The environment of 5S rRNA in the ribosome: Cross-links to the GTPase-associated area of 23S rRNA

Nucleic Acids Research

Volumn 26, Issue 11, 1998, Pages 2519-2525

  Sergiev, Petr ^a   Dokudovskaya, Svetlana ^a   Romanova, Elena ^a   Topin, Andrey ^a   Bogdanov, Alexey ^a   Brimacombe, Richard ^b   Dontsova, Olga ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

GUANOSINE TRIPHOSPHATASE; RNA 23S; RNA 5S; URIDINE;

ARTICLE; CONTROLLED STUDY; CROSS LINKING; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; RIBOSOME; RNA STRUCTURE; RNA TRANSCRIPTION; ULTRAVIOLET RADIATION;

BASE SEQUENCE; BINDING SITES; CROSS-LINKING REAGENTS; DEOXYURIDINE; GTP PHOSPHOHYDROLASES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RIBOSOMES; RNA, BACTERIAL; RNA, RIBOSOMAL, 23S; RNA, RIBOSOMAL, 5S; URIDINE; URIDINE TRIPHOSPHATE;

ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0032102925     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.11.2519     Document Type: Article

References (48)

1. Rosett, R. and Monier, R. (1963) Biochim. Biophys. Acta, 68, 653-656.
2. Noller, H.F. and Garrett, R.A. (1979) J. Mol. Biol., 132, 621-636.
3. Göringer, H.U., Szymkowiak, C. and Wagner, R. (1984) Eur. J. Biochem., 144, 24-34.
4. Hancock, J. and Wagner, R. (1982) Nucleic Acids Res., 10, 1257-1269.
5. Brunel, C., Romby, P., Westhof, E., Ehresmann, C. and Ehresmann, B. (1991) J. Mol. Biol., 221, 293-308.
6. Christiansen, J. and Garrett, R.A. (1986) In Hardesty, B. and Kramer, G. (eds), Structure, Function and Genetics of Ribosomes. Springer-Verlag, New York, NY, pp. 253-269.
7. Göringer, H.U. and Wagner, R. (1986) Biol. Chem. Hoppe-Seyler, 367, 769-780.
8. Shatsky, I., Evstafieva, A., Bystrova, T., Bogdanov, A. and Vasiliev, V. (1980) FEBS Lett., 121, 97-100.
9. Evstafieva, A., Shatsky, I., Bogdanov, A. and Vasiliev, V. (1985) FEBS Lett., 185, 57-62.
10. Stöffler, G. and Stöffler-Meilicke, M. (1986) In Hardesty, B. and Kramer, G. (eds), Structure, Function and Genetics of Ribosomes. Springer-Verlag, New York, NY, pp. 28-46.
11. Oakes, M, Henderson, E., Scheinman, A., Clark, M. and Lake, J.A. (1986) In Hardesty, B. and Kramer, G. (eds), Structure, Function and Genetics of Ribosomes. Springer-Verlag, New York, NY, pp. 47-67.
12. Noller, H.F. and Herr, W. (1974) J. Mol. Biol., 90, 181-184.
13. Herr, W. and Noller, H.F. (1979) J. Mol. Biol., 130, 421-432.
14. Branlant, C., Krol, A., Sriwidada, J. and Brimacombe, R. (1976) Eur. J. Biochem., 70, 483-492.
15. Dontsova, O., Tishkov, V., Dokudovskaya, S., Bogdanov, A., Döring, T., Rinke-Appel, J., Thamm, S., Greuer, B. and Brimacombe, R. (1994) Proc. Natl. Acad. Sci. USA, 91, 4125-4129.
16. Dokudovskaya, S., Dontsova, O., Shpanchenko, O., Bogdanov, A. and Brimacombe, R. (1996) RNA, 2, 146-152.
17. Sergiev, P., Lavrik, I., Wlasoff, V., Dokudovskaya, S., Dontsova, O., Bogdanov, A. and Brimacombe, R. (1997) RNA, 3, 464-475.
18. Sigurdsson, S., Tuschl, T. and Eckstein, F. (1995) RNA, 1, 575-583.
19. Bochkareva, E.S., Lissin, N.M. and Girshovich, A.S. (1988) Nature, 336, 254-257.
20. Bochkarev, D. and Kogon, A. (1992) Anal. Biochem., 204, 90-95.
21. Kuznetsova, L.G., Romanova, E.A., Volkov, E.M., Tashlitsky, V.N. and Shabarova, Z.A. (1995) Bioorgan. Khimia (Russ.), 19, 455-466.
22. Jones, R.F (1984) In Gait, M.G. (ed.), Oligonucleotide Synthesis: A Practical Approach. IRL Press, Oxford, UK, pp. 23-24.
23. Nassal, M. (1984) J. Am. Chem. Soc., 106, 7540-7545.
24. Zwieb, C. and Brimacombe, R. (1979) Nucleic Acids Res., 6, 1775-1790.
25. Volckaert, G. and Fiers, W. (1977) Anal. Biochem., 83, 222-227.
26. Dohme, F. and Nierhaus, K.H. (1976) J. Mol. Biol., 107, 585-599.
27. Von Ahsen, U. and Noller, H.F. (1995) Science, 267, 234-237.
28. Moazed, D., Stern, S. and Noller, H.F. (1986) J. Mol. Biol., 187, 399-416.
29. Fox, G.E. and Woese, C.R. (1975) Nature, 256, 505-506.
30. Brimacombe, R. (1995) Eur. J. Biochem., 230, 365-383.
31. Rinke-Appel, J., Jünke, N., Osswald, M. and Brimacombe, R. (1995) RNA, 1, 1018-1028.
32. Stiege, W., Atmadja, J., Zobawa, M. and Brimacombe, R. (1986) J. Mol. Biol., 191, 135-138.
33. Vester, B. and Garrett, R.A. (1988) EMBO J., 7, 3577-3587.
34. Larsen, N. (1992) Proc. Natl. Acad. Sci. USA, 89, 5044-5048.
35. Rosendahl, G., Hansen, L.H. and Douthwaite, S. (1995) J. Mol. Biol.. 249, 59-68.
36. Moazed, D. and Noller, H.F. (1988) Nature, 334, 362-364.
37. Sköld, S.E. (1983) Nucleic Acids Res., 11, 4923-4932.
38. Rosendahl, G. and Douthwaite, S. (1994) Nucleic Acids Res., 22, 357-363.
39. Stark, H., Orlova, E.V., Rinke-Appel, J., Jünke, N., Mueller, F., Rodnina, M., Wintermeyer, W., Brimacombe, R. and van Heel, M. (1997) Cell, 88, 19-28.
40. Osswald, M., Greuer, B. and Brimacombe, R. (1990) Nucleic Acids Res., 18, 6755-6760.
41. Egebjerg, J., Douthwaite, S., Liljas, A. and Garrett, R.A. (1990) J. Mol. Biol., 213, 275-288.
42. Walleczek, J., Schüler, D., Stöffler-Meilicke, M., Brimacombe, R. and Stöffler, G. (1988) EMBO J., 7, 3571-3576.
43. Garrett, R.A. and Noller, H.F. (1979) J. Mol. Biol., 132, 637-648.
44. Peattie, D.A., Douthwaite, S., Garrett, R.A. and Noller, H.F. (1981) Proc. Natl. Acad. Sci. USA, 78, 7331-7335.
45. Huber, P.W. and Wool, I.G. (1984) Proc. Natl. Acad. Sci. USA, 81, 322-326.
46. Shpanchenko, O., Zvereva, M., Dontsova, O., Nierhaus, K.H. and Bogdanov, A. (1996) FEBS Lett., 394, 71-75.
47. Mueller, F. and Brimacombe, R. (1997) J. Mol. Biol., 271, 524-544.
48. Baranov, P. et al. (1998) RNA, in press.