-
1
-
-
0025911632
-
Interactions between immunogenic peptides and MHC proteins
-
Rothbard, J.B. & Gefter, M.L. (1991). Interactions between immunogenic peptides and MHC proteins. Annu. Rev. Immunol. 9, 527-565.
-
(1991)
Annu. Rev. Immunol.
, vol.9
, pp. 527-565
-
-
Rothbard, J.B.1
Gefter, M.L.2
-
2
-
-
0028344533
-
Structure of peptides associated with class I and class II MHC molecules
-
Engelhard, V.H. (1994). Structure of peptides associated with class I and class II MHC molecules. Annu. Rev. Immunol. 12, 181-207.
-
(1994)
Annu. Rev. Immunol.
, vol.12
, pp. 181-207
-
-
Engelhard, V.H.1
-
3
-
-
0022483534
-
The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides
-
Townsend, A.R., Rothbard, J., Gotch, F.M., Bahadur, G., Wraith, D. & McMichael, A.J. (1986). The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides. Cell 44, 959-968.
-
(1986)
Cell
, vol.44
, pp. 959-968
-
-
Townsend, A.R.1
Rothbard, J.2
Gotch, F.M.3
Bahadur, G.4
Wraith, D.5
McMichael, A.J.6
-
4
-
-
0027304399
-
Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules
-
Ruppert, J., Sidney, J., Celis, E., Kubo, R.T., Grey, H.M. & Sette, A. (1993). Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules. Cell 74, 929-937.
-
(1993)
Cell
, vol.74
, pp. 929-937
-
-
Ruppert, J.1
Sidney, J.2
Celis, E.3
Kubo, R.T.4
Grey, H.M.5
Sette, A.6
-
5
-
-
0028880698
-
Tolerance to amino acid variations in peptides binding to the major histocompatibility complex class I protein H-2Kb
-
Udaka, K., Wiesmuller, K.H., Kienle, S., Jung, G. & Walden, P. (1995). Tolerance to amino acid variations in peptides binding to the major histocompatibility complex class I protein H-2Kb. J. Biol. Chem. 270, 24130-24134.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 24130-24134
-
-
Udaka, K.1
Wiesmuller, K.H.2
Kienle, S.3
Jung, G.4
Walden, P.5
-
6
-
-
0028773294
-
Antigenic peptide binding by class I and class II histocompatibility proteins
-
Stern, L.J. & Wiley, D.C. (1994). Antigenic peptide binding by class I and class II histocompatibility proteins. Structure 2, 245-251.
-
(1994)
Structure
, vol.2
, pp. 245-251
-
-
Stern, L.J.1
Wiley, D.C.2
-
7
-
-
0028943275
-
The three-dimensional structure of peptide-MHC complexes
-
Madden, D.R. (1995). The three-dimensional structure of peptide-MHC complexes. Annu. Rev. Immunol. 13, 587-622.
-
(1995)
Annu. Rev. Immunol.
, vol.13
, pp. 587-622
-
-
Madden, D.R.1
-
8
-
-
0027525106
-
The antigenic identity of peptide-MHC complexes: A comparison of the conformations of five viral peptides presented by HLA-A2
-
Madden, D.R., Garboczi, D.N. & Wiley, D.C. (1993). The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2. Cell 75, 693-708.
-
(1993)
Cell
, vol.75
, pp. 693-708
-
-
Madden, D.R.1
Garboczi, D.N.2
Wiley, D.C.3
-
9
-
-
0026728457
-
Emerging principles for the recognition of peptide antigens by MHC class I molecules
-
Matsumura, M., Fremont, D.H., Peterson, P.A. & Wilson, I.A. (1992). Emerging principles for the recognition of peptide antigens by MHC class I molecules. Science 257, 927-934.
-
(1992)
Science
, vol.257
, pp. 927-934
-
-
Matsumura, M.1
Fremont, D.H.2
Peterson, P.A.3
Wilson, I.A.4
-
10
-
-
0026618817
-
Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle
-
Guo, H.C., Jardetzky, T.S., Garrett, T.P., Lane, W.S., Strominger, J.L. & Wiley, D.C. (1992). Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle. Nature 360, 364-366.
-
(1992)
Nature
, vol.360
, pp. 364-366
-
-
Guo, H.C.1
Jardetzky, T.S.2
Garrett, T.P.3
Lane, W.S.4
Strominger, J.L.5
Wiley, D.C.6
-
11
-
-
0027171276
-
Comparison of the P2 specificity pocket in three human histocompatibility antigens: HLA-A*6801, HLA-A*0201, and HLA-B*2705
-
Guo, H.C. et al., & Wiley, D.C. (1993). Comparison of the P2 specificity pocket in three human histocompatibility antigens: HLA-A*6801, HLA-A*0201, and HLA-B*2705. Proc. Natl Acad. Sci. USA 90, 8053-8057.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 8053-8057
-
-
Guo, H.C.1
Wiley, D.C.2
-
12
-
-
0027135804
-
Computing the structure of bound peptides. Application to antigen recognition by class I major histocompatibility complex receptors
-
Rosenfeld, R., Zheng, Q., Vajda, S. & DeLisi, C. (1993). Computing the structure of bound peptides. Application to antigen recognition by class I major histocompatibility complex receptors. J. Mol. Biol. 234, 515-521.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 515-521
-
-
Rosenfeld, R.1
Zheng, Q.2
Vajda, S.3
Delisi, C.4
-
13
-
-
0029610875
-
Flexible docking of peptides to class I major-histocompatibility-complex receptors
-
Rosenfeld, R., Zheng, Q., Vajda, S. & DeLisi, C. (1995). Flexible docking of peptides to class I major-histocompatibility-complex receptors. Genet. Anal. 12, 1-21.
-
(1995)
Genet. Anal.
, vol.12
, pp. 1-21
-
-
Rosenfeld, R.1
Zheng, Q.2
Vajda, S.3
Delisi, C.4
-
14
-
-
0031020376
-
Computation of the binding of fully flexible peptides to proteins with flexible sidechains
-
Desmet, J., Wilson, I.A., Joniau, M., De Maeyer, M. & Lasters, I. (1997). Computation of the binding of fully flexible peptides to proteins with flexible sidechains. FASEB J. 11, 164-172.
-
(1997)
FASEB J.
, vol.11
, pp. 164-172
-
-
Desmet, J.1
Wilson, I.A.2
Joniau, M.3
De Maeyer, M.4
Lasters, I.5
-
15
-
-
0029975683
-
Free energy mapping of class I MHC molecules and structural determination of bound peptides
-
Sezerman, U., Vajda, S. & DeLisi, C. (1996). Free energy mapping of class I MHC molecules and structural determination of bound peptides. Protein Sci. 5, 1272-1281.
-
(1996)
Protein Sci.
, vol.5
, pp. 1272-1281
-
-
Sezerman, U.1
Vajda, S.2
Delisi, C.3
-
16
-
-
0029018773
-
Ranking potential binding peptides to MHC molecules by a computational threading approach
-
Altuvia, Y., Schueler, O. & Margalit, H. (1995). Ranking potential binding peptides to MHC molecules by a computational threading approach. J. Mol. Biol. 249, 244-250.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 244-250
-
-
Altuvia, Y.1
Schueler, O.2
Margalit, H.3
-
17
-
-
0030292235
-
Computational determination of sidechain specificity for pockets in class I MHC molecules
-
Vasmatzis, G., Zhang, C., Cornette, J.L. & DeLisi, C. (1996). Computational determination of sidechain specificity for pockets in class I MHC molecules. Mol. Immunol. 33, 1231-1239.
-
(1996)
Mol. Immunol.
, vol.33
, pp. 1231-1239
-
-
Vasmatzis, G.1
Zhang, C.2
Cornette, J.L.3
DeLisi, C.4
-
18
-
-
0030923442
-
A predictive method for the evaluation of peptide binding in pocket 1 of HLA-DRB1 via global minimization of energy interactions
-
Androulakis, I.P., Nayak, N.N., lerapetritou, M.G., Monos, D.S. & Floudas, C.A. (1997). A predictive method for the evaluation of peptide binding in pocket 1 of HLA-DRB1 via global minimization of energy interactions. Proteins 29, 87-102.
-
(1997)
Proteins
, vol.29
, pp. 87-102
-
-
Androulakis, I.P.1
Nayak, N.N.2
Lerapetritou, M.G.3
Monos, D.S.4
Floudas, C.A.5
-
19
-
-
0031008575
-
On the calculation of binding free energies using continuum methods: Application to MHC class I protein-peptide interactions
-
Froloff, N., Windemuth, A. & Honig, B. (1997). On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions. Protein Sci. 6, 1293-1301.
-
(1997)
Protein Sci.
, vol.6
, pp. 1293-1301
-
-
Froloff, N.1
Windemuth, A.2
Honig, B.3
-
20
-
-
0031455540
-
A structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobia pockets
-
Altuvia, Y., Sette, A., Sidney, J., Southwood, S. & Margalit, H. (1997). A structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobia pockets. Human Immunology 58, 1-11.
-
(1997)
Human Immunology
, vol.58
, pp. 1-11
-
-
Altuvia, Y.1
Sette, A.2
Sidney, J.3
Southwood, S.4
Margalit, H.5
-
21
-
-
0029633178
-
MOIL: A program for simulation of macromolecules
-
Elber, R. et al., & Ulitsky A. (1995). MOIL: a program for simulation of macromolecules. Comp. Phys. Commun. 91, 159-189.
-
(1995)
Comp. Phys. Commun.
, vol.91
, pp. 159-189
-
-
Elber, R.1
Ulitsky, A.2
-
22
-
-
33645941402
-
The OPLS potential function for proteins. Energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen, W.L. & Tirado-Rives, J. (1988). The OPLS potential function for proteins. Energy minimizations for crystals of cyclic peptides and crambin. J. Am. Chem. Soc. 110, 1657-1666.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
23
-
-
36449006131
-
Modeling sidechains in peptides and proteins: Application of the locally enhanced sampling and the simulated annealing methods to find minimum energy conformations
-
Roitberg, A. & Eiber, R. (1991). Modeling sidechains in peptides and proteins: application of the locally enhanced sampling and the simulated annealing methods to find minimum energy conformations. J. Chem. Phys. 95, 9277-9287.
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 9277-9287
-
-
Roitberg, A.1
Eiber, R.2
-
24
-
-
0027164958
-
Determining protein loop conformation using scaling-relaxation techniques
-
Zheng, Q., Rosenfeld, R., Vajda, S. & DeLisi, C. (1993). Determining protein loop conformation using scaling-relaxation techniques. Protein Sci. 2, 1242-1248.
-
(1993)
Protein Sci.
, vol.2
, pp. 1242-1248
-
-
Zheng, Q.1
Rosenfeld, R.2
Vajda, S.3
Delisi, C.4
-
25
-
-
0027491716
-
Toward computational determination of peptide-receptor structure
-
Sezerman, U., Vajda, S., Cornette, J. & DeLisi, C. (1993). Toward computational determination of peptide-receptor structure. Protein Sci. 2, 1827-1843.
-
(1993)
Protein Sci.
, vol.2
, pp. 1827-1843
-
-
Sezerman, U.1
Vajda, S.2
Cornette, J.3
DeLisi, C.4
-
26
-
-
0023155210
-
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder, J.W. & Richards, P.M. (1987). Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J. Mol. Biol. 193, 775-791.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, P.M.2
-
27
-
-
0026179489
-
A new approach to the rapid determination of protein sidechain conformations
-
Tuffery, P., Etchebest, C., Hazout, S. & Lavery, R. (1991). A new approach to the rapid determination of protein sidechain conformations. J. Biomol. Struct. Dyn. 8, 1267-1289.
-
(1991)
J. Biomol. Struct. Dyn.
, vol.8
, pp. 1267-1289
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
Lavery, R.4
-
28
-
-
0027160197
-
Backbone-dependent rotamer library for proteins. Application to side-chain prediction
-
Dunbrack, R.L., Jr. & Karplus, M. (1993). Backbone-dependent rotamer library for proteins. Application to side-chain prediction. J. Mol. Biol. 230, 543-574.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 543-574
-
-
Dunbrack Jr., R.L.1
Karplus, M.2
-
29
-
-
0026589733
-
The dead-end elimination theorem and its use in protein side-chain positioning
-
Desmet, J., De Maeyer, M., Hazes, B. & Lasters, I. (1992). The dead-end elimination theorem and its use in protein side-chain positioning. Nature 356, 539-542.
-
(1992)
Nature
, vol.356
, pp. 539-542
-
-
Desmet, J.1
De Maeyer, M.2
Hazes, B.3
Lasters, I.4
-
30
-
-
0027493639
-
The fuzzy-end elimination theorem: Correctly implementing the sidechain placement algorithm based on the dead-end elimination theorem
-
Lasters, I. & Desmet, J. (1993). The fuzzy-end elimination theorem: correctly implementing the sidechain placement algorithm based on the dead-end elimination theorem. Protein Eng. 6, 717-722.
-
(1993)
Protein Eng.
, vol.6
, pp. 717-722
-
-
Lasters, I.1
Desmet, J.2
-
31
-
-
0027185404
-
A method to configure protein side-chains from the main-chain trace in homology modelling
-
Eisenmenger, F., Argos, P. & Abagyan, R. (1993). A method to configure protein side-chains from the main-chain trace in homology modelling. J. Mol. Biol. 231, 849-860.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 849-860
-
-
Eisenmenger, F.1
Argos, P.2
Abagyan, R.3
-
32
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C. et al., & Tasumi, M. (1977). The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Tasumi, M.2
-
33
-
-
0031576989
-
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: A new homology modeling tool
-
Bower, M.J., Cohen, F.E. & Dunbrack, R.L., Jr. (1997). Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool. J. Mol. Biol. 267, 1268-1282.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 1268-1282
-
-
Bower, M.J.1
Cohen, F.E.2
Dunbrack Jr., R.L.3
-
34
-
-
0026019108
-
Prediction of protein side-chain conformation by packing optimization
-
Lee, C. & Subbiah, S. (1991). Prediction of protein side-chain conformation by packing optimization. J. Mol. Biol. 217, 373-388.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 373-388
-
-
Lee, C.1
Subbiah, S.2
-
35
-
-
0030955505
-
Prediction of protein side-chain conformations by principal component analysis for fixed main-chain atoms
-
Ogata, K. & Umeyama, H. (1997). Prediction of protein side-chain conformations by principal component analysis for fixed main-chain atoms. Protein Eng. 10, 353-359.
-
(1997)
Protein Eng.
, vol.10
, pp. 353-359
-
-
Ogata, K.1
Umeyama, H.2
-
36
-
-
0029015770
-
An evaluation of discrete and continuum search techniques for conformational analysis of sidechains in proteins
-
Vasquez, M. (1995). An evaluation of discrete and continuum search techniques for conformational analysis of sidechains in proteins. Biopolymers 36, 53-70.
-
(1995)
Biopolymers
, vol.36
, pp. 53-70
-
-
Vasquez, M.1
-
37
-
-
0018115846
-
Conformation of amino acid side-chains in proteins
-
Janin, J., Wodak, S., Levitt, M. & Maigret, M. (1978). Conformation of amino acid side-chains in proteins. J. Mol. Biol. 125, 357-386.
-
(1978)
J. Mol. Biol.
, vol.125
, pp. 357-386
-
-
Janin, J.1
Wodak, S.2
Levitt, M.3
Maigret, M.4
-
38
-
-
0028598623
-
Determinants of protein side-chain packing
-
Tanimura, R., Kidera, A. & Nakamura, H. (1994). Determinants of protein side-chain packing. Protein Sci. 3, 2358-2365.
-
(1994)
Protein Sci.
, vol.3
, pp. 2358-2365
-
-
Tanimura, R.1
Kidera, A.2
Nakamura, H.3
-
39
-
-
0030623575
-
All in one: A highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination
-
De Maeyer, M., Desmet, J. & Lasters, I. (1997). All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination. Fold. Des. 2, 53-66.
-
(1997)
Fold. Des.
, vol.2
, pp. 53-66
-
-
De Maeyer, M.1
Desmet, J.2
Lasters, I.3
-
40
-
-
0142140800
-
Prediction of protein sidechain conformations: A study on the influence of backbone accuracy on conformation stability in the rotamer space
-
Tuffery, P., Etchebest, C. & Hazout, S. (1997). Prediction of protein sidechain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space. Protein Eng. 10, 361-372.
-
(1997)
Protein Eng.
, vol.10
, pp. 361-372
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
-
41
-
-
0024816521
-
Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin
-
Summers, N.L. & Karplus, M. (1989). Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin. J. Mol. Biol. 210, 785-811.
-
(1989)
J. Mol. Biol.
, vol.210
, pp. 785-811
-
-
Summers, N.L.1
Karplus, M.2
-
42
-
-
0028140474
-
Prediction of protein side-chain conformations from local three-dimensional homology relationships
-
Laughton, C.A. (1994). Prediction of protein side-chain conformations from local three-dimensional homology relationships. J. Mol. Biol. 235, 1088-1097.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1088-1097
-
-
Laughton, C.A.1
-
43
-
-
0028863047
-
The use of position-specific rotamers in model building by homology
-
Chinea, G., Padron, G., Hooft, R.W., Sander, C. & Vriend, G. (1995). The use of position-specific rotamers in model building by homology. Proteins 23, 415-421.
-
(1995)
Proteins
, vol.23
, pp. 415-421
-
-
Chinea, G.1
Padron, G.2
Hooft, R.W.3
Sander, C.4
Vriend, G.5
-
44
-
-
0032100807
-
The role played by environmental residues on sidechain torsional angles within homologous families of proteins: A new method of sidechain modeling
-
Ogata, K. & Umeyama, H. (1998). The role played by environmental residues on sidechain torsional angles within homologous families of proteins: a new method of sidechain modeling. Proteins 31, 355-369.
-
(1998)
Proteins
, vol.31
, pp. 355-369
-
-
Ogata, K.1
Umeyama, H.2
-
45
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack, R.L., Jr. & Cohen, F.E. (1997). Bayesian statistical analysis of protein side-chain rotamer preferences. Protein Sci. 6, 1661-1681.
-
(1997)
Protein Sci.
, vol.6
, pp. 1661-1681
-
-
Dunbrack Jr., R.L.1
Cohen, F.E.2
-
46
-
-
0028429178
-
Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains
-
Dunbrack, R.L., Jr. & Karplus, M. (1994). Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. Nat. Struct. Biol. 1, 334-340.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 334-340
-
-
Dunbrack Jr., R.L.1
Karplus, M.2
-
47
-
-
0027208112
-
Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins
-
Schrauber, H., Eisenhaber, F. & Argos, P. (1993). Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins. J. Mol. Biol. 230, 592-612.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 592-612
-
-
Schrauber, H.1
Eisenhaber, F.2
Argos, P.3
-
48
-
-
0141560472
-
Modeling side-chain conformation
-
Vasquez, M. (1996). Modeling side-chain conformation. Curt. Opin. Struct. Biol. 6, 217-221.
-
(1996)
Curt. Opin. Struct. Biol.
, vol.6
, pp. 217-221
-
-
Vasquez, M.1
-
49
-
-
0030310218
-
How similar must a template protein be for homology modeling by side-chain packing methods?
-
Chung, S.Y. & Subbiah, S. (1996). How similar must a template protein be for homology modeling by side-chain packing methods? Pac. Symp. Biocomput., 126-141.
-
(1996)
Pac. Symp. Biocomput.
, pp. 126-141
-
-
Chung, S.Y.1
Subbiah, S.2
-
50
-
-
0028786978
-
The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins
-
Chung, S.Y. & Subbiah, S. (1995). The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins. Protein Sci. 4, 2300-2309.
-
(1995)
Protein Sci.
, vol.4
, pp. 2300-2309
-
-
Chung, S.Y.1
Subbiah, S.2
-
51
-
-
12644251997
-
Antagonist HIV-1 Gag peptides induce structural changes in HLA B8
-
Reid, S.W. et al., & Jones, E.Y. (1996). Antagonist HIV-1 Gag peptides induce structural changes in HLA B8. J. Exp. Med. 184, 2279-2286.
-
(1996)
J. Exp. Med.
, vol.184
, pp. 2279-2286
-
-
Reid, S.W.1
Jones, E.Y.2
-
52
-
-
0030917013
-
The three-dimensional structure of an H-2Ld-peptide complex explains the unique interaction of Ld with beta-2 microglobulin and peptide
-
Baiendiran, G.K., Solheim, J.C., Young, A.C., Hansen, T.H., Nathenson, S.G. & Sacchettini, J.C. (1997). The three-dimensional structure of an H-2Ld-peptide complex explains the unique interaction of Ld with beta-2 microglobulin and peptide. Proc. Natl Acad. Sci. USA 94, 6880-6885.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6880-6885
-
-
Baiendiran, G.K.1
Solheim, J.C.2
Young, A.C.3
Hansen, T.H.4
Nathenson, S.G.5
Sacchettini, J.C.6
-
53
-
-
0021757436
-
A new force field for molecular mechanical simulation of nucleic acids and proteins
-
Weiner, S.J. et al., & Weiner, P. (1984). A new force field for molecular mechanical simulation of nucleic acids and proteins. J. Am. Chem. Soc. 106, 765-784.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Weiner, P.2
-
54
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B. & Richards, F.M. (1971). The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55, 379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
55
-
-
0023645203
-
Interior and surface of monomeric proteins
-
Miller, S., Janin, J., Lesk, A.M. & Chothia, C. (1987). Interior and surface of monomeric proteins. J. Mol. Biol. 196, 641-656.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 641-656
-
-
Miller, S.1
Janin, J.2
Lesk, A.M.3
Chothia, C.4
-
56
-
-
0028150789
-
Three-dimensional structure of a peptide extending from one end of a class I MHC binding site
-
Collins, E.J., Garboczi, D.N. & Wiley, D.C. (1994). Three-dimensional structure of a peptide extending from one end of a class I MHC binding site. Nature 371, 626-629.
-
(1994)
Nature
, vol.371
, pp. 626-629
-
-
Collins, E.J.1
Garboczi, D.N.2
Wiley, D.C.3
-
57
-
-
0026621224
-
Atomic structure of a human MHC molecule presenting an influenza virus peptide
-
Silver, M.L., Guo, H.C., Strominger, J.L. & Wiley, D.C. (1992). Atomic structure of a human MHC molecule presenting an influenza virus peptide. Nature 360, 367-369.
-
(1992)
Nature
, vol.360
, pp. 367-369
-
-
Silver, M.L.1
Guo, H.C.2
Strominger, J.L.3
Wiley, D.C.4
-
58
-
-
0028871148
-
The three-dimensional structure of a class I major histocompatibility complex molecule missing the alpha 3 domain of the heavy chain
-
Collins, E.J., Garboczi, D.N., Karpusas, M.N. & Wiley, D.C. (1995). The three-dimensional structure of a class I major histocompatibility complex molecule missing the alpha 3 domain of the heavy chain. Proc. Natl Acad. Sci. USA 92, 1218-1221.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 1218-1221
-
-
Collins, E.J.1
Garboczi, D.N.2
Karpusas, M.N.3
Wiley, D.C.4
-
59
-
-
0026794581
-
The three-dimensional structure of HLA-B27 at 2.1 Å resolution suggests a general mechanism for tight peptide binding to MHC
-
Madden, D.R., Gorga, J.C., Strominger, J.L. & Wiley, D.C. (1992). The three-dimensional structure of HLA-B27 at 2.1 Å resolution suggests a general mechanism for tight peptide binding to MHC. Cell 70, 1035-1048.
-
(1992)
Cell
, vol.70
, pp. 1035-1048
-
-
Madden, D.R.1
Gorga, J.C.2
Strominger, J.L.3
Wiley, D.C.4
-
60
-
-
0029965954
-
An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501
-
Smith, K.J., Reid, S.W., Stuart, D.I., McMichael, A.J., Jones, E.Y. & Bell, J.I. (1996). An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501. Immunity 4, 203-213.
-
(1996)
Immunity
, vol.4
, pp. 203-213
-
-
Smith, K.J.1
Reid, S.W.2
Stuart, D.I.3
McMichael, A.J.4
Jones, E.Y.5
Bell, J.I.6
-
61
-
-
0029969665
-
Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53
-
Smith, K.J. et al., & Jones, E.Y. (1996). Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53. Immunity 4, 215-228.
-
(1996)
Immunity
, vol.4
, pp. 215-228
-
-
Smith, K.J.1
Jones, E.Y.2
-
62
-
-
0026673724
-
Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb
-
Fremont, D.H., Matsumura, M., Stura, E.A., Peterson, P.A. & Wilson, I.A. (1992). Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb. Science 257, 919-927.
-
(1992)
Science
, vol.257
, pp. 919-927
-
-
Fremont, D.H.1
Matsumura, M.2
Stura, E.A.3
Peterson, P.A.4
Wilson, I.A.5
-
63
-
-
0028987213
-
Crystal structure of an H-2Kb-ovalbumin peptide complex reveals the interplay of primary and secondary anchor positions in the major histocompatibility complex binding groove
-
Fremont, D.H., Stura, E.A., Matsumura, M., Peterson, P.A. & Wilson, I.A. (1995). Crystal structure of an H-2Kb-ovalbumin peptide complex reveals the interplay of primary and secondary anchor positions in the major histocompatibility complex binding groove. Proc. Natl Acad. Sci. USA 92, 2479-2483.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 2479-2483
-
-
Fremont, D.H.1
Stura, E.A.2
Matsumura, M.3
Peterson, P.A.4
Wilson, I.A.5
-
64
-
-
0027974989
-
The three-dimensional structure of H-2Db at 2.4 Å resolution: Implications for antigen-determinant selection
-
Young, A.C., Zhang, W., Sacchettini, J.C. & Nathenson, S.G. (1994). The three-dimensional structure of H-2Db at 2.4 Å resolution: implications for antigen-determinant selection. Cell 76, 39-50.
-
(1994)
Cell
, vol.76
, pp. 39-50
-
-
Young, A.C.1
Zhang, W.2
Sacchettini, J.C.3
Nathenson, S.G.4
-
65
-
-
0029091980
-
Nonclassical binding of formylated peptide in crystal structure of the MHC class Ib molecule H2-M3
-
Wang, C.R., Castano, A.R., Peterson, P.A., Slaughter, C., Lindahl, K.F. & Deisenhofer, J. (1995). Nonclassical binding of formylated peptide in crystal structure of the MHC class Ib molecule H2-M3. Cell 82, 655-664.
-
(1995)
Cell
, vol.82
, pp. 655-664
-
-
Wang, C.R.1
Castano, A.R.2
Peterson, P.A.3
Slaughter, C.4
Lindahl, K.F.5
Deisenhofer, J.6
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