Mapping AFLP markers associated with subspecific differentiation of Oryza sativa (rice) and an investigation of segregation distortion

Heredity

Volumn 81, Issue 6, 1998, Pages 613-620

  Virk, Parminder S ^a   Ford Lloyd, Brian V ^a   Newbury, H John ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

AFLP; Genetic map; Germplasm; Rice; Segregation distortion

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; GERMPLASM; HAPLOIDY; MOLECULAR MARKER; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEGREGATION DISTORTION;

EID: 0032424571     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6884410     Document Type: Article

References (29)

1. CHANG, T. T. 1976. The origin, evolution, cultivation, dissemination and diversification of Asian and African rices. Euphytica, 25, 425-441.
2. CLOUTIER, S., CAPPADOCIA, M. AND LANDRY, B. S. 1997. Analysis of RFLP mapping inaccuracy in Brassica napus L. Theor. Appl. Genet., 95, 83-91.
3. GLASZMANN, J. C. 1987. Isozymes and the classification of Asian rice varieties. Theor. Appl. Genet., 74, 21-30.
4. HARUSHIMA, Y., KURATA, N., YANO, M., NAGAMURA, Y., SASAKI, T., MINOBE, Y. AND NAKAGAHRA, M. 1996. Detection of segregation distortions in an indica-japonica rice cross using a high-resolution molecular map. Theor. Appl. Genet., 92, 145-150.
5. HUANG, N., MCCOUCH, S. R. MEW, T., PARCO, A. AND GUIDERDONI, E. 1994. Development of a RFLP map from a doubled haploid population of rice. Rice Genet. Newsl., 11, 134-137.
6. KHUSH, G. S. 1997. Origin, dispersal, cultivation and variation of rice. Plant Mol. Biol., 35, 25-34.
7. KOSAMBI, D. D. 1944. The estimation of map distances from recombination values. Ann. Eugen., 12, 172-175.
8. LANDER, E. S., GREEN, P., ABRAHAMSON, J., BARLOW, A., DALY, M., LINCOLN, S. E. AND NEWBURG, L. 1987. Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1, 174-181.
9. LIN, S. Y., IKEHASHI, H., YANAGIHARI, S. AND KAWASHIMA, A. 1992. A segregation distortion via male gametes in hybrids between indica and japonica or wide-compatibility varieties of rice (Oryza sativa L.). Theor. Appl. Genet., 84, 812-818.
10. LINCOLN, S., DALY, M. AND LANDER, E. 1992. Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report, 3rd edn. Whitehead Institute, Cambridge, MA.
11. LYTTLE, T. W. 1991. Segregation distorters. Ann. Rev. Genet., 25, 511-557.
12. MACKILL, D. J., ZHANG, Z., REDONA, E. D. AND COLOWIT, P. M. 1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome, 39, 969-977.
13. MAHESWARAN, M., SUBUDHI, P. K., NANDI, S., XU, J. C., PARCO, A., YANG, D. C. AND HUANG, N. 1997. Polymorphism, distribution, and segregation of AFLP markers in a doubled haploid rice population. Theor. Appl. Genet., 94, 39-45.
14. MARTIN, C., JULIANO, A., NEWBURY, H. J., LU, B. R., JACKSON, M. T. AND FORD-LLOYD, B. V. 1997. The use of RAPD markers to facilitate the identification of Oryza species within a germplasm collection. Genet. Res. Crop Evol., 44, 175-183.
15. PAKNIYAT, H., POWELL, W., BAIRD, E., HANDLEY, L. L., ROBINSON, D., SCRIMGEOUR, C. M. ET AL. 1997. AFLP variation in the wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography. Genome, 40, 332-341.
16. PARSONS, B. J., NEWBURY, H. J., JACKSON, M. T. AND FORDLLOYD, B. V. 1997. Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. Mol. Breeding, 3, 115-125.
17. SAMBROOK, J., FRITSCH, E. F. AND MANIATIS, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York.
18. SINGH, K., ISHII, T., PARCO, A., HUANG, N., BRAR, D. S. AND KHUSH, G. S. 1996. Centromere mapping and orientation of the molecular map of rice (Oryza sativa L.) Proc. Natl. Acad. Sci. U.S.A., 93, 6163-6168.
19. STAM, P. AND VAN OOIJEN, J. W. 1996. JoinMap: Software for the Calculation of Genetic Linkage Maps. Centre for Plant Breeding and Reproduction Research, Wageningen, The Netherlands.
20. VIRK, P. S., NEWBURY, H. J., JACKSON, M. T. AND FORD-LLOYD, B. V. 1995a. The identification of duplicate accessions within a rice germplasm collection using RAPD analysis. Theor. Appl. Genet., 90, 1049-1055.
21. VIRK, P. S., FORD-LLOYD, B. V., JACKSON, M. T. AND NEWBURY, H. J. 1995b. Use of RAPD for the study of diversity within plant germplasm collections. Heredity, 74, 170-179.
22. VIRK, P. S., FORD-LLOYD, B. V., JACKSON, M. T., POONI, H. S., CLEMENO, T. P. AND NEWBURY, H. J. 1996a. Predicting quantitative variation within rice germplasm using molecular markers. Heredity, 76, 296-304.
23. VIRK, P. S., FORD-LLOYD, B. V., JACKSON, M. T., POONI, H. S., CLEMENO, T. P. AND NEWBURY, H. J. 1996b. Marker-assisted prediction of agronomic traits using diverse germplasm. In: Rice Genetics III, pp. 307-316. Proceedings of the Third International Rice Genetics Symposium, 16-20 Octover 1995. IRRI, Manila, Philippines.
24. VOS, P., HOOERS, R., SLEEKER, M., REIJANS, M., LEE, T., HORNES, M. ET AL. 1995. AFLP: a new technique for DNA fingerprinting. Nucl. Acids Res., 23, 4407-4414.
25. 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol. Gen. Genet., 253, 535-545.
26. 1 hybrid of rice. Genes Genet. Syst., 71, 37-41.
27. ZAMIR, D. AND TADMOR, Y. 1986. Unequal segregation of nuclear genes in plants. Bot. Gaz., 147, 355-358.
28. ZHANG, Q., SAGHAI MAROOT, M. A., LU, T. Y. AND SHEN, B. Z. 1992. Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis. Theor. Appl. Genet., 83, 495-459.
29. ZHANG, Q., GAO, Y. J., YANG, S. H., RAGAB, R. A., SAGAHI MAROOF, M. A. AND LI, Z. B. 1994. A diallel analysis of heterosis in elite hybrid rice based on RFLPs and microsatellites. Theor. Appl. Genet., 89, 185-192.