PCR cloning and expression of the F/10 family xylanase gene from Streptomyces olivaceoviridis E-86

Journal of Fermentation and Bioengineering

Volumn 86, Issue 5, 1998, Pages 434-439

  Kuno, Atsushi ^a,b,c,d   Shimizu, Daisuke ^a,b,c   Kaneko, Satoshi ^e   Koyama, Yoshinori ^c   Yoshida, Shigeki ^a   Kobayashi, Hideyuki ^e   Hayashi, Kiyoshi ^e   Taira, Kazunari ^a,b,c   Kusakabe, Isao ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b NATL INST FOR ADV INTERDISC RES   (Japan)

^c NATL INST BIOSCI HUM TECHNOL   (Japan)

^d YAMAGATA UNIVERSITY   (Japan)

^e NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

Author keywords

4 7 superfamily; F 10 family xylanase; Long range inverse PCR; Streptomyces olivaceoviridis

Indexed keywords

AMINO ACIDS; CLONING; ESCHERICHIA COLI; HYDROLYSIS; POLYSACCHARIDES; SOLUBILITY; SUBSTRATES; YEAST;

XYLANASE;

ENZYMES;

XYLAN ENDO 1,3 BETA XYLOSIDASE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; GENE EXPRESSION; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; POLYMERASE CHAIN REACTION; STREPTOMYCES;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; STREPTOMYCES LIVIDANS; STREPTOMYCES OLIVACEOVIRIDIS;

EID: 0032416187     PISSN: 0922338X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0922-338X(98)80147-5     Document Type: Article

References (24)

1. Gilkes, N. R., Henrissat, B., Kilburn, D. G., Miller, R. C., Jr., and Warren, R. A. J.: Domain in microbial β-1,4-glycanases. Microbiol. Rev., 55, 303-315 (1991).
2. Henrissat, B. and Bairoch, A.: New family in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J., 293, 781-788 (1993).
3. Clarke, J. H., Rixon, J. E., Ciruela, A., Gilbert, H. J., and Hazlewood, G. P.: Family-10 and family-11 xylanases differ in their capacity to enhance the bleachability of hardwood and softwood paper pulp. Appl. Microbiol. Biotechnol., 48, 177-183 (1997).
4. Fujimoto, Z., Mizuno, H., Kuno, A., Yoshida, S., Kobayashi, H., and Kusakabe, I.: Crystallization and preliminary X-ray crystallographic study of Streptomyces olivaceoviridis E-86 β-xylanase. J. Biochem. (Tokyo), 121, 826-828 (1997).
5. Yoshida, S., Ono, T., Matsuo, N., and Kusakabe, I.: Structure of hardwood xylan and specificity of Streptomyces β-xylanase toward the xylan. Biosci. Biotech. Biochem., 58, 2068-2070 (1994).
6. Kusakabe, I., Kawaguchi, M., Yasui, T., and Kobayashi, T.: Purification and some properties of extracellular xylanase from Streptomyces sp. E-86. Nippon Nogeikagaku Kaishi, 51, 429-437 (1977). (in Japanese)
7. Hopwood, D. A., Bibb, M. J., Chater, K. C., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P., Ward, J. M., and Schrempf, H.: In Genetic manipulation of Streptomyces, p. 72-78. The John Innes Foundation, Norwich, U.K. (1985).
8. Saito, H. and Miura, K.: Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim. Biophys. Acta, 72, 619-629 (1963).
9. Shareck, F., Roy, C., Yaguchi, M., Morosoli, R., and Kluepfel, D.: Sequences of three genes specifying xylanases in Streptomyces lividans. Gene, 107, 75-82 (1991).
10. Southern, E. M.: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol., 98, 503-517 (1975).
11. Triglia, T., Peterson, M. G., and Kemp, D. J.: A procedure for in vitro amplification of DNA segments that lie outside the bounderries of known sequences. Nucl. Acids Res., 16, 8186 (1988).
12. Takeo, K., Ohguchi, Y., Hasegawa, R., and Kitamura, S.: Synthesis of 2-and 4-nitrophenyl β-glycosides of β-(1→4)-D-xylo-oligosaccharides of dp 2-4. Carbohydrate Res., 277, 231-244 (1995).
13. Dupont, C., Roberge, M., Shareck, F., Morosoli, R., and Kluepfel, D.: Substrate-binding domains of glycanases from Streptomyces lividans: characterization of a new family of xylan-binding domains. Biochem. J., 330, 41-45 (1998).
14. Somogyi, M.: Notes on sugar determination. J. Biol. Chem., 195, 19-23 (1952).
15. Wrighl, F. and Bibb, M. J.: Codon usage in the G+C-rich Streptomyces genome. Gene, 113, 55-65 (1992).
16. von Heijne, G.: The signal peptide. J. Membrane Biol., 115, 195-201 (1990).
17. Tsujibo, H., Ohtsuki, T., Iio, T., Yamazaki, I., Miyamoto, K., Sugiyama, M., and Inamori, Y.: Cloning and sequence analysis of genes encoding xylanases and acetyl xylan esterase from Streptomyces thermoviolaceus OPC-520. Appl. Environ. Microbiol., 63, 661-664 (1997).
18. Ruiz-Arribas, A., Sánchez, P., Calvete, J. J., Raida, M., Fernández-Abalos, J. M., and Santamaría, R. I.: Analysis of xysA, a gene from Streptomyces haltedii JM8 that encodes a 45-kilodalton modular xylanase, Xysl. Appl. Environ. Microbiol., 63, 2983-2988 (1997).
19. O'Neill, G., Goh, S. H., Warren, R. A., Kilburn, D. G., and Miller, R. C., Jr.: Structure of the gene encoding the exoglucanase of Cellulomonas fimi. Gene, 44, 325-330 (1986).
20. MacLeod, A. M., Lindhorst, T., Withers, S. G., and Warren, R. A. J.: The acid/base catalyst in the exoglucanase/xylanase from Cellulomonas fimi is glutamic acid 127: evidence from detailed kinetic studies of mutants. Biochemistry, 33, 6371-6376 (1994).
21. Vincent, P., Shareck, F., Dupont, C., Morosoli, R., and Kluepfel, D.: New alpha-L-arabinofuranosidase produced by Streptomyces lividans: cloning and DNA sequence of the abfB gene and characterization of the enzyme. Biochem. J., 322, 845-852 (1997).
22. Tomme, P., Warren, R. A. J., and Gilkes, N. R.: Cellulose hydrolysis by bacteria and fungi. Adv. Microb. Physiol., 37, 1-81 (1995).
23. Kitaoka, M., Haga, K., Kashiwagi, Y., Sasaki, T., Taniguchi, H., and Kusakabe, I.: Kinetic studies on p-nitrophenyl-cellobiose hydrolyzing xylanase from Cellvibrio gilvus. Biosci. Biotech. Biochem., 57, 1987-1989 (1993).
24. Moreau, A., Duez, C., and Dusart, J.: GC-rich template amplification by inverse PCR. DNA polymerase and solvent effects. Methods Mol. Biol., 67, 47-53 (1997).