Structural and functional analysis of the homing endonuclease PI-SceI by limited proteolytic cleavage and molecular cloning of partial digestion products

Biochemistry

Volumn 37, Issue 22, 1998, Pages 8233-8243

  Pingoud, Vera ^a   Grindl, Wolfgang ^a   Wende, Wolfgang ^a   Thole, Hubert ^b   Pingoud, Alfred ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b HANNOVER MEDICAL SCHOOL   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; ENDONUCLEASE;

AMINO TERMINAL SEQUENCE; ARTICLE; DNA CLEAVAGE; ENZYME DEGRADATION; ESCHERICHIA COLI; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHYMOTRYPSIN; CIRCULAR DICHROISM; CLONING, MOLECULAR; DNA, FUNGAL; ENDODEOXYRIBONUCLEASES; ENDOPEPTIDASE K; HYDROLYSIS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PEPTIDE FRAGMENTS; PROTEIN BINDING; PROTEIN ENGINEERING; PROTON-TRANSLOCATING ATPASES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; STRUCTURE-ACTIVITY RELATIONSHIP; SUBTILISINS; TRYPSIN;

EID: 0032474458     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980013d     Document Type: Article

References (40)

1. Belfort, M., and Perlman, P. S. (1995) J. Biol. Chem. 270, 30237-30240.
2. Cooper, A. A., and Stevens, T. H. (1995) Trends Biochem. Sci. 20, 351-356.
3. Curcio, M. J., and Belfort, M. (1996) Cell 84, 9-12.
4. Lambowitz, A. M., and Belfort, M. (1993) Annu. Rev. Biochem. 62, 587-622.
5. Mueller, J. E., Bryk, M., Loizos, N., and Belfort, M. (1993) in Nucleases (Linn, S. M., Lloyd, R. S., and Roberts, R. J., Eds.) pp 111-143, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
6. Perler, F. B., Davis, E. O., Dean, G. E., Gimble, F. S., Jack, W. E., Neff, N., Noren, C. J., Thorner, J., and Belfort, M. (1994) Nucleic Acids Res. 22, 1125-1127.
7. Belfort, M., and Roberts, R. (1997) Nucleic Acids Res. 25, 3379-3388.
8. Hirata, R., Ohsumk, Y., Nakano, A., Kawasaki, H., Suzuki, K., and Anraku, Y. (1990) J. Biol. Chem. 265, 6726-6733.
9. Kane, P. M., Yamashiro, C. T., Wolczyk, D. F., Neff, N., Goebl, N., and Stevens, T. H. (1990) Science 250, 651-657.
10. Gimble, F. S., and Thorner, J. (1992) Nature 357, 301-306.
11. Gimble, F. S., and Thorner, J. (1993) J. Biol. Chem. 268, 21844-21853.
12. Gimble, F. S., and Stephens, B. W. (1995) J. Biol. Chem. 270, 5849-5856.
13. Wende, W., Grindl, W., Christ, F., Pingoud, A., and Pingoud, V. (1996) Nucleic Acids Res. 24, 4123-4132.
14. Gimble, F. S., and Wang, J. (1996) J. Mol. Biol. 263, 163-180.
15. Chong, S., Shao, Y., Paulus, H., Benner, J., Perler, F. B., and Xu, M.-Q. (1996) J. Biol. Chem. 271, 22159-22168.
16. Xu, M. Q., and Perler, F. (1996) EMBO J. 15, 5146-5153.
17. Kawasaki, M., Nogami, S., Satow, Y., Ohya, Y., and Anraku, Y. (1997) J. Biol. Chem. 272, 15668-15674.
18. Chong, S., and Xu, M.-Q. (1997) J. Biol. Chem. 272, 15587-15590.
19. Derbyshire, V., Wood, D. W., Wu, W., Dansereau, J. T., Dalgaard, J. Z., and Belfort, M. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 11466-11471.
20. Duan, X., Gimble, F. S., and Quiocho, F. A. (1997) Cell 89, 555-564.
21. Pace, C. N., Vajdos, F., Fee, L., Grimslay, G., and Gray, T. (1995) Protein Sci. 4, 2411-2423.
22. Laemmli, U. K. (1970) Nature 227, 680-685.
23. Blum, H., Beier, H., and Gross, H. J. (1987) Electrophoresis 8, 93-99.
24. Kim, J., Zwieb, C., Wu, C., and Adhya, S. (1989) Gene 85, 15-23.
25. Zinkel, S. S., and Crothers, D. M. (1990) Biopolymers 29, 29-38.
26. Li, L., and Chandrasagaran, S. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2764-2768.
27. Kim, S. C., Skowron, P. M., and Scybalski, W. (1996) J. Mol. Biol. 258, 638-649.
28. Perrin, A., Buckle, M., and Dujon, B. (1993) EMBO J. 12, 2939-2947.
29. Aagaard, C., Awayez, M. J., and Garrett, R. (1997) Nucleic Acids Res. 25, 1523-1530.
30. Wang, J., Kim, H.-H., Yuan, X., and Herrin, D. L. (1997) Nucleic Acids Res. 25, 3767-3776.
31. Loizos, N., Silva, G. H., and Belfort, M. (1996) J. Mol. Biol. 255, 412-424.
32. Lykke-Andersen, J., Thi-Ngoc, H. P., and Garrett, R. A. (1994) Nucleic Acids Res. 22, 4583-4590.
33. Wittmayer, P. K., and Raines, R. T. (1996) Biochemistry 35, 1076-1083.
34. Mueller, J. E., Smith, D., and Belfort, M. (1996) Genes Dev. 10, 2158-2166.
35. Mueller, J. E., Smith, D., Bryk, M., and Belfort, M. (1995) EMBO J. 14, 5724-5735.
36. Turmel, M., Mercier, J.-P., Cote, V., Otis, C., and Lemieux, C. (1995) Nucleic Acids Res. 23, 2519-2525.
37. Grindl, W., Wende, W., Pingoud, V., and Pingoud, A. (1998) Nucleic Acids Res. 26, 1857-1862.
38. Derbyshire, V., Kowalski, J. C., Dansereau, J. T., Hauer, C. R., and Belfort, M. (1997) J. Mol. Biol. 265, 494-506.
39. Heath, P. J., Stephens, K. M., Monnat, R. J., and Stoddard, B. L. (1997) Nat. Struct. Biol. 4, 468-476.
40. Dalgaard, J. Z., Klar, A. J., Moser, M. J., Holley, W. R., Chatterjeee, A., and Mian, I. S. (1997) Nucleic Acids Res. 25, 4626-4638.