메뉴 건너뛰기




Volumn 321, Issue 7, 1998, Pages 611-620

The 'evolutionary signal' of homoplasy in protein-coding gene sequences and its consequences for a priori weighting in phylogeny;Le 'signal evolutif' de l'homoplasie dans les sequences de genes codants et ses implications pour la ponderation en phylogenie

Author keywords

A priori weighting; Consistency index; Cytochrome b; Homoplasy; Mitochondrial DNA evolution; Parsimony; Phylogeny; Saturation

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

EID: 0032127857     PISSN: 07644469     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0764-4469(98)80464-2     Document Type: Article
Times cited : (126)

References (31)
  • 1
    • 0002426780 scopus 로고    scopus 로고
    • Homoplasy connections and disconnections: Genes and species, molecules and morphology
    • M.J. Sanderson, L. Hufford (eds), Academic Press, San Diego
    • [1] Doyle J.J., Homoplasy connections and disconnections: genes and species, molecules and morphology, in: M.J. Sanderson, L. Hufford (eds), Homoplasy, the Recurrence of Similarity in Evolution, Academic Press, San Diego, 1996, 37-66.
    • (1996) Homoplasy, the Recurrence of Similarity in Evolution , pp. 37-66
    • Doyle, J.J.1
  • 2
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene of mammals
    • [2] Irwin D.M., Kocher T.D., Wilson A.C., Evolution of the cytochrome b gene of mammals, J. Mol. Evol. 32 (1991) 128-144.
    • (1991) J. Mol. Evol. , vol.32 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 4
    • 0025832424 scopus 로고
    • Isolation and characterization of DNA from archaeological bone
    • [4] Hagelberg E., Clegg J.B., Isolation and characterization of DNA from archaeological bone, Proc. R. Soc. Lond. B 244 (1991) 45-50.
    • (1991) Proc. R. Soc. Lond. B , vol.244 , pp. 45-50
    • Hagelberg, E.1    Clegg, J.B.2
  • 5
    • 0029621004 scopus 로고
    • Molecular phylogeny based on the k-casein and cytochrome b sequences in the mammalian suborder Ruminantia
    • [5] Chikuni K., Mori Y., Tabata T., Saito M., Momma M., Kosugiyama M., Molecular phylogeny based on the k-casein and cytochrome b sequences in the mammalian suborder Ruminantia, J. Mol. Evol. 41 (1995) 859-866.
    • (1995) J. Mol. Evol. , vol.41 , pp. 859-866
    • Chikuni, K.1    Mori, Y.2    Tabata, T.3    Saito, M.4    Momma, M.5    Kosugiyama, M.6
  • 7
    • 0030162680 scopus 로고    scopus 로고
    • Phylogenetics of the Caprinae based on cytochrome b sequence
    • [7] Groves P., Shields G., Phylogenetics of the Caprinae based on cytochrome b sequence, Mol. Phyl. Evol. 5 (1996) 467-476.
    • (1996) Mol. Phyl. Evol. , vol.5 , pp. 467-476
    • Groves, P.1    Shields, G.2
  • 8
    • 0002015259 scopus 로고
    • The principles of classification and a classification of mammals
    • [8] Simpson G.G., The principles of classification and a classification of mammals, Bull. Am. Museum Nat. Hist. 85 (1945) 1-350.
    • (1945) Bull. Am. Museum Nat. Hist. , vol.85 , pp. 1-350
    • Simpson, G.G.1
  • 9
    • 0004327233 scopus 로고
    • Johns Hopkins University Press, Baltimore and London, 1629 pp.
    • [9] Nowak R.M., Walker's mammals of the word, 5th ed., vol. II, Johns Hopkins University Press, Baltimore and London, 1991, 1629 pp.
    • (1991) Walker's Mammals of the Word, 5th Ed. , vol.2
    • Nowak, R.M.1
  • 10
    • 0019983804 scopus 로고
    • Complete sequence of bovine mitochondrial DNA, conserved feature of the mammalian mitochondrial genome
    • [10] Anderson S., De Bruijn M.H.L., Coulson A.R., Eperon I.C., Sanger F., Young I.G., Complete sequence of bovine mitochondrial DNA, Conserved feature of the mammalian mitochondrial genome, J. Mol. Evol. 156 (1982) 683-717.
    • (1982) J. Mol. Evol. , vol.156 , pp. 683-717
    • Anderson, S.1    De Bruijn, M.H.L.2    Coulson, A.R.3    Eperon, I.C.4    Sanger, F.5    Young, I.G.6
  • 12
    • 0000941526 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • [12] Kluge A.G., Farris J.S., Quantitative phyletics and the evolution of anurans, Syst. Zool. 30 (1969) 1-32.
    • (1969) Syst. Zool. , vol.30 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 13
    • 84963060232 scopus 로고
    • A measure of the information content of phylogenetic trees, and its use as an optimality criterion
    • [13] Brooks D.R., O'grady R.T., Wiley E.O., A measure of the information content of phylogenetic trees, and its use as an optimality criterion, Syst. Zool. 35 (1986) 571-581.
    • (1986) Syst. Zool. , vol.35 , pp. 571-581
    • Brooks, D.R.1    O'grady, R.T.2    Wiley, E.O.3
  • 14
    • 0026296265 scopus 로고
    • Homoplasy and the choice among cladograms
    • [14] Goloboff P.A., Homoplasy and the choice among cladograms, Cladistics 7 (1991) 215-232.
    • (1991) Cladistics , vol.7 , pp. 215-232
    • Goloboff, P.A.1
  • 15
    • 0001481951 scopus 로고
    • Why autapomorphies should be removed: A reply to Yeates
    • [15] Bryant H.N., Why autapomorphies should be removed: a reply to Yeates, Cladistics 11 (1995) 381-384.
    • (1995) Cladistics , vol.11 , pp. 381-384
    • Bryant, H.N.1
  • 16
    • 0028176239 scopus 로고
    • Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record
    • [16] Philippe H., Sorhannus U., Baroin A., Perasso R., Gasse F., Adoutte A., Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record, J. Evol. Biol. 7 (1994) 247-265.
    • (1994) J. Evol. Biol. , vol.7 , pp. 247-265
    • Philippe, H.1    Sorhannus, U.2    Baroin, A.3    Perasso, R.4    Gasse, F.5    Adoutte, A.6
  • 17
    • 0024318517 scopus 로고
    • Evolutionary conservation of protein regions in the proton-motive cytochrome b and their possible roles in redox catalysis
    • [17] Howell N., Evolutionary conservation of protein regions in the proton-motive cytochrome b and their possible roles in redox catalysis, J. Mol. Evol. 29 (1989) 157-169.
    • (1989) J. Mol. Evol. , vol.29 , pp. 157-169
    • Howell, N.1
  • 18
    • 0020328686 scopus 로고
    • Mitochondrial DNA sequences of primates; tempo and mode of evolution
    • [18] Brown W.M., Prager E.M., Wang A., Wilson A.C., Mitochondrial DNA sequences of primates; Tempo and mode of evolution, J. Mol. Evol. 18 (1982) 225-239.
    • (1982) J. Mol. Evol. , vol.18 , pp. 225-239
    • Brown, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 19
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and non-synonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • [19] Li W.H., Wu C.I., Luo C.C., A new method for estimating synonymous and non-synonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes, Mol. Biol. Evol. 2 (1985) 150-174.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 20
    • 0027966917 scopus 로고
    • Strand asymetry in human mitochondrial DNA mutations
    • [20] Tanaka M., Ozawa T., Strand asymetry in human mitochondrial DNA mutations, Genomics 22 (1994) 327-335.
    • (1994) Genomics , vol.22 , pp. 327-335
    • Tanaka, M.1    Ozawa, T.2
  • 21
    • 0031020582 scopus 로고    scopus 로고
    • Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria
    • [21] Foster P.G., Jermiin L.S., Hickey D.A., Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria, J. Mol. Evol. 44 (1997) 282-288.
    • (1997) J. Mol. Evol. , vol.44 , pp. 282-288
    • Foster, P.G.1    Jermiin, L.S.2    Hickey, D.A.3
  • 22
    • 0023653121 scopus 로고
    • Inequality in mutation rates of the two strands of DNA
    • [22] Wu C.I., Maeda N., Inequality in mutation rates of the two strands of DNA, Nature 327 (1987) 169-170.
    • (1987) Nature , vol.327 , pp. 169-170
    • Wu, C.I.1    Maeda, N.2
  • 23
    • 0028922156 scopus 로고
    • Intrastrand parity rules of DNA base composition and usage biases of synonymous codons
    • [23] Sueoka N., Intrastrand parity rules of DNA base composition and usage biases of synonymous codons, J. Mol. Evol. 40 (1995) 318-325.
    • (1995) J. Mol. Evol. , vol.40 , pp. 318-325
    • Sueoka, N.1
  • 24
    • 0029000323 scopus 로고
    • Evidence from analyses of intergenie regions for strand-specific directional mutation pressure in Metazoan mitochondrial DNA
    • [24] Jermiin L.S., Graur D., Crozier R.H., Evidence from analyses of intergenie regions for strand-specific directional mutation pressure in Metazoan mitochondrial DNA, Mol. Biol. Evol. 12 (1995) 558-563.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 558-563
    • Jermiin, L.S.1    Graur, D.2    Crozier, R.H.3
  • 25
    • 0030026404 scopus 로고    scopus 로고
    • Cytochrome b nucleotide sequences and the identification of five primary lineages of extant Cetaceans
    • [25] Arnason U., Gullberg A., Cytochrome b nucleotide sequences and the identification of five primary lineages of extant Cetaceans, Mol. Biol. Evol. 13 (1996) 407-417.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 407-417
    • Arnason, U.1    Gullberg, A.2
  • 26
    • 0030969833 scopus 로고    scopus 로고
    • Phylogenetic relationships of Artiodactyls and Cetaceans as deduced from the comparaison of cytochrome b and 12S rRNA mitochondrial sequences
    • [26] Montgelard C., Catzeflis F., Douzery E., Phylogenetic relationships of Artiodactyls and Cetaceans as deduced from the comparaison of cytochrome b and 12S rRNA mitochondrial sequences, Mol. Biol. Evol. 14 (1997) 550-559.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 550-559
    • Montgelard, C.1    Catzeflis, F.2    Douzery, E.3
  • 29
    • 0029907143 scopus 로고    scopus 로고
    • A critical study of homoplasy in molecular data with the use of a morphologically based cladogram, and its consequences for character weighting
    • [29] Philippe H., Lecointre G., Le H.L.V., Le Guyader H., A critical study of homoplasy in molecular data with the use of a morphologically based cladogram, and its consequences for character weighting, Mol. Biol. Evol. 13 (1996) 1174-1186.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1174-1186
    • Philippe, H.1    Lecointre, G.2    Le, H.L.V.3    Le Guyader, H.4
  • 30
    • 54649083185 scopus 로고    scopus 로고
    • Molecular systematics of the subfamily Caprinae (Artiodactyla, Bovidae) as determined from cytochrome b sequences
    • in press
    • [30] Hassanin A., Pasquet E., Vigne J.D., Molecular systematics of the subfamily Caprinae (Artiodactyla, Bovidae) as determined from cytochrome b sequences, J. Mammal. Evol. (1998) (in press).
    • (1998) J. Mammal. Evol.
    • Hassanin, A.1    Pasquet, E.2    Vigne, J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.