메뉴 건너뛰기




Volumn 36, Issue 3, 1998, Pages 293-302

Functional gene hybridization patterns of terrestrial ammonia-oxidizing bacteria

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA MONOOXYGENASE; AMMONIA; AUTOTROPHIC AMMONIA OXIDATION; BACTERIAL GENETICS; BACTERIAL GENOME; BIOCHEMICAL PATHWAY; CYTOCHROME C 554; DENITRIFICATION; DNA HYBRIDIZATION; GENE PROBE; HYDROXYLAMINE OXIDOREDUCTASE; MOLECULAR ANALYSIS; NITRITE REDUCTASE; NITROUS OXIDE REDUCTASE; POLYMERASE CHAIN REACTION; SOUTHERN BLOTTING;

EID: 0032412330     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002489900116     Document Type: Article
Times cited : (20)

References (49)
  • 1
    • 0027329330 scopus 로고
    • 2O production by the autotrophic nitrifier Nitrosomonas europaea and the heterotrophic nitrifier Alcaligenes faecalis
    • 2O production by the autotrophic nitrifier Nitrosomonas europaea and the heterotrophic nitrifier Alcaligenes faecalis. Appl Environ Microbiol 59:3525-3533
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3525-3533
    • Anderson, I.C.1    Poth, M.2    Homstead, J.3    Burdige, D.4
  • 2
    • 0027197328 scopus 로고
    • Hydroxylamine oxidoreductase from Nitrosomonas europaea is a multimer of an octaheme subunit
    • Arciero DM, Hooper AB (1993) Hydroxylamine oxidoreductase from Nitrosomonas europaea is a multimer of an octaheme subunit. J Biol Chem 268:14645-14654
    • (1993) J Biol Chem , vol.268 , pp. 14645-14654
    • Arciero, D.M.1    Hooper, A.B.2
  • 3
    • 0028317636 scopus 로고
    • The active site of hydroxylamine oxidoreductase from Nitrosomonas: Evidence for a new metal cluster in enzymes
    • Arciero DM, Lipscomb JD, Hooper AB (1994) The active site of hydroxylamine oxidoreductase from Nitrosomonas: Evidence for a new metal cluster in enzymes. J Amer Chem Soc 116:11961-11968
    • (1994) J Amer Chem Soc , vol.116 , pp. 11961-11968
    • Arciero, D.M.1    Lipscomb, J.D.2    Hooper, A.B.3
  • 5
    • 0028051815 scopus 로고
    • Sequence of the gene, amoB, for the 43-kDa polypeptide of ammonia monooxygenase of Nitrosomonas europaea
    • Bergmann DJ, Hooper AB (1994) Sequence of the gene, amoB, for the 43-kDa polypeptide of ammonia monooxygenase of Nitrosomonas europaea. Biochem Biophys Res Comm 204: 759-762
    • (1994) Biochem Biophys Res Comm , vol.204 , pp. 759-762
    • Bergmann, D.J.1    Hooper, A.B.2
  • 6
    • 0028233314 scopus 로고
    • Organization of the hao gene cluster of Nitrosomonas europaea: Genes for two tetraheme c cytochromes
    • Bergmann DJ, Arciero DM, Hooper AB (1994) Organization of the hao gene cluster of Nitrosomonas europaea: genes for two tetraheme c cytochromes. J Bacteriol 176:3148-3153
    • (1994) J Bacteriol , vol.176 , pp. 3148-3153
    • Bergmann, D.J.1    Arciero, D.M.2    Hooper, A.B.3
  • 7
    • 0028842086 scopus 로고
    • Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donor and nitrite as electron acceptor
    • Bock E, Schmidt L, Stuven R, Zwart D (1995) Nitrogen loss caused by denitrifying Nitrosomonas cells using ammonium or hydrogen as electron donor and nitrite as electron acceptor. Arch Microbiol 163:16-20
    • (1995) Arch Microbiol , vol.163 , pp. 16-20
    • Bock, E.1    Schmidt, L.2    Stuven, R.3    Zwart, D.4
  • 8
    • 0038823375 scopus 로고
    • Soil microbial processes involved in production and consumption of atmospheric trace gases
    • Conrad R (1995) Soil microbial processes involved in production and consumption of atmospheric trace gases. Adv Microb Ecol 14:207-250
    • (1995) Adv Microb Ecol , vol.14 , pp. 207-250
    • Conrad, R.1
  • 9
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensuses) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • deBruijn FJ (1992) Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensuses) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl Env Microbiol 58:2180-2187
    • (1992) Appl Env Microbiol , vol.58 , pp. 2180-2187
    • DeBruijn, F.J.1
  • 11
    • 0027184336 scopus 로고
    • The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
    • Head IM, Hiorns WD, Embley TM, McCarthy AJ, Saunders JR (1993) The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. J Gen Microbiol 139:1147-1153
    • (1993) J Gen Microbiol , vol.139 , pp. 1147-1153
    • Head, I.M.1    Hiorns, W.D.2    Embley, T.M.3    McCarthy, A.J.4    Saunders, J.R.5
  • 13
    • 0023866522 scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben WE, Jansson JK, Chelm BK, Tiedje JM (1988) DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl Environ Microbiol 54:703-711
    • (1988) Appl Environ Microbiol , vol.54 , pp. 703-711
    • Holben, W.E.1    Jansson, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 14
    • 0028074295 scopus 로고
    • Sequence of hcy, a gene encoding cytochrome c-554 from Nitrosomonas europaea
    • Hommes NG, Sayavedra-Soto LA, Arp DJ (1994) Sequence of hcy, a gene encoding cytochrome c-554 from Nitrosomonas europaea. Gene 146:87-89
    • (1994) Gene , vol.146 , pp. 87-89
    • Hommes, N.G.1    Sayavedra-Soto, L.A.2    Arp, D.J.3
  • 16
    • 0028956726 scopus 로고
    • Quaternary structure of the hydroxylamine oxidoreductase from Nitrosomonas europaea
    • Hoppert M, Mahony TJ, Mayer F, Miller DJ (1995) Quaternary structure of the hydroxylamine oxidoreductase from Nitrosomonas europaea. Arch Microbiol 163:300-306
    • (1995) Arch Microbiol , vol.163 , pp. 300-306
    • Hoppert, M.1    Mahony, T.J.2    Mayer, F.3    Miller, D.J.4
  • 17
    • 0001418558 scopus 로고
    • Heterotrophic nitrification
    • Prosser JI (ed), IRL Press, Oxford, UK
    • Killham K (1986) Heterotrophic nitrification. In Prosser JI (ed), Nitrification. IRL Press, Oxford, UK, pp 117-126
    • (1986) Nitrification , pp. 117-126
    • Killham, K.1
  • 18
    • 0029166914 scopus 로고
    • Sequence of an ammonia monooxygenase subunit A-encoding gene from Nitrosospira sp. NpAV
    • Klotz MG, Norton JM (1995) Sequence of an ammonia monooxygenase subunit A-encoding gene from Nitrosospira sp. NpAV. Gene 163:159-160
    • (1995) Gene , vol.163 , pp. 159-160
    • Klotz, M.G.1    Norton, J.M.2
  • 19
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk GA, Stephen JR, de Boer W, Prosser JI, Embley TM, Woldendorp JW (1997) Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63:1489-1497
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    De Boer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 20
    • 0001912435 scopus 로고
    • Ecology of nitrification and denitrification
    • Cole JA, Ferguson S (eds), Cambridge University Press, Cambridge, UK
    • Kuenen JG, Robertson JG (1988) Ecology of nitrification and denitrification. In: Cole JA, Ferguson S (eds), The Nitrogen and Sulfur Cycles. Cambridge University Press, Cambridge, UK, pp 161-218
    • (1988) The Nitrogen and Sulfur Cycles , pp. 161-218
    • Kuenen, J.G.1    Robertson, J.G.2
  • 21
    • 0013620564 scopus 로고
    • A hydroxylamine-cytochrome c reductase occurs in the heterotrophic nitrifier Arthrobacter globiformis
    • Kurokawa M, Fukumori Y, Yamanaka T (1985) A hydroxylamine-cytochrome c reductase occurs in the heterotrophic nitrifier Arthrobacter globiformis. Plant Cell Physiol 26:1439-1442
    • (1985) Plant Cell Physiol , vol.26 , pp. 1439-1442
    • Kurokawa, M.1    Fukumori, Y.2    Yamanaka, T.3
  • 22
    • 0000843240 scopus 로고
    • Isolation of Nitrosomonas in pure culture
    • Lewis RF, Pramer D (1958) Isolation of Nitrosomonas in pure culture. J Bacteriol 76:524-528
    • (1958) J Bacteriol , vol.76 , pp. 524-528
    • Lewis, R.F.1    Pramer, D.2
  • 23
    • 0028240270 scopus 로고
    • Molecular analysis of enrichment cultures of marine ammonia oxidisers
    • McCaig AE, Embley TM, Prosser JI (1994) Molecular analysis of enrichment cultures of marine ammonia oxidisers. FEMS Microbiol Lett 120:363-368
    • (1994) FEMS Microbiol Lett , vol.120 , pp. 363-368
    • McCaig, A.E.1    Embley, T.M.2    Prosser, J.I.3
  • 24
    • 0026295871 scopus 로고
    • Effects of phenolic acids on ammonia oxidation by terrestrial autotrophic nitrifying microorganisms
    • McCarty GW, Bremner JM, Schmidt EL (1991) Effects of phenolic acids on ammonia oxidation by terrestrial autotrophic nitrifying microorganisms. FEMS Microb Ecol 85:345-349
    • (1991) FEMS Microb Ecol , vol.85 , pp. 345-349
    • McCarty, G.W.1    Bremner, J.M.2    Schmidt, E.L.3
  • 25
    • 0027153142 scopus 로고
    • Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea
    • McTavish H, Fuchs JA, Hooper AB (1993) Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea. J Bacteriol 175:2436-2444
    • (1993) J Bacteriol , vol.175 , pp. 2436-2444
    • McTavish, H.1    Fuchs, J.A.2    Hooper, A.B.3
  • 26
    • 0027229172 scopus 로고
    • Multiple copies of genes coding for electron transport proteins in the bacterium Nitrosomonas europaea
    • McTavish H, LaQuier F, Arciero D, Logan M, Mundform G, Fuchs JA, Hooper AB (1993) Multiple copies of genes coding for electron transport proteins in the bacterium Nitrosomonas europaea. J Bacteriol 175:2445-2447
    • (1993) J Bacteriol , vol.175 , pp. 2445-2447
    • McTavish, H.1    LaQuier, F.2    Arciero, D.3    Logan, M.4    Mundform, G.5    Fuchs, J.A.6    Hooper, A.B.7
  • 27
    • 0030001221 scopus 로고    scopus 로고
    • Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
    • Mobarry BK, Wagner M, Urbain V, Rittman BE, Stahl DA (1996) Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl Environ Microbiol 62:2156-2162
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2156-2162
    • Mobarry, B.K.1    Wagner, M.2    Urbain, V.3    Rittman, B.E.4    Stahl, D.A.5
  • 28
    • 0030014717 scopus 로고    scopus 로고
    • The gene encoding ammonia monooxygenase subunit-A exists in nearly identical copies in Nitrosospira sp. NpAV
    • Norton JM, Low JM, Klotz MG (1996) The gene encoding ammonia monooxygenase subunit-A exists in nearly identical copies in Nitrosospira sp. NpAV. FEMS Microbiol Lett 139: 181-188
    • (1996) FEMS Microbiol Lett , vol.139 , pp. 181-188
    • Norton, J.M.1    Low, J.M.2    Klotz, M.G.3
  • 30
    • 0024822090 scopus 로고
    • Autotrophic nitrification in bacteria
    • Prosser JI (1989) Autotrophic nitrification in bacteria. Adv Microbiol Physiol 30:125-181
    • (1989) Adv Microbiol Physiol , vol.30 , pp. 125-181
    • Prosser, J.I.1
  • 31
    • 0016039934 scopus 로고
    • The partial characterization of purified nitrite reductase and hydroxylamine oxidase from Nitrosomonas europaea
    • Ritchie GAF, Nicholas DJD (1974) The partial characterization of purified nitrite reductase and hydroxylamine oxidase from Nitrosomonas europaea. Biochem J 138:471-480
    • (1974) Biochem J , vol.138 , pp. 471-480
    • Ritchie, G.A.F.1    Nicholas, D.J.D.2
  • 32
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe J-H, Witzel K-P, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63:4704-4712
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.-H.1    Witzel, K.-P.2    Liesack, W.3
  • 34
    • 0028047483 scopus 로고
    • Characterization of the gene encoding hydroxylamine oxidoreductase in Nitrosomonas europaea
    • Sayavedra-Soto LA, Hommes NG, Arp DJ (1994) Characterization of the gene encoding hydroxylamine oxidoreductase in Nitrosomonas europaea. J Bacteriol 176:504-510
    • (1994) J Bacteriol , vol.176 , pp. 504-510
    • Sayavedra-Soto, L.A.1    Hommes, N.G.2    Arp, D.J.3
  • 37
    • 0026500942 scopus 로고
    • Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria
    • Smith GB, Tiedje JM (1992) Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria. Appl Environ Microbiol 58:376-384
    • (1992) Appl Environ Microbiol , vol.58 , pp. 376-384
    • Smith, G.B.1    Tiedje, J.M.2
  • 38
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
    • Stephen JR, McCaig AE, Smith Z, Prosser JI, Embley TM (1996) Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl Environ Microbiol 62:4147-4154
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 40
    • 0028079873 scopus 로고
    • Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria
    • Teske A, Alm E, Regan JM, Toze S, Rittmann BE, Stahl DA (1994) Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J Bacteriol 176:6623-6630
    • (1994) J Bacteriol , vol.176 , pp. 6623-6630
    • Teske, A.1    Alm, E.2    Regan, J.M.3    Toze, S.4    Rittmann, B.E.5    Stahl, D.A.6
  • 41
    • 26444548135 scopus 로고
    • Cloning and expression of the hydroxylamine oxidase gene of Nitrosomonas europaea in Pseudomonas putida
    • translated from the Japanese
    • Tokuyama T, Tomita Y, Takahashi R (1988) Cloning and expression of the hydroxylamine oxidase gene of Nitrosomonas europaea in Pseudomonas putida. Hakkokogaku 66:103-107 (translated from the Japanese)
    • (1988) Hakkokogaku , vol.66 , pp. 103-107
    • Tokuyama, T.1    Tomita, Y.2    Takahashi, R.3
  • 42
    • 0030040940 scopus 로고
    • Phylogenetic analysis of seven new isolates of ammonia-oxidizing bacteria based on 16S rRNA gene sequences
    • Utaker JB, Bakken L, Jiang QQ, Nes IF (1995) Phylogenetic analysis of seven new isolates of ammonia-oxidizing bacteria based on 16S rRNA gene sequences. System Appl Microbiol 18:549-559
    • (1995) System Appl Microbiol , vol.18 , pp. 549-559
    • Utaker, J.B.1    Bakken, L.2    Jiang, Q.Q.3    Nes, I.F.4
  • 43
    • 0015349607 scopus 로고
    • Heterotrophic nitrification by Arthrobacter sp
    • Verstraete W, Alexander M (1972) Heterotrophic nitrification by Arthrobacter sp. J Bacteriol 110:955-961
    • (1972) J Bacteriol , vol.110 , pp. 955-961
    • Verstraete, W.1    Alexander, M.2
  • 44
    • 0024095529 scopus 로고
    • Molecular cloning, heterologous expression, and primary structure of the structural gene for the copper enzyme nitrous oxide reductase from denitrifying Pseudomonas stutzeri
    • Viebrock A, Zumft WG (1988) Molecular cloning, heterologous expression, and primary structure of the structural gene for the copper enzyme nitrous oxide reductase from denitrifying Pseudomonas stutzeri. J Bacteriol 170:4658-4668
    • (1988) J Bacteriol , vol.170 , pp. 4658-4668
    • Viebrock, A.1    Zumft, W.G.2
  • 46
    • 0030303004 scopus 로고
    • Nitrification and denitrification: Probing the nitrogen cycle in aquatic environments
    • Ward BB (1995) Nitrification and denitrification: probing the nitrogen cycle in aquatic environments. Microb Ecol 32:247-261
    • (1995) Microb Ecol , vol.32 , pp. 247-261
    • Ward, B.B.1
  • 49
    • 0027531490 scopus 로고
    • Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers
    • Ye RW, Fries MR, Bezborodnikov SG, Averill BA, Tiedje JM (1993) Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers. Appl Environ Microbiol 59:250-254
    • (1993) Appl Environ Microbiol , vol.59 , pp. 250-254
    • Ye, R.W.1    Fries, M.R.2    Bezborodnikov, S.G.3    Averill, B.A.4    Tiedje, J.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.