Four ubiquitously expressed genes, RD (D6S45)-SKI2W (SKIV2L)-DOM3Z-RP1 (D6S60E), are present between complement component genes factor B and C4 in the class III region of the HLA

Genomics

Volumn 53, Issue 3, 1998, Pages 338-347

  Yang, Zhenyu ^a,b,c   Shen, Liming ^a   Dangel, Andrew W ^a   Wu, Lai Chu ^b,c   Yu, C Yung ^a,b,c  

^a NATIONWIDE CHILDREN S HOSPITAL   (United States)

^b OHIO STATE UNIVERSITY   (United States)

^c OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; HLA ANTIGEN; LEUCINE ZIPPER PROTEIN;

ARTICLE; DNA SEQUENCE; GENE LOCATION; GENE LOCUS; GENE SEQUENCE; GENETIC ANALYSIS; HLA SYSTEM; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

CAENORHABDITIS ELEGANS; EUKARYOTA;

EID: 0032211651     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5499     Document Type: Article

References (44)

1. Aguado B. M. C. M., Campbell R. D. Genes of the MHC class III region and the functions of the proteins they encode. HLA and MHC: Genes, Molecules and Function. 1996;BIOS Scientific Publishers, Oxford. p. 39-75.
2. Altschul S. F., Miller G. W., Myers E. W., Liston W. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
3. Bairoch A., Bucher P., Hofmann K. The PROSITE database, its status in 1997. Nucleic Acids Res. 25:1997;217-221.
4. Bentley D. R., Porter R. R. Isolation of cDNA clones for human complement component C2. Proc. Natl. Acad. Sci. USA. 81:1984;1212-1215.
5. Bird A. P. CpG rich islands and the function of DNA methylation. Nature. 321:1986;209-213.
6. Bird A. P. CpG islands as gene markers in the vertebrate nucleus. Trends Genet. 3:1987;342-347.
7. Campbell R. D., Bentley D. R., Morley B. J. The factor B and C2 genes. Philos. Trans. R. Soc. London. B306:1984;367-378.
8. Carroll M. C., Campbell R. D., Bentley D. R., Porter R. R. A molecular map of the human major histocompatibility complex class III region linking complement genes C4, C2 and factor B. Nature. 307:1984;237-241.
9. Carroll M. C., Palsdottir A., Belt K. T., Porter R. R. Deletion of complement C4 and steroid 21-hydroxylase genes in the HLA class III region. EMBO J. 4:1985;2547-2552.
10. Cheng J., Macon K. J., Volanakis J. E. cDNA cloning and characterization of the protein encoded by RD, a gene located in the class III region of the human major histocompatibility complex. Biochem. J. 294:1993;589-593.
11. Dangel A. W., Shen L., Mendoza A. R., Wu L.-C., Yu C. Y. Human helicase gene SKI2W in the HLA class III region exhibits striking structural similarities to the yeast antiviral gene SKI2 and to the human gene KIAA0052: Emergence of a new gene family. Nucleic Acids Res. 23:1995;2120-2126.
12. Fuller-Pace F. V. RNA helicase: Modulators of RNA structure. Trends Cell Biol. 4:1994;271-274.
13. Genetics Computer Group, I. 1991, GCG Sequence Analysis Software Package, Genetics Computer Group, Inc. Madison.
14. Hillier, L. Clark, N. Dubuque, T. Elliston, K. Hawkins, M. Holman, M. Hultman, M. Kucaba, T. Le, M. Lennon, G. Marra, M. Parsons, J. Rifkin, L. Rohlfing, T. Soares, M. Tan, F. Trevaskis, E. Waterston, R. Willisamson, A. Wohldmann, P. Wilson, R. 1996, The WashU-Merck EST Project.
15. Hornstein, E. Abramzon-Talianker, A. Wiesel, I. Michalski, J.P. 1997, The human poly(A)-binding protein (PABP) gene: Structural and functional analysis.
16. Jacobs Anderson J., Parker R. The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SK12 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J. 17:1998;1497-1506.
17. Kawakami A., Tian Q., Duan X., Anderson T., Schlossman S. F., Anderson P. Identification and functional characterization of a TIA-1-related nucleolysin. Proc. Natl. Acad. Sci. USA. 89:1992;8681-8685.
18. Keller W. No end yet to messenger RNA 3′ processing! Cell. 81:1995;829-832.
19. Lee S.-G., Lee I., Park S. H., Kang C., Song K. Identification and characterization of human cDNA homolog to yeast SKI2. Genomics. 25:1995;660-666.
20. Levi-Strauss M., Carroll M. C., Steinmetz M., Meo T. A previously undetected MHC gene with an unusual periodic structure. Science. 240:1988;201-204.
21. -. Mol. Cell. Biol. 15:1995;2763-2771.
22. McClelland M., Nelson M., Raschke E. Effect of site-specific moidification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. 22:1994;3640-3659.
23. Morel Y., Bristow J., Gitelman S. E., Miller W. L. Transcript encoded on the opposite strand of the human steroid 21-hydroxylase/complement component C4 gene locus. Proc. Natl. Acad. Sci. USA. 86:1989;6582-6586.
24. Normore W. M., Shapiro H. S., Setlow P. Fastman G. D. CRC Handbook of Biochemistry and Molecular Biology. 1976.
25. Porter R. R. The complement components coded in the major histocompatibility complexes and their biological function. Immunol. Rev. 87:1985;7-17.
26. Proudfoot N. Poly(A) signals. Cell. 64:1991;671-674.
27. Qu X.D., Yang Z., Zhang S., Shen L., Dangel A. W., Hughes J. H., Redman K. L., Wu L. C., Yu C. Y. The human DEVH-box protein Ski2w is located in nucleoli and ribosomes. Nucleic Acids Res. 26:1998;4068-4077.
28. Quandt K., Frech K., Karas H., Wingender E., Werner T. MatInd and MatInspector-New fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:1995;4878-4884.
29. Rowen, L. Dankers, C. Baskin, D. Faust, J. Loretz, C. Ahearn, M. E. Banta, A. Schwartzell, S. Smith, T. M. Spies, T. Hood, L. 1997, Human HLA class III region containing cAMP response element binding protein-related protein (CREB-RP) and tenascin-X genes, complete cds, complete sequence.
30. Rowen, L. Qin, S. Lasky, S. R. Loretz, C. Dors, M. Mahairas, G. Hood, L. 1998, Mus musculus.
31. Sargent C. A., Anderson M. J., Hsieh A.-L., Kendall E., Gomez-Escobar N., Campbell R. D. Characterisation of the novel gene G11 lying adjacent to the complement C4A gene in the human major histocompatibility complex. Hum. Mol. Genet. 3:1994;481-488.
32. Shen L., Wu L.-C., Sanlioglu S., Chen R., Mendoza A. R., Dangel A. W., Carroll M. C., Zipf W. B., Yu C. Y. Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region: Molecular cloning, exon intron structure, composite retroposon, and breakpoint of gene duplication. J. Biol. Chem. 269:1994;8466-8476.
33. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:1975;503-517.
34. Speiser P. W., White P. C. Structure of the human RD gene: A highly conserved gene in the class III region of the major histocompatibility complex. DNA. 8:1989;745-751.
35. Surowy C. S., Hoganson G., Gosink J., Stunk K., Spritz R. A. The human RD protein is closely related to nuclear RNA-binding proteins and has been highly conserved. Gene. 90:1990;299-302.
36. Takeda, J. 1996, Human pancreatic islet Homo sapiens cDNA similar to HLA class III RP1, mRNA sequence.
37. Taylor P. R., Nash J. T., Theodoridis E., Bygrave A. E., Walport M. J., Botto M. A targeted disruption of the murine complement factor B gene resulting in loss of expression of three genes in close proximity, factor B, C2 and D17H6S45. J. Biol. Chem. 273:1998;1699-1704.
38. Tiwari J. L., Terasaki P. I. HLA and Disease Associations. 1985;Springer-Verlag, New York.
39. Widner W. R., Wickner R. B. Evidence that the SKI antiviral system ofSaccharomyces cerevisiae. Mol. Cell. Biol. 13:1993;4331-4341.
40. Wu L.-C., Morley B. J., Campbell R. D. Cell-specific expression of the human complement protein factor B gene: Evidence for the role of two distinct 5′-flanking elements. Cell. 48:1987;331-342.
41. Yang, Z. Yu, C. Y. 1998, Conservation and polymorphism of the DOM3Z gene located at the RD-SKI2W-DOM3Z-RP1 complex of the MHC complement gene cluster.
42. Yu C. Y. The complete exon-intron structure of a human complement component C4A gene: DNA sequences, polymorphism, and linkage to the 21-hydroxylase genes. J. Immunol. 146:1991;1057-1066.
43. Yu C. Y. Molecular genetics of the human MHC complement gene cluster. Exp. Clin. Immunogenet. 1998.
44. Yu C. Y., Wu L. C., Buluwela L., Milstein C. Cosmid cloning and walking to map human CD1 leucocyte differentiation genes. Methods Enzymol. 217:1993;378-398.