Registering coronal histological 2-D sections of a rat brain with coronal sections of a 3-D brain atlas using geometric curve invariants and b-spline representation

IEEE Transactions on Medical Imaging

Volumn 17, Issue 6, 1998, Pages 957-966

  Ibrahim, Walid S ^a   Cohen, Fernand S ^a  

^a Drexel University   (United States)

Author keywords

B spline; Curvature; Invariants; Registration

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; ARTIFACT; BRAIN; BRAIN MAPPING; COMPARATIVE STUDY; HISTOLOGY; MALE; METHODOLOGY; PHYSIOLOGY; RAT; REFERENCE VALUE; SPRAGUE DAWLEY RAT;

ALGORITHMS; ANIMALS; ARTIFACTS; BRAIN; BRAIN MAPPING; MALE; RATS; RATS, SPRAGUE-DAWLEY; REFERENCE VALUES;

BRAIN; FEATURE EXTRACTION; NEUROPHYSIOLOGY; TISSUE;

B-SPLINE; BRAIN MAPPING; HISTOLOGICAL CORONAL IMAGES;

MEDICAL IMAGING;

EID: 0032216609     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/42.746628     Document Type: Article

References (37)

1. J. C. Mazziota, A. W. Toga, A. C. Evans, P. T. Fox, and J. L. Lancaster, "Digital brain atlases," TINS, vol. 18, pp. 210-211, May 1995.
2. J. L. Lancaster, T. G. Glass, B. R. Lankpalli, H. Downs, H. Mayberg, and P. T. Fox, "A modality-independent approach to spatial normalization of tomographic-images of the human brain," Human Brain Mapping, vol. 3, pp. 209-223, 1995.
3. D. Kozinska, O. J. Tretiak, J. Nissanov, and C. Ozturk, "Multidimensional alignment using the euclidean distance transform," Comp. Vis., Graph., Image Processing, to be published. [4] R. Bajcsy and S. Kovacic, "Multiresolution elastic matching," Comp. Vis., Graph., Image Processing, vol. 46, pp. 1-21, 1989.
4. G. Subsol, J. P. Thirion, and N. Ayache, "First steps toward automatic building anatomical atlases," INRIA, Tech. Rep. 2216, 1994.
5. M. Singh, R. R. Brechner, and V. W. Henderson, "Neuromagnetic localization using magnetic resonance images," IEEE Trans. Med. Imaging, vol. 11, pp. 129-134, Feb. 1994.
6. C. Davatzikos, J. L. Prince, and R. N. Bryan, "Image registration based on boundary mapping," IEEE Trans. Med. Imaging, vol. 15, pp. 112-115, Feb. 1996.
7. W. Zhao, "Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method," IEEE Trans. Med. Imaging, vol. 11, pp. 129-134, Feb. 1993.
8. E. Persoon and K. S. Fu, "Shape discrimination using fourier descriptors," IEEE Trans. Pattern Anal. Machine Intell, vol. PAMI-8, pp. 388-397, May 1986.
9. C. T. Zahn and R. Z. Roskies, "Fourier descriptors for plane closed curves," IEEE Trans. Comp., vol. C-21, pp. 269-281, Mar. 1972.
10. J. A. Saghri and H. Freeman, "Analysis of the precision of generalized chain codes for the representation of planar curves," IEEE Trans. Pattern Anal. Machine Intell., vol. PAMI-3, pp. 533-539, Sept. 1981.
11. T. Pavlidis and F. All, "Computer recognition of handwritten numerals by polygonal approximations," IEEE Trans. Systems, Man, Cybern., vol. SMC-6, pp. 610-614, Nov. 1975.
12. H. Asada and M. Brady, "The curvature primal sketch," IEEE Trans. Pattern Anal. Machine Intell., vol. PAMI-8, pp. 2-14, Jan. 1986.
13. O. Philbrick, "Shape description with the medial axis transformation," in Pictorial Pattern Recognition, G. C. Cheng, Ed. Washington, DC: Thompson, 1968, pp. 395-407.
14. M. J. Paulik, M. Das, and N. K. Loh, "Nonstationary autoregressive modeling of object contours," IEEE Trans. Signal Processing, vol. 40, pp. 660-675, Mar. 1992.
15. M.-K. Hu, "Visual pattern recognition by moment invariant," IRE Trans. Inform. Theory, vol. IT-8, pp. 179-187, 1962.
16. U. Grenander and D. M. Keenan, "Toward automated image understanding," Appl. Stat., vol. 16, pp. 207-221, 1989.
17. C. De Boor, A Practical Guide to Splines. New York: Springer-Verlag, 1978.
18. F. S. Cohen and J. Y. Wang, "Modeling image curves using invariant 3-D object curve models-A path to 3D recognition and shape estimation from image contours," IEEE Trans. Pattern Anal. Machine Intell., vol. 16, pp. 1-12, Jan. 1994.
19. J. Y. Wang and F. S. Cohen, "3-D object recognition and shape estimation from image contours using B-splines, shape invariant matching, and neural network," IEEE Trans. Pattern Aanal. Machine Intel!., vol. 16, pp. 13-21, Jan. 1994.
20. F. S. Cohen, Z. Huang, and Z. Yang, "Matching and identification of curves using B-splines curve representation," IEEE Trans. Image Processing, vol. 4, pp. 1-10, Jan. 1995.
21. Z. Huang and F. S. Cohen, "Affine-invariant moments and B-splines for object recognition from image curves," IEEE Trans. Image Processing, vol. 5, pp. 1473-1480, Oct. 1996.
22. I. D. Faux and M. J. Pratt, Computational Geometry for Design and Manufacture. Ellis Horwood, 1981.
23. J. D. Foley, A. Van Dam, and S. K. Friener, Computer Graphics: Principles and Practice. Reading, MA: Addison Wesley, 1990.
24. R. S. Millman and G. D. Parher, Elements of Differential Geometry. Englewood Cliffs, NJ: Prentice-Hall, 1977.
25. M. P. Do Carmo, Differential Geometry of Curves and Surfaces. Englewood Cliffs, NJ: Prentice-Hall, 1976.
26. W. Tiller and L. Piegel, The Nurbs Book. New York: Springer-Verlag, 1995.
27. F. Yamaguchi, Curves and Surfaces in Computer Aided Geometric Design. New York: Springer-Verlag, 1988.
28. A. Rangarajan, E. Mjolsness, S. Pappu, L. Davachi, P. S. Goldman-Rakic, and J. S. Duncan, "A robust point matching algorithm for autoradiograph alignment," Visualiz. Biomed. Comp., pp. 277-286, 1996.
29. A. Rangarajan, H. Chui, and L. Bookstein, "The softassign procrustes matching algorithm," Information Processing in Medical Imaging, J. Duncan and G. Gindi, Eds. New York: Springer-Verlag, 1997, pp. 29-42.
30. J. Mundy and A. Zisserman, Eds., Geometric Invariance in Machine Vision. Cambridge, MA: MIT Press, 1992.
31. G. Taubin and D. B. Cooper, "Object recognition based on moment (or algebraic) invariants," in Geometric Invariance in Machine Vision, J. Mundy and A. Zisserman, Eds. Cambridge, MA: MIT Press, 1992, pp. 375-397.
32. I. Weiss, "Noise resistant invariants of curves," in Geometric Invariance in Machine Vision, J. Mundy and A. Zisserman, Eds. Cambridge, MA: MIT Press, 1992, pp. 135-137.
33. A. Zisserman, D. A. Forsyth, J. L. Mundy, and C. A. Rothwell, "Recognizing general curved objects efficiently," in Geometric Invariance in Machine Vision, J. Mundy and A. Zisserman, Eds. Cambridge, MA: MIT Press, 1992, pp. 228-252.
34. L. Piegel, "On NURBS: A survey," IEEE Comp. Graphics Applications, vol. 11, no. 5, 1991.
35. R. A. O'Keef, The Craft of Prolog. Cambridge, MA: MIT Press, 1990.
36. I. Bratko, Prolog Programming for Artificial Intelligence. London, U.K.: Addison Wesley, 1990.
37. F. S. Cohen, Z. Yang, Z. Huang, and J. Nissanov, "Automatic matching of homologous histological," IEEE Trans. Biomed. Eng., vol. 45, pp. 642-650, May 1998.