The use of RAPD markers to facilitate the identification of Oryza species within a germplasm collection

Genetic Resources and Crop Evolution

Volumn 44, Issue 2, 1997, Pages 175-183

  Martin, C ^a   Juliano, A ^b   Newbury, H J ^c   Lu, B R ^b   Jackson, M T ^b   Ford Lloyd, B V ^c  

^a Electrotechnical Section   (Spain)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^c UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

classification; genetic resources; Oryza; RAPD; taxonomy

Indexed keywords

ORYZA;

EID: 0030958961     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008678231467     Document Type: Article

References (30)

1. Chang, T.T., S.H. Ou, M.D. Pathak, K.C Ling & H.E. Kauffman, 1975. The search for disease and insect resistance in rice germplasm. In: O.H. Frankel and J.G. Hawkes (Eds.), Crop Genetic Resources for Today and Tomorrow: 183-200. Cambridge: Cambridge University Press.
2. Chang, T.T. 1976. The origin, evolution, cultivation, dissemination and diversification of Asian and African rices. Euphytica 25: 425-441.
3. Duistermaat, 1987. A revision of Oryza (Gramineae) in Malesia and Australia. Blumea 32: 157-193.
4. Fukuoka, S., K. Hosaka & O. Kamijima, 1992. Use of random amplified polymorphic DNAs (RAPDs) for identification of rice accessions. Jpn. J. Genet. 67: 243-252.
5. Glaszmann, J.C., 1987. Isozymes and classification of Asian rice varieties. Theor. Appl. Genet. 74: 21-30.
6. Glaszmann, J.C., 1988. Geographic pattern of variation among Asian native rice cultivars (Oryza sativa L.) based on fifteen isozyme loci. Genome 30: 782-792.
7. Heun, M., J.P. Murphy & T.D. Phillips, 1994. A comparison of RAPD and isozyme analysis for determining genetic relationships among Avena sterilis L. accessions. Theor. Appl. Genet. 87: 689-696.
8. Howell, E.G., H.J. Newbury, R.L. Swennen, L.A. Withers & B.V. Ford-Lloyd, 1994. The use of RAPD for identifying and classifying Musa germplasm. Genome 37: 328-332.
9. Kresovich, S., J.G.K. Williams, J.R. McFerson, EJ. Routman & B.A. Schall, 1992. Characterisation of genetic identities and relationships of Brassica oleracea L. via a random amplified polymorphic DNA assay. Theor. Appl. Genet. 85: 190-196.
10. Ling, K.C., V.M. Aguiero & S.H. Lee, 1970. A mass screening method for testing resistance to grassy stunt disease of rice. Plant Disease Reporter 54: 565-569.
11. Mackill, D.J., 1995. Classifying Japonica Rice Cultivars with RAPD Markers. Crop Sci. 35: 889-894.
12. Nakano, M., A. Yoshimura & N. Iwata, 1992. Phylogenetic study of cultivated rice and its wild relatives by RFLP. Rice Genetics Newsletter 9: 132-134.
13. Ng, N.Q., J.G. Hawkes & J.T. Williams, 1981. The recognition of a new species of rice (Oryza) from Australia. Bot. J. Linnean Soc. 82: 327-330.
14. Orozco-Castillo, C., K.J. Chalmers, R. Waugh & W. Powell, 1994. Detection of genetic diversity and selective gene introgression in coffee using RAPD markers. Theor. Appl. Genet. 87: 934-940.
15. Rohlf, F.J., 1992. NTSYS-PC: numerical taxonomy and multivariate analysis system. Exeter Software, New York.
16. Sambrook, J., E.F. Fritsch & T. Maniatis, 1989. Molecular cloning: A laboratory manual. Second edition, Cold Spring Harbor Laboratory Press, New York.
17. Second, G., 1985. Evolutionary relationship in the Sativa group of Oryza based on isozyme data. Genet. Sel Evol. 17: 89-114.
18. Sharma, S.D. & S.V.S. Shastry, 1965. Taxonomic studies in genus Oryza L. III. O. rufipogon Griff, sensu stricto and O. nivara Sharma et Shastry nom. nov. Indian J. Genet. Plant Breed. 25: 157-167
19. Sharma, S.K., I.K. Dawson & R. Waugh, 1995. Relationships among cultivated and wild lentils revealed by RAPD analysis. Theor. Appl. Genet. 91: 647-654.
20. Tao, Y., J.M. Manners, M.M. Ludlow & R.G. Hanzel, 1993. DNA polymorphism in grain sorghum (Sorghum bicolor L. Moench). Theor. Appl. Genet. 86: 679-688.
21. Tateoka, T., 1963. Taxonomic studies of Oryza. III. Key to the species and their enumeration. Bot. Mag. Tokyo 76: 165-173.
22. Transue, D.K., D.J. Fairbanks, L.R. Robison & W.R. Andersen, 1994. Species identification by RAPD analysis of grain amaranth genetic resources. Crop Sci. 34: 1385-1389.
23. Vaughan, D.A., 1994. The Wild Relatives of Rice: A Genetic Resources Handbook. IRRI. Manila, Philippines.
24. Vaughan, D.A., 1989. The genus Oryza L. Current status of taxonomy. IRRI Research Paper Series, 138, IRRI, Los Baños, The Philippines.
25. Virk, P.S., B.V. Ford-Lloyd, M.T. Jackson & H.J. Newbury, 1995a. Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74: 170-179.
26. Virk P.S., H.J. Newbury, M.T. Jackson & B.V. Ford-Lloyd, 1995b. The identification of duplicate accessions within a rice germplasm collection using RAPD analysis. Theor. Appl. Genet. 90: 1049-1055.
27. Virk P.S., B.V. Ford-Lloyd, M.T. Jackson, H.S. Pooni, T.P. Clemeno & H.J. Newbury, 1996. Predicting quantitative variation within rice germplasm using molecular markers. Heredity 76: 296-304.
28. Wang, Z.Y., G. Second & S.D. Tanksley, 1992. Polymorphism and phylogenetic relationship among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor. Appl. Genet. 83: 565-581.
29. Wilkie, S. E., P.G. Isaac & R.J. Slater, 1993. Random amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium. Theor. Appl. Genet. 86: 497-504.
30. Yu, L.-X. & H.T. Nguyen, 1994. Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.). Theor. Appl. Genet. 87: 668-672.