DNA methylation differences associated with tumor tissues identified by genome scanning analysis

Genomics

Volumn 53, Issue 3, 1998, Pages 260-268

  Liang, Gangning ^a   Salem, Carol E ^a   Yu, Mimi C ^a   Nguyen, Hung D ^a   Gonzales, Felicidad A ^a   Nguyen, TuDung T ^a   Nichols, Peter W ^a   Jones, Peter A ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BLADDER; CANCER GENETICS; COLON; DNA METHYLATION; GENE SEQUENCE; GENETIC ANALYSIS; GENOME; PENETRANCE; PRIORITY JOURNAL; PROSTATE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

EID: 0032211596     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5502     Document Type: Article

References (31)

1. Achten S., Behn-Krappa A., Sprengel J. M., Schmitz B., Tesch H., Diehl V., Doerfler W. Patterns of DNA methylation in selected human genes in different Hodgkin's lymphoma and leukemia cell lines and in normal human lymphocytes. Cancer Res. 51:1991;3702-3709.
2. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
3. Barlow D. P., Stoger R., Herrmann B. G., Saito K., Schweifer N. The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus. Nature. 349:1991;84-87.
4. Behn-Krappa A., de Silva U. S., Doerfler W. Patterns of DNA methylation are indistinguishable in different individuals over a wide range of human DNA sequences. Genomics. 11:1991;1-7.
5. Bender C. M., Pao M. M., Jones P. A. Inhibition of DNA methylation by 5-aza-2′-deoxycytidine suppresses the growth of human tumor cell lines. Cancer Res. 58:1998;95-101.
6. Bird A. P. CpG-rich islands and the function of DNA methylation. Nature. 321:1986;209-212.
7. Clark S. J., Harrison J., Paul C. L., Frommer M. High sensitivity mapping of methylated cytosines. Nucleic Acids Res. 22:1994;2990-2997.
8. Gardiner-Garden M., Frommer M. CpG islands in vertebrate genomes. J. Mol. 196:1987;261-282.
9. Gonzalez-Zulueta M., Bender C. M., Yang A. S., Nguyen T., Beart R. W., Van Tornout J. M., Jones P. A. Methylation of the 5′ CpG island of the p16/CDKN2 tumor suppressor gene in normal and transformed human tissues correlates with gene silencing. Cancer Res. 55:1995;4531-4535.
10. Gonzalgo M. L., Jones P. A. Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res. 25:1997;2529-2531.
11. Gonzalgo M. L., Liang G., Spruck C. H. III, Zingg J-M., Rideout W. M. III, Jones P. A. Identification and characterization of differentially methylated regions of genomic DNA by methylation-sensitive arbitrarily primed PCR. Cancer Res. 57:1997;594-599.
12. Gonzalgo M. L., Hayashida T., Bender C. M., Pao M. M., Tsai Y. C., Gonzales F. A., Nguyen H. D., Nguyen T. T., Jones P. A. The role of DNA methylation in expression of the p19/p16 locus in human bladder cancer cell lines. Cancer Res. 58:1998;1245-1252.
13. Greger V., Passarge E., Hopping W., Messmer E., Horsthemke B. Epigenetic changes may contribute to the formation and spontaneous regression of retinoblastoma. Hum. Genet. 83:1989;155-158.
14. Herman J. G.et al. Silencing of the VHL tumor suppressor gene by DNA methylation in renal carcinoma. Proc. Natl. Acad. Sci. USA. 91:1994;9700-9704.
15. Huang T. H., Laux D. E., Hamlin B. C., Tran P., Lubahn D. B. Identification of DNA methylation markers for breast carcinomas using the methylation-sensitive restriction fingerprinting technique. Cancer Res. 57:1997;1030-1034.
16. Huynh H., Alpert L. Silencing of the mammary-derived growth inhibitor (MDGI) gene in breast neoplasms is associated with epigenetic changes. Cancer Res. 56:1996;4865-4870.
17. Issa J-P. J., Ottaviano Y. L., Celano P., Hamilton S. R., Davidson N. E., Baylin S. B. Methylation of the oestrogen receptor CpG island links ageing and neoplasia in human colon. Nat. Genet. 7:1994;536-540.
18. Issa J-P. J., Baylin S. B., Belinsky S. A. Methylation of the estrogen receptor CpG island in lung tumors is related to the specific type of carcinogen exposure. Cancer Res. 56:1996;3655-3658.
19. Jones P. A. DNA methylation errors and cancer. Cancer Res. 56:1996;2463-2467.
20. Li H., Bestor T. H., Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell. 69:1992;915-926.
21. Merlo A., Herman J. G., Mao L., Lee D. J., Gabrielson E., Burger P. C., Baylin S., Sidransky D. 5′ CpG island methylation is associated with transcriptional silencing of the tumor suppressor p16/CDKN2/MTS 1 in human cancers. Nat. Med. 1:1995;668-692.
22. Michalowsky L. A., Jones P. A. Gene structure and transcription in mouse cells with extensively demethylated DNA. Mol. Cell. Biol. 9:1989;885-892.
23. Ottaviano Y. L., Issa J-P., Parl F. F., Smith H. S., Baylin S. B., Davidson N. E. Methylation of the estrogen receptor gene CpG island marks loss of estrogen receptor expression in human breast cancer cells. Cancer Res. 54:1994;2552-2555.
24. Riggs A. D., Pfeifer G. P. X-chromosome inactivation and cell memory. Trends Genet. 8:1992;169-174.
25. Sakai T., Toguchida J., Ohtani N., Yandell D. W., Rapaport J. M., Dryja T. P. Allele-specific hypermethylation of the retinoblastoma tumor suppressor gene. Am. J. Hum. Genet. 48:1991;880-888.
26. Snedecor G. W., Cochran W. G. Statistical Methods. 1967.
27. Steenman M. J., Rainier S., Dobry C. J., Grundy P., Horon I. L., Feinberg A. P. Loss of imprinting of IGF2 is linked to reduced expression and abnormal methylation of H19 in Wilm's tumor. Nat. Genet. 7:1994;433-439.
28. Stoger R., Kubicka P., Liu C-G., Kafri T., Razin A., Cedar H., Barlow D. P. Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal. Cell. 73:1993;61-71.
29. Takagi H., Tajima S., Asano A. Overexpression of DNA methyltransferase in myoblast cells accelerates myotube formation. Eur. J. Biochem. 231:1995;282-291.
30. Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:1990;7213-7218.
31. Wutz A., Smrzka O. W., Schweifer N., Schellanders K., Wagner E. F., Barlow D. P. Imprinted expression of the Igf2r gene depends on an intronic CpG island. Nature. 389:1997;745-749.