P., Kim, J.-J. P., Billadello, J. J., Hainline, B. E., Chu, T. W., and Strauss, A. W. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 4068-4072.
4. Lee, H.-J. K., Wang, M., Paschke, R., Nandy, A., Ghisla, S., and Kim, J.-J. P. (1996) Biochemistry 35, 12412-12420.
5. Kumar, N. R., and Srivastava, D. K. (1994) Biochemistry 33, 8833-8841.
6. Kumar, N. R., and Srivastava, D. K. (1995) Biochemistry 34, 9434-9443.
7. Peterson, K. L., Sergienko, E. E., Wu, Y., Kumar, N. R., Strauss, A. W., Oleson, A. E., Muhonen, W. W., Shabb, J. B., and Srivastava, D. K. (1995) Biochemistry 34, 14942-14953.
8. Peterson, K. L., and Srivastava, D. K. (1997) Biochem. J. 325, 751-760.
9. Kumar, N. R., Peterson, K. L., and Srivastava, D. K. (1996) Flavin and Flavoproteins (Stevenson, K. J., Massey, V., and Williams, C. W., Eds.) pp 633-636, University of Calgary Press, Calgary, Canada.
10. Johnson, J. K., and Srivastava, D. K. (1993) Biochemistry 32, 8004-8013.
11. Johnson, J. K., Kumar, N. R., and Srivastava, D. K., (1994) Biochemistry 33, 4738-4744.
12. Schopfer, L. M., Massey, V., Ghisla, S., and Thorpe, C. (1988) Biochemistry 27, 6599-6611.
13. Srivastava, D. K., Wang, S., and Peterson, K. L. (1997) Biochemistry 36, 6359-6366.
14. Qin, L., and Srivastava, D. K. (1998) Biochemistry 37, 3499-3508.
15. Johnson, J. K. (1994) Ph.D. Dissertation, North Dakota State University, Fargo, ND.
16. Johnson, J. K., Wang, Z. X., and Srivastava, D. K. (1992) Biochemistry 31, 10564-10575.
17. Johnson, J. K., Kumar, N. R., and Srivastava, D. K. (1993) Biochemistry 32, 11575-11585.
18. Srivastava, D. K., Johnson, J. K., Kumar, N. R., and Peterson, K. L. (1996) Flavins and Flavoproteins (Stevensen, K. J., Massey, V., and Williams, C. W., Eds.) pp 641-644, University of Calgary Press, Calgary, Canada.
19. Peterson, K. L., Galitz, D. S., and Srivastava, D. K. (1998) Biochemistry 37, 1697-1705.
20. Lehman, T. C., Hale, D. E., Bhala, A., and Thorpe, C. (1990) Anal. Biochem. 186, 280-284.
21. Thorpe, C., Matthews, R. G., and Williams, C. W., Jr. (1979) Biochemistry 18, 331-337.
22. Bernert, J. T., and Sprecher, H. (1977) J. Biol. Chem. 252, 6737-6744.
23. Wiseman, T., Williston, S., Brandt, J. F., and Lin, L.-N. (1989) Anal. Biochem. 17, 131-137.
24. Lee, B., and Richards, F. M. (1971) J. Mol. Biol. 55, 379-400.
25. Srivastava, D. K., and Peterson, D. K. (1998) Biochemistry 37, 8446-8456.
26. Edsall, J. T. (1935) J. Am. Chem. Soc. 57, 1506-1507.
27. Tanford, C. (1980) The Hydrophobic Effect, 2nd ed., Wiley. New York.
28. Baldwin, R. L. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 8069-8072.
29. Spolar, R. S., Ha, J.-H., and Record, M. T., Jr. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 8382-8385.
30. Privalov, P. L. (1979) Adv. Protein Chem. 33, 167-241.
31. Murphy, K. P., Privalov, P. L., and Gill, S. J. (1989) Science 247, 559-561.
32. Hackney, D. D. (1990) in The Enzymes (Sigman, D. S., and Boyer, P. D., Eds.) 3rd ed., Vol. 19, pp 1-36, Academic Press, San Diego, CA.
33. Burbaum, J. J., Raines, R. T., Albery, W. J., and Knowles, J. R. (1989) Biochemistry 28, 9293-9305.
34. Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Biochemistry 31, 3947-3955.
35. Murphy, K. P., Xie, D., Garcia, K. C., Amzel, L. M., and Freire, E. (1993) Proteins 15, 113-120.
36. Makhatadze, G. I., and Privalov, P. L. (1990) J. Mol. Biol. 213, 375-384.
37. Makhatadze, G. I., and Privalov, P. L. (1993) J. Mol. Biol. 232, 639-659.
38. Pauling, L. (1945) The Nature of the Chemical Bond, Cornell University Press, New York.
39. Jeffrey, G. A. (1992) Adv. Enzymol. Relat. Areas Mol. Biol. 65, 217-254.
40. Fersht, A. (1985) Enzyme Structure and Mechanism, Freeman and Co., New York.
41. Jencks, W. P. (1987) Catalysis in Chemistry and Enzymology, Dover Publications, Inc., New York.
42. Connolly, M. L. (1983) Science 221, 709-713.
43. Kieweg, V., Krautle, F.-G., Nandy, A., Engst, S., Vock, P., Abdel-Ghany, A.-G., Bross, P., Gregersen, N., Rasched, I., Strauss, A., and Ghisla, S. (1997) Eur. J. Biochem. 246, 548-556.
44. Macheroux, P., Sanner, C., Buttner, H., Kieweg, V., Ruterjans, H., and Ghisla, S. (1997) J. Biol. Chem. 378, 1381-1385.
45. Holdgate, G. A., Tunnicliffe, A., Ward, W. H. J., Weston, S. A., Rosenbrock, G., Barth, P. T., Taylor, I. W. F., Pauptit, R. A., and Timms, D. (1997) Biochemistry 36, 9663-9673.
46. Rowe, E. S., Zhang, F., Leung, T. W., Parr, J. S., and Guy, P. T. (1998) Biochemistry 37, 2430-2440.
47. Raman, C. S., Allen, M. J., and Nall, B. T. (1995) Biochemistry 34, 5831-5838.
48. Ladbury, J. E., Wright, J. G., Sturtevant, J. M., and Sigler, P. B. (1994) J. Mol. Biol. 238, 669-681.
49. Bhatnagar, R. S., Jackson-Machelski, E., McWherter, C. A., and Gordon, J. L. (1994) J. Biol. Chem. 269, 11045-11053.
50. Sturtevant, J. M. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 2236-2240.
51. Frerman, F. E., Miziorko, H. M., and Beckman, J. D. (1980) J. Biol. Chem. 255, 11192-11198.
52. Engel, P. C. (1990) in Chemistry and Biochemistry of Flavoenzymes (Muller, F., Ed.) Vol. 3, pp 597-655, CRC Press, Boca Raton, FL.
53. Spolar, R. S., and Record, T., Jr. (1994) Science 263, 777-784.
54. Murphy, K. P., and Freire, E. (1992) Adv. Protein Chem. 43, 313-361.
55. Faergeman, N. J., Sigurskjold, B. W., Kragelund, B. B., Andersen, K. V., and Knudsen, J. (1996) Biochemistry 35, 14118-14126.
56. Fersht, A. R. (1987) Trends Biochem. Sci. 12, 301-304.