Cloning and sequence analysis of genes encoding xylanases and acetyl xylan esterase from Streptomyces thermoviolaceus OPC-520

Applied and Environmental Microbiology

Volumn 63, Issue 2, 1997, Pages 661-664

  Tsujibo, Hiroshi ^a   Ohtsuki, Takahito ^a   Iio, Takashi ^a   Yamazaki, Isao ^a   Miyamoto, Katsushiro ^a   Sugiyama, Masanori ^b   Inamori, Yoshihiko ^a  

^a OSAKA MEDICAL COLLEGE   (Japan)

^b HIROSHIMA UNIV SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ESTERASE; XYLAN ENDO 1,3 BETA XYLOSIDASE;

ACETYLATION; ARTICLE; BLEACHING; CARBOXY TERMINAL SEQUENCE; DNA SEQUENCE; ENZYME ANALYSIS; FUNGUS GROWTH; GENETIC CODE; NONHUMAN; PAPER INDUSTRY; PULP MILL; STREPTOMYCES;

EID: 0030892096     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.2.661-664.1997     Document Type: Article

References (35)

1. Arise, A., T. Yom, I. Urabe, Y. Hata, Y. Katsube, and H. Okada. 1993. Stabilization of xylanase by random mutagenesis. FEBS Lett. 316:123-127.
2. Delic, I., P. Robbins, and J. Westpheling. 1992. Direct repeat sequences are implicated in the regulation of two Streptomyces chitinase promoters that are subject to carbon catabolite control. Proc. Natl. Acad. Sci. USA 89:1885-1889.
3. Ferreira, L. M., T. M. Wood, G. Williamson, C. Faulds, G. P. Hazlewood, G. W. Black, and H. J. Gilbert. 1993. A modular esterase from Pseudomonas flourescens subsp. cellulosa contains a non-catalytic cellulose-binding domain. Biochem. J. 294:349-355.
4. Fukasaki, E., W. Panbangred, W. Shinmyo, and H. Okada. 1984. The complete nucleotide sequence of the xylanase gene (xynA) of Bacillus pumilis. FEBS Lett. 171:197-201.
5. Gilkes, N. R., B. Henrissat, D. G. Kilburn, R. C. Miller, Jr., and R. A. J. Warren. 1991. Domains in microbial β-1,4-glycanases: sequence conservation, function, and enzyme families. Microbiol. Rev. 55:303-315.
6. Grepinet. O., M.-C. Chebrou, and P. Beguin. 1988. Nucleotide sequence and deletion analysis of the xylanase gene (xynZ) of Clostridium thermocellum. J. Bacteriol. 170:4582-4588.
7. Hall, J., G. P. Hazlewood, N. S. Huskisson, A. J. Durrant, and H. J. Gilbert. 1989. Conserved serine-rich sequences in xylanase and cellulase from Pseudomonas fluorescens subspecies cellulosa: internal signal sequence and unusual protein processing. Mol. Microbiol. 3:1211-1219.
8. Hazlewood, G. P., and H. J. Gilbert. 1993. Molecular biology of hemicellulases, p. 103-126. In M. P. Coughlan and G. P. Hazlewaod (ed.), Hemicellulose and hemicellulases. Portland Press, London, United Kingdom.
9. Hopwood, D. A., M. J. Bibb, K. C. Chater, T. Kieser, C. J. Bruton, H. M. Kieser, D. J. Lydiate, C. P. Smith, J. M. Ward, and H. Schrempf. 1985. Genetic manipulation of Streptomyces: a laboratory manual. The John Innes Foundation, Norwich, United Kingdom.
10. Irwin, D., E. D. Jung, and D. B. Wilson. 1994. Characterization and sequence of a Thermomonospora fusca xylanase. Appl. Environ. Microbiol. 60:763-770.
11. Jung, E. D., G. Lao, D. Irwin, B. K. Barr, A. Benjamin, and D. B. Wilson. 1993. DNA sequences and expression in Streptomyces lividans of an exoglucanase gene and an endoglucanase gene from Thermomonospora fusca. Appl. Environ. Microbiol. 59:3032-3043.
12. Kafetzopoulos, D., G. Thireos, J. Vournakis, and V. Bouriotis. 1993. cDNA cloning of chitin deacetylase of Mucor rouxii, p. 431-436. In R. A. A. Muzzarelli (ed.), Chitin enzymology, Ancona.
13. Kieser, T. 1984. Factors affecting the isolation of cccDNA from Streptomyces lividans and Escherichia coli. Plasmid 12:19-36.
14. Lamb, F. I., L. M. Roberts, and J. M. Lord. 1985. Nucleotide sequence of cloned cDNA coding for preproricin. Eur. J. Biochem. 148:265-270.
15. Lao, G., G. S. Ghangas, E. D. Jung, and D. B. Wilson. 1991. DNA sequences of three β-1,4-endoglucanase genes from Thermomonospora fusca. J. Bacteriol. 173:3397-3407.
16. Lin, E., and D. B. Wilson. 1988. Identification of a celE binding protein and its potential role in induction of the celE gene in Thermomonospora fusca. J. Bacteriol. 170:3843-3846.
17. Lowry, O. H., N. H. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
18. Luthi, E., D. R. Love, J. McAnulty, C. Wallance, A. Caughey, D. Saul, and P. L. Bergquist. 1990. Cloning, sequence analysis, and expression of genes encoding xylan-degrading enzymes from the thermophile Caldocellum saccharolyticum. Appl. Environ. Microbiol. 56:1017-1024.
19. Margolles-Clark, E., M. Tenkanen, H. Soderlund, and M. Penttila. 1996. Acetyl xylan esterase front Trichoderma reesei contains an active-site serine residue and a cellulose-binding domain. Eur. J. Biochem. 237:553-560.
20. Millward-Sadler, S. J., D. M. Poole, B. Henrissat, G. P. Hazlewood, J. H. Clarke, and H. J. Gilbert. 1994. Evidence for a general role for high-affinity non catalytic cellulose-binding domains in microbial plant cell wall hydrolases. Mol. Microbiol. 11:375-382.
21. Moreau, A., M. Roberge, C. Manin, F. Shareck, D. Kluepfel, and R. Morosoli. 1994. Identification of two acidic residues involved in the catalysis of xylanase A from Streptomyces lividans. Biochem. J. 302:291-295.
22. Perlman, D., and H. O. Halvorsson. 1983. A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides. J. Mol. Biol. 167:391-409.
23. Reaney, S. K., S. J. Bungard, and J. R. Guest. 1993. Molecular and enzymological evidence for two classes of fumarase in Bacillus stearothermophilus (var. non-diastaticus). J. Gen. Microbiol. 139:403-416.
24. Rossen, L., A. W. B. Johnston, and J. A. Downie. 1984. DNA sequence of the Rhizobium leguminosarum nodulation genes nodAB and C required for root hair curling. Nucleic Acids Res. 12:9497-9508.
25. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
26. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
27. Seki, N., T. Muta, T. Oda, D. Iwaki, K. Kuma, T. Miyata, and S. Iwanaga. 1994. Horseshoe crab (1,3)-β-D-glucan-sensitive coagulation factor G. J. Biol. Chem. 269:1370-1374.
28. Shareck, F., P. Biely, R. Morosoli, and D. Kluepfel. 1995. Analysis of DNA flanking the xynB locus of Streptomyces lividans reveals genes encoding acetyl xylan esterase and the RNA component of ribonuclease P. Gene 153:105-109.
29. Shareck, F., C. Roy, M. Yaguchi, R. Morosoli, and D. Kluepfel. 1991. Sequence of three genes specifying xylanases in Streptomyces lividans. Gene 107:75-82.
30. Shen, S.-H., P. Chretien, L. Bastien, and S. N. Slilaty. 1991. Primary sequence of the glucanase gene from Oerskovia xanthineolytica. J. Biol. Chem. 266:1058-1063.
31. Shimoi, H., Y. Iimura, T. Obata, and M. Tadenuma. 1992. Molecular structure of Rarobacter faecitabidus protease I. J. Biol. Chem. 267:25189-25195.
32. Srinivasa, B. R., P. J. Vithayathil, R. P. Roy, and K. R. Swaminathan. 1990. Significance of structural homology of Thermoascus aurantiacus xylanase with the exoglucanase of Cellulomonas fimi. J. Protein Chem. 9:337-338.
33. Tomme, P., R. A. J. Warren, and N. R. Gilkes. 1995. Cellulose degradation by bacteria and fungi. Adv. Microb. Physiol. 37:1-81.
34. Tsujibo, H., K. Miyamoto, T. Kuda, K. Minami, T. Sakamoto, T. Hasegawa, and Y. Inamori. 1992. Purification, properties, and partial amino acid sequences of thermostable xylanases from Streptomyces thermoviolaceus OPC-520. Appl. Environ. Microbiol. 58:371-375.
35. von Heijne, G. 1983. Patterns of amino acids near signal sequence cleavage sites. Eur. J. Biochem. 133:17-21.