메뉴 건너뛰기




Volumn 37, Issue 1, 1998, Pages 77-85

Characterization of rbcL group IA introns from two colonial volvocalean species (Chlorophyceae)

Author keywords

Gonium multicoccum; Group IA intron; Intron evolution; Large subunit of ribulose 1,5 bisphosphate carboxylase oxygenase (rbcL) gene; Pleodorina californica; Volvocales

Indexed keywords

ALGA; BACTERIOPHAGE; BASE PAIRING; CELL NUCLEUS DNA; CHLOROPLAST DNA; EXON; GENETICS; HYBRIDIZATION; INTRON; LINEAGE; MATURATION; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC ANALYSIS; RNA;

EID: 0032078743     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1005904410345     Document Type: Article
Times cited : (22)

References (39)
  • 1
    • 0027251980 scopus 로고
    • Nucleotide sequence and secondary structure of the chloroplast group I intron Cr.psbA-2: Novel features of this self-splicing ribozyme
    • Bao Y, Herrin DL: Nucleotide sequence and secondary structure of the chloroplast group I intron Cr.psbA-2: novel features of this self-splicing ribozyme. Nucl Acids Res 21: 1667 (1993).
    • (1993) Nucl Acids Res , vol.21 , pp. 1667
    • Bao, Y.1    Herrin, D.L.2
  • 2
    • 0028113405 scopus 로고
    • An intron in the thymindylate synthetase gene of Bacillus bacteriophage beta22: Evidence for independent evolution of a gene, its group I intron, and the intron open reading frame
    • Bechhofer DH, Hue KK, Shub DA: An intron in the thymindylate synthetase gene of Bacillus bacteriophage beta22: evidence for independent evolution of a gene, its group I intron, and the intron open reading frame. Proc Natl Acad Sci USA 91: 11669-11673 (1994).
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11669-11673
    • Bechhofer, D.H.1    Hue, K.K.2    Shub, D.A.3
  • 4
    • 0024214064 scopus 로고
    • Conserved sequences and structures of group I introns: Building an active site for RNA catalysis: review
    • Cech TR: Conserved sequences and structures of group I introns: building an active site for RNA catalysis: review. Gene 73: 259-271 (1988).
    • (1988) Gene , vol.73 , pp. 259-271
    • Cech, T.R.1
  • 5
    • 0028146967 scopus 로고
    • A comparative database of group I intron structures
    • Damberger SH, Gutell RR: A comparative database of group I intron structures. Nucl Acids Res 22: 3508-3510 (1994).
    • (1994) Nucl Acids Res , vol.22 , pp. 3508-3510
    • Damberger, S.H.1    Gutell, R.R.2
  • 6
    • 0028067613 scopus 로고
    • Loss of the ORF in the SSUrRNA group I intron of one Naegleria lineage
    • De Jonckheere JF, Brown S: Loss of the ORF in the SSUrRNA group I intron of one Naegleria lineage. Nucl Acids Res 22: 3925-3927 (1994).
    • (1994) Nucl Acids Res , vol.22 , pp. 3925-3927
    • De Jonckheere, J.F.1    Brown, S.2
  • 7
    • 0022356458 scopus 로고
    • The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. I. Complete DNA sequence and analysis of the nine intervening sequences
    • Gingrich JC, Hallick RB: The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. I. Complete DNA sequence and analysis of the nine intervening sequences. J Biol Chem 260: 16156-16161 (1985).
    • (1985) J Biol Chem , vol.260 , pp. 16156-16161
    • Gingrich, J.C.1    Hallick, R.B.2
  • 8
    • 0022358117 scopus 로고
    • The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. II. The spliced mRNA and its product
    • Gingrich JC, Hallick RB: The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. II. The spliced mRNA and its product. J Biol Chem 260: 16162-16168 (1985).
    • (1985) J Biol Chem , vol.260 , pp. 16162-16168
    • Gingrich, J.C.1    Hallick, R.B.2
  • 9
    • 0028124527 scopus 로고
    • The DNA polymerase genes of several HMV-bacteriophages have similar group I introns with highly divergent open reading frames
    • Goodrich-Blair H, Shub DA: The DNA polymerase genes of several HMV-bacteriophages have similar group I introns with highly divergent open reading frames. Nucl Acids Res 22: 3715-3721 (1994).
    • (1994) Nucl Acids Res , vol.22 , pp. 3715-3721
    • Goodrich-Blair, H.1    Shub, D.A.2
  • 11
    • 1842411934 scopus 로고    scopus 로고
    • Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis
    • Hedtke B, Borner T, Weihe A: Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 227: 809-811 (1997).
    • (1997) Science , vol.227 , pp. 809-811
    • Hedtke, B.1    Borner, T.2    Weihe, A.3
  • 12
    • 0001311362 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • Higgins DG, Bleasby AJ, Fuchs R: CLUSTAL V: improved software for multiple sequence alignment. CABIOS 8: 198-191 (1991).
    • (1991) CABIOS , vol.8 , pp. 198-1191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 13
    • 0026713654 scopus 로고
    • Structure and evolution of myxomycete nuclear group I introns: A model for horizontal transfer by intron homing
    • Johansen S, Johansen T, Faugli F: Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing. Curr Genet 22: 297-304 (1992).
    • (1992) Curr Genet , vol.22 , pp. 297-304
    • Johansen, S.1    Johansen, T.2    Faugli, F.3
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120 (1980).
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 15
    • 0026227807 scopus 로고
    • Nucleotide sequence of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the green alga Bryopsis maxima
    • Kono M, Satoh H, Okabe Y, Abe Y, Nakayama K, Okada M: Nucleotide sequence of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the green alga Bryopsis maxima. Plant Mol Biol 17: 505-508 (1991).
    • (1991) Plant Mol Biol , vol.17 , pp. 505-508
    • Kono, M.1    Satoh, H.2    Okabe, Y.3    Abe, Y.4    Nakayama, K.5    Okada, M.6
  • 16
    • 0027305131 scopus 로고
    • Introns as mobile genetic elements
    • Lambowitz AM, Belfort M: Introns as mobile genetic elements. Annu Rev Biochem 62: 587-622 (1993).
    • (1993) Annu Rev Biochem , vol.62 , pp. 587-622
    • Lambowitz, A.M.1    Belfort, M.2
  • 17
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman DJ, Person WR: Rapid and sensitive protein similarity searches. Science 227: 1435-1441 (1985).
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Person, W.R.2
  • 18
    • 84989640509 scopus 로고
    • Intron revealed by nucleotide sequence of large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from Codium fragile (Chlorophyta): Phylogenetic analysis
    • Manhart JR, VonderHaar RA: Intron revealed by nucleotide sequence of large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from Codium fragile (Chlorophyta): phylogenetic analysis. J Phycol 27: 613-617 (1991).
    • (1991) J Phycol , vol.27 , pp. 613-617
    • Manhart, J.R.1    VonderHaar, R.A.2
  • 19
    • 0025678737 scopus 로고
    • Modelling the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F, Westhof E: Modelling the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216: 585-610 (1990).
    • (1990) J Mol Biol , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 20
    • 0028005960 scopus 로고
    • Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from cladistic analysis based on morphological data
    • Nozaki H, Ito M: Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from cladistic analysis based on morphological data. J Phycol 30: 353-365 (1994).
    • (1994) J Phycol , vol.30 , pp. 353-365
    • Nozaki, H.1    Ito, M.2
  • 21
    • 0001651636 scopus 로고
    • Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from rbcL gene sequence data
    • Nozaki H, Ito M, Sano R, Uchida H, Watanabe MM, Kuroiwa T: Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from rbcL gene sequence data. J Phycol 31: 970-979 (1995).
    • (1995) J Phycol , vol.31 , pp. 970-979
    • Nozaki, H.1    Ito, M.2    Sano, R.3    Uchida, H.4    Watanabe, M.M.5    Kuroiwa, T.6
  • 22
    • 0030971613 scopus 로고    scopus 로고
    • Phylogenetic analysis of Yamagishiella and Platydorina (Volvocaceae, Chlorophyta) based on rbcL gene sequences
    • Nozaki H, Ito M, Sano R, Uchida H, Watanabe MM, Takahashi H, Kuroiwa T: Phylogenetic analysis of Yamagishiella and Platydorina (Volvocaceae, Chlorophyta) based on rbcL gene sequences. J Phycol 33: 272-278 (1997).
    • (1997) J Phycol , vol.33 , pp. 272-278
    • Nozaki, H.1    Ito, M.2    Sano, R.3    Uchida, H.4    Watanabe, M.M.5    Takahashi, H.6    Kuroiwa, T.7
  • 23
    • 0001163756 scopus 로고
    • Isolation of the chloroplast DNA and the sequence of the trnK gene from Cyanidium caldarium strain RK-1
    • Ohta N, Nagashima H, Kawano S, Kuroiwa, T: Isolation of the chloroplast DNA and the sequence of the trnK gene from Cyanidium caldarium strain RK-1. Plant Cell Physiol 33: 657-661 (1992).
    • (1992) Plant Cell Physiol , vol.33 , pp. 657-661
    • Ohta, N.1    Nagashima, H.2    Kawano, S.3    Kuroiwa, T.4
  • 24
    • 0025950944 scopus 로고
    • Searching protein sequences libraries: Comparison of the sensitivity of the Smith-Waterman and FASTA algorithms
    • Pearson WR: Searching protein sequences libraries: comparison of the sensitivity of the Smith-Waterman and FASTA algorithms. Genomics 11: 635-650 (1991).
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 25
    • 0023989064 scopus 로고
    • Imported tools for biological sequence comparison
    • Pearson WR, Lipman DJ: Imported tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 2444-2448 (1988).
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425 (1987).
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0025432831 scopus 로고
    • Structure and expression of a gene encoding the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) in the colourless euglenoid flagellate Astasia longa
    • Siemeister G, Hachtel W: Structure and expression of a gene encoding the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) in the colourless euglenoid flagellate Astasia longa. Plant Mol Biol 14: 825-833 (1991).
    • (1991) Plant Mol Biol , vol.14 , pp. 825-833
    • Siemeister, G.1    Hachtel, W.2
  • 29
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF, Waterman MS: Identification of common molecular subsequences. J Mol Biol 147: 195-197 (1981).
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 30
    • 84920314697 scopus 로고    scopus 로고
    • Horizontal transmission of group I introns mediated by viruses
    • Songsri P, Suzuki S, Fujie M, Yamada T: Horizontal transmission of group I introns mediated by viruses. Nucl Acids Symp Ser 35: 197-198 (1996).
    • (1996) Nucl Acids Symp Ser , vol.35 , pp. 197-198
    • Songsri, P.1    Suzuki, S.2    Fujie, M.3    Yamada, T.4
  • 31
    • 0002812749 scopus 로고
    • Isolation of the cell-nuclear, mitochondrial, and chloroplast DNA from the ultra-small eukaryote Cyanidioschyzon merolae
    • Suzuki K, Ohta N, Kuroiwa T: Isolation of the cell-nuclear, mitochondrial, and chloroplast DNA from the ultra-small eukaryote Cyanidioschyzon merolae. Protoplasma 171: 80-84 (1992).
    • (1992) Protoplasma , vol.171 , pp. 80-84
    • Suzuki, K.1    Ohta, N.2    Kuroiwa, T.3
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680 (1994).
    • (1994) Nucl Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 0025872720 scopus 로고
    • Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos
    • Turmel M, Boulanger J, Schnare MN, Gray MW, Lemieux C: Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos. J Mol Biol 218: 293-311 (1991).
    • (1991) J Mol Biol , vol.218 , pp. 293-311
    • Turmel, M.1    Boulanger, J.2    Schnare, M.N.3    Gray, M.W.4    Lemieux, C.5
  • 34
    • 0027454523 scopus 로고
    • Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas
    • Turmel M, Mercier JP, Côté MJ: Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas. Nucl Acids Res 22: 5242-5250 (1993).
    • (1993) Nucl Acids Res , vol.22 , pp. 5242-5250
    • Turmel, M.1    Mercier, J.P.2    Côté, M.J.3
  • 35
    • 0027383799 scopus 로고
    • Evidence for independent acquisition of group I introns in green algae
    • Van Oppen MJH, Olsen JL, Stam WT: Evidence for independent acquisition of group I introns in green algae. Mol Biol Evol 10: 1317-1326 (1993).
    • (1993) Mol Biol Evol , vol.10 , pp. 1317-1326
    • Van Oppen, M.J.H.1    Olsen, J.L.2    Stam, W.T.3
  • 37
    • 0026496491 scopus 로고
    • Group I introns within the nuclear-encoded small-subunit rRNA gene of three green algae
    • Wilcox LW, Lewis LA, Fuerst PA, Taylor JW: Group I introns within the nuclear-encoded small-subunit rRNA gene of three green algae. Mol Biol Evol 9: 1103-1118 (1992).
    • (1992) Mol Biol Evol , vol.9 , pp. 1103-1118
    • Wilcox, L.W.1    Lewis, L.A.2    Fuerst, P.A.3    Taylor, J.W.4
  • 38
    • 0029432264 scopus 로고
    • Horizontal transmission of group-I ribozymes: Viruses as a carrier of the introns
    • Yamada T, Songsri P, Tamura K: Horizontal transmission of group-I ribozymes: viruses as a carrier of the introns. Nucl Acids Symp Ser 34: 119-120 (1995).
    • (1995) Nucl Acids Symp Ser , vol.34 , pp. 119-120
    • Yamada, T.1    Songsri, P.2    Tamura, K.3
  • 39
    • 0010702150 scopus 로고
    • Chlorella chloroplast DNA sequence containing a gene for the subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a part of a possible gene for the beta′ subunit of RNA polymerase
    • Yoshinaga K, Ohta T, Suzuki Y, Sugiura, M: Chlorella chloroplast DNA sequence containing a gene for the subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a part of a possible gene for the beta′ subunit of RNA polymerase. Plant Mol Biol 10: 245-250 (1988).
    • (1988) Plant Mol Biol , vol.10 , pp. 245-250
    • Yoshinaga, K.1    Ohta, T.2    Suzuki, Y.3    Sugiura, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.