Facts about the artifacts in the measurement of oxidative DNA base damage by gas chromatography-mass spectrometry

Free Radical Research

Volumn 29, Issue 6, 1998, Pages 551-563

  Dizdaroglu, Miral ^a  

^a NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

Author keywords

5 hydroxycytosine; 8 hydroxyguanine; Derivatization; DNA repair; Formamidopyrimidines; Gas chromatography mass spectometry

Indexed keywords

5 HYDROXYMETHYLURACIL; 8 HYDROXYGUANINE; ADENINE DERIVATIVE; CYTOSINE DERIVATIVE; DNA BASE; FORMIC ACID; PYRIMIDINE DERIVATIVE; URACIL DERIVATIVE;

ACCURACY; ANIMAL TISSUE; ARTICLE; ARTIFACT; DNA DAMAGE; DNA DETERMINATION; DNA PURIFICATION; DNA STRUCTURE; GAS CHROMATOGRAPHY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HYDROLYSIS; MASS SPECTROMETRY; NONHUMAN;

ANIMALIA;

EID: 0032453867     PISSN: 10715762     EISSN: None     Source Type: Journal    
DOI: 10.1080/10715769800300591     Document Type: Article

References (62)

1. Halliwell, B. and Gutteridge, J.M.C. (1990) Role of free radicals and catalytic metal ions in human disease: an overview. Methods in Enzymology 186, 1-85.
2. Teoule, R. (1987) Radiation-induced DNA damage and its repair. International Journal of Radiation Biology 51, 573-589.
3. Von Sonntag, C. (1987) The Chemical Basis of Radiation Biology (New York: Taylor & Francis), pp. 117-166, 221-294.
4. Dizdaroglu, M. (1992) Oxidative damage to DNA in mammalian chromatin, Mutation Research 275, 331-342.
5. Breen, A.P. and Murphy, J.A. (1995) Reactions of oxyl radicals with DNA. Free Radical Biology & Medicine 18, 1033-1077.
6. Beckman, K.B. and Ames, B.N. (1997) The Journal of Biological Chemistry 272, 19633-19636.
7. Collins, A., Cadet, J., Epe, B. and Gedik, C. (1997) Problems in the measurement of 8-oxoguanine in human DNA. Report of a workshop, DNA Oxidation, held in Aberdeen, UK, 19-21 January 1997. Carcinogenesis 18, 1833-1836.
8. Podmore, I.D., Griffiths, H.R., Herbert, K.E., Mistry, N., Mistry, P. and Lunec, J. (1998) Vitamin C exhibits both a pro-oxidant and antioxidant behavior in vivo. Nature 392, 559.
9. [8a] Rehman, A., Collis, C.S., Yang, M., Kelly, M., Diplock, A.T., Halliwell, B. and Rice-Evans, C. (1998) The effects of iron and vitamin C co-supplementation on oxidative damage to DNA in healthy volunteers. Biochemical Biophysical Research Communications 246, 293-298.
10. Dizdaroglu, M. (1984) The use of capillary gas chromatography-mass spectrometry for identification of radiation-induced DNA base damage and DNA base-amino acid cross-links. Journal of Chromatography 295, 103-121.
11. Dizdaroglu, M. (1985) Application of capillary gas chromatography-mass spectrometry to chemical characterization of radiation-induced base damage in DNA: implications for assessing DNA repair processes. Analytical Biochemistry 144, 593-603.
12. Dizdaroglu, M. (1991) Chemical determination of free radical-induced damage to DNA. Free Radical Biology & Medicine 10, 225-242.
13. Dizdaroglu, M. (1994) Chemical determination of oxidative DNA damage by gas chromatography-mass spectrometry. Methods in Enzymology 234, 3-16.
14. Schram, K. (1990) Preparation of trimethylsilyl derivatives of nucleic acid components for analysis by mass spectrometry. Methods in Enzymology 193, 791-796.
15. Watson, J.T. (1990) Selected-ion measurements. Methods in Enzymology 193, 86-106.
16. Dizdaroglu, M. (1993) Quantitative determination of oxidative base damage in DNA by stable isotope-dilution mass spectrometry. FEBS Letters 315, 1-6.
17. Hamberg, M. and Zhang, L.-Y. (1995) Quantitative determination of 8-hydroxyguanine and guanine by isotope dilution mass spectrometry. Analytical Biochemistry 229, 336-344.
18. Ravanat, J.-L., Turesky, R.J., Gremaud, E., Trudel, L.J. and Stadler, R.H. (1995) Determination of 8-oxoguanine in DNA by gas chromatography-mass spectrometry and HPLC-electrochemical detection: overestimation of the background level of the oxidized base by the gas chromatography-mass spectrometry assay. Chemical Research in Toxicology 8, 1039-1045.
19. Douki, T., Delatour, F., Bianchini, F. and Cadet, J. (1996) Observation and prevention of an artifactual formation of oxidized DNA bases and nucleosides in the GC-EIMS method. Carcinogenesis 17, 347-353.
20. Cadet, J., Douki, T. and Ravanat, J.-L. (1997) Artifacts associated with the measurement of oxidized DNA bases. Environmental Health Perspectives 105, 1034-1039.
21. England, T.G., Jenner, A., Aruoma, O.I. and Halliwell, B. (1998) Determination of oxidative DNA base damage by gas chromatography-mass spectrometry. Effect of derivatization conditions on artifactual formation of certain base oxidation products. Free Radical Research (in press).
22. Halliwell, B. and Dizdaroglu, M. (1992) Commentary: The measurement of oxidative damage to DNA by HPLC and GC/MS techniques. Free Radical Research Communications 16, 75-87.
23. Malins, D.C. and Haimanot, R. (1990) 4,6-Diamino5-formamidopyrimidine, 8-hydroxyguanine and 8-hydroxyadenine in DNA from neoplastic liver of English sole exposed to carcinogens. Biochemical Biophysical Research Communications 173, 614-619.
24. Malins, D.C. and Haimanot, R. (1991) The etiology of cancer: hydroxyl radical-induced DNA lesions in histologically normal livers of fish from a population with liver tumors. Aquatic Toxicology 20, 123-130.
25. Dizdaroglu, M., Nackerdien, Z., Chao, B.-C., Gajewski, E. and Rao, G. (1991) Chemical nature of in vivo DNA base damage in hydrogen peroxide-treated mammalian cells. Archives of Biochemistry and Biophysics 285, 388-390.
26. Nackerdien, Z., Kasprzak, K.S., Rao, G., Halliwell, B. and Dizdaroglu, M. (1991) Nickel(II)- and cobalt(II)-dependent damage by hydrogen peroxide to the DNA bases in isolated human chromatin. Cancer Research 51, 5837-5842.
27. Olinski, R., Zastawny, T.H., Budzbon, J., Skokowski, J., Zegarski, W. and Dizdaroglu, M. (1992) DNA base modifications in chromatin of human cancerous tissues. FEBS Letters 309, 193-198.
28. Kasprzak, K.S., Diwan, B.A., Rice, J.M., Misra, M., Olinski, R. and Dizdaroglu, M. (1992) Nickel(II)-mediated oxidative DNA base damage in rat renal chromatin in vivo. Possible relevance to nickel(II) carcinogenesis. Chemical Research in Toxicology 5, 809-815.
29. Mori, T., Hori, Y. and Dizdaroglu, M. (1993) DNA base damage generated in vivo in hepatic chromatin of mice upon whole body γ-irradiation. International Journal of Radiation Biology 64, 645-650.
30. Malins, D.C. and Gunselman, S.J. (1994) Fourier transform infrared spectroscopy and gas chromatography mass spectrometry reveal a remarkable degree of structural damage in the DNA of wild fish exposed to toxic chemicals. Proceedings of the National Academy of Sciences USA 91, 13038-13041.
31. Toyokuni, S., Mori, T. and Dizdaroglu, M. (1994) DNA base modifications in renal chromatin of wistar rats treated with a renal carcinogen, ferric nitrilotriacetate. International Journal of Cancer 57, 123-128.
32. Mori, T. and Dizdaroglu, M. (1994) Ionizing radiation causes greater DNA base damage in radiation-sensitive mutant M10 cells than in parent mouse lymphoma L5 178Y cells. Radiation Research 140, 85-90.
33. Olinski, R., Zastawny, T.H., Foksinski, M., Barecki, A. and Dizdaroglu, M. (1995) DNA base modifications and antioxidant enzyme activities in human benign prostatic hyperplasia. Free Radical Biology & Medicine 18, 807-813.
34. Jaruga, P. and Dizdaroglu, M. (1996) Repair of products of oxidative DNA base damage in human cells. Nucleic Acids Research 24, 1389-1394.
35. Liu, P.K., Hsu, C.Y., Dizdaroglu, M., Floyd, R.A., Kow, Y.W., Karakaya, A., Rabow, L. and Cui, J.-K. (1996) Damage, repair and mutagenesis in nuclear genes of the brain after forebrain ischemia and reperfusion. Journal of Neuroscience 16, 6795-6806.
36. Kasprzak, K.S., Jaruga, P., Zastawny, T.H., North, S.L., Riggs, C.W., Olinski, R. and Dizdaroglu, M. (1997) Oxidative DNA base damage and its repair in kidneys and livers of nickel(II)-treated male F344 rats. Carcinogenesis 18, 271-277.
37. Finnegan, M.T., Herbert, K.E., Evans, M.D., Farooq, S., Farmer, P., Podmore, I.D. and Lunec, J. (1995) Development of an assay to measure 8-oxoguanine using HPLC with electrochemical detection. Biochemical Society Transactions 23, 431S.
38. Herbert, K.E., Evans, M.D., Finnegan, M.T., Farooq, S., Mistry, N., Podmore, I.D., Farmer, P. and Lunec, J. (1996) A novel HPLC procedure for the analysis of 8-oxoguanine in DNA. Free Radical Biology & Medicine 20, 467-473.
39. Kaur, H. and Halliwell, B. (1996) Measurement of oxidized and methylated DNA bases by HPLC with electrochemical detection, Biochemical Journal 318, 21-23.
40. Blakely, W.F., Fuciarelli, A.F., Wegher, P.J. and Dizdaroglu, M. (1990) Hydrogen peroxide-induced base damage in deoxyribonucleic acid. International Journal of Radiation Biology 121, 338-343.
41. Douki, T., Martini, R., Ravanat, J.-L., Turesky, R.J. and Cadet, J. (1997) Measurement of 2,6-diamino-4-hydroxy-5-formamidopyrimidine and 8-oxo-7,8-dihydroguanine in isolated DNA exposed to gamma radiation in aqueous solution. Carcinogencsis 18, 2385-2391.
42. Fuciarelli, A.F., Wegher, B.J., Blakely, W.F. and Dizdaroglu, M. (1990) Yields of radiation-induced base products in DNA: effects of DNA conformation and gassing conditions. International Journal of Radiation Biology 58, 397-415.
43. Gajewski, E., Rao, G., Nackerdien, Z. and Dizdaroglu, M. (1990) Modification of DNA bases in mammalian chromatin by radiation-generated free radicals. Biochemistry 29, 7876-7882.
44. Nackerdien, Z., Olinski, R. and Dizdaroglu, M. (1992) DNA base damage in chromatin of γ-irradiated cultured human cells. Free Radical Research Communications 16, 259-272.
45. Spencer, J.P.E., Jenner, A., Aruoma, O.I., Cross, C.E., Wu, R. and Halliwell, B. (1996) Oxidative DNA damage in human respiratory tract epithelial cells. Time course in relation to DNA strand breakage. Biochemical Biophysical Research Communications 224, 17-22.
46. Abalea, V., Cillard, J., Dubos, M.-P., Anger, J.-P., Cillard, P. and Morel, I. (1998) Iron-induced oxidative DNA damage and its repair in primary rat hepatocyte culture. Carcinogencsis 19, 1053-1059.
47. Misra, M., Olinski, R., Dizdaroglu, M. and Kasprzak, K.S. (1993) Enhancement by L-histidine of Nickel(II)-induced DNA-protein cross-linking and oxidative DNA base damage in the rat kidney. Chemical Research in Toxicology 6, 33-37.
48. Dizdaroglu, M., Olinski, R., Doroshow, J.H. and Akman, S.A. (1993) Modification of DNA bases in chromatin of intact target human cells by activated human polymorphonuclear leukocytes. Cancer Research 53, 1269-1272.
49. Kasprzak, K.S., Zastawny, T.H., North, S.L., Riggs, C.W., Diwan, B.A., Rice, J.M. and Dizdaroglu, M. (1994) Oxidative DNA base damage in renal, hepatic, and pulmonary chromatin of rats after intraperitoneal injection of cobalt(II) acetate. Chemical Research in Toxicology 7, 329-335.
50. Altman, S.A., Zastawny, T.H., Randers, L., Remade, J., Dizdaroglu, M. and Rao, G. (1994) tert-Butyl hydroperoxide-mediated DNA base damage in cultured mammalian cells. Mutation Research 306, 35-44.
51. Zastawny, T.H., Altman, S.A., Randers-Eichhorn, L., Madurawe, R., Lumpkin, J.A., Dizdaroglu, M. and Rao, G. (1995) DNA base modifications and membrane damage in cultured mammalian cells treated with iron ions. Free Radical Biology & Medicine 18, 1013-1022.
52. Olinski, R., Zastawny, T.H., Foksinski, M., Windorbska, W., Jaruga, P. and Dizdaroglu, M. (1996) DNA base damage in lymphocytes of cancer patients undergoing radiation therapy. Cancer Letters 106, 207-215.
53. Boiteux, S., Gajewski, E., Laval, J. and Dizdaroglu, M. (1992) Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): excision of purine lesions in DNA produced by ionizing radiation or photosensitization. Biochemistry 31, 106-110.
54. Dizdaroglu, M., Laval, J. and Boiteux, S. (1993a) Substrate specificity of Escherichia coli endonuclease III: Excision of thymine- and cytosine-derived lesions in DNA produced by radiation-generated free radicals. Biochemistry 32, 12105-12111.
55. Zastawny, T.H., Doetsch, P.W. and Dizdaroglu (1995) A novel activity of uracil DNA N-glycosylase: excision of isodialuric acid (5,6-dihydroxyuracil) from DNA, a major product of oxidative DNA damage. FEBS Letters 364, 255-258.
56. Dizdaroglu, M., Zastawny, T.H., Carmical, J.R. and Lloyd, R.S. (1996) A novel DNA N-glycosylase activity of E. coli T4 endonuclease V that excises 4,6-diamino-5-formamidopyrimidine from DNA, a UV-radiation- and hydroxyl radical-induced product of adenine. Mutation Research 362, 1-8.
57. Dizdaroglu, M., Karakaya, A., Jaruga, P., Slupphaug, G. and Krokan, H.E. (1996) Novel activities of human uracil DNA N-glycosylase for cytosine-derived products of oxidative DNA damage. Nucleic Acids Research 24, 418-122.
58. Karakaya, A., Jaruga, P., Bohr, V.A., Grollman, A.P. and Dizdaroglu, M. (1997) Kinetics of excision of purine lesions from DNA by Fpg protein. Nucleic Acids Research 25, 474-479.
59. Deutsch, W.A., Yacoub, A., Jaruga, P., Zastawny, T.H. and Dizdaroglu, M. (1997) Characterization and mechanism of action of Drosophua ribosomal protein S3 DNA glycosylase activity for the removal of oxidatively damaged DNA bases. The Journal of Biological Chemistry 272, 32857-32860.
60. Karahalil, B., Roldán-Arjona, T. and Dizdaroglu, M. (1998) Substrate specificity of Schizosaccharomyces pombe Nth protein for products of oxidative DNA damage. Biochemistry 37, 590-595.
61. Karahalil, B., Girard, P.-M., Boiteux, S. and Dizdaroglu, M. (1998) Substrate specificity of the Ogg1 protein of Saccharomyces cerevisiae: Excision of guanine lesions produced in DNA by ionizing radiation- or hydrogen peroxyde/metal ion-generated free radicals. Nucleic Acids Research 26, 1228-1232.
62. Friedberg, E.C., Walker, G.C. and Siede, W. (1995) DNA Repair and Mutagenesis. ASM Press, Washington, DC.