-
1
-
-
0027251980
-
Nucleotide sequence and secondary structure of the chloroplast group I intron Cr.psbA-2: Novel features of this self-splicing ribozyme
-
Bao Y, Herrin DL: Nucleotide sequence and secondary structure of the chloroplast group I intron Cr.psbA-2: novel features of this self-splicing ribozyme. Nucl Acids Res 21: 1667 (1993).
-
(1993)
Nucl Acids Res
, vol.21
, pp. 1667
-
-
Bao, Y.1
Herrin, D.L.2
-
2
-
-
0028113405
-
An intron in the thymindylate synthetase gene of Bacillus bacteriophage beta22: Evidence for independent evolution of a gene, its group I intron, and the intron open reading frame
-
Bechhofer DH, Hue KK, Shub DA: An intron in the thymindylate synthetase gene of Bacillus bacteriophage beta22: evidence for independent evolution of a gene, its group I intron, and the intron open reading frame. Proc Natl Acad Sci USA 91: 11669-11673 (1994).
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 11669-11673
-
-
Bechhofer, D.H.1
Hue, K.K.2
Shub, D.A.3
-
3
-
-
0023664964
-
Structural conventions for group I introns
-
Burke JM, Belfort M, Cech TR, Davis RW, Schweyen RJ, Shub DA, Szostack JW, Tabak HF: Structural conventions for group I introns. Nucl Acids Res 15: 7217-7221 (1987).
-
(1987)
Nucl Acids Res
, vol.15
, pp. 7217-7221
-
-
Burke, J.M.1
Belfort, M.2
Cech, T.R.3
Davis, R.W.4
Schweyen, R.J.5
Shub, D.A.6
Szostack, J.W.7
Tabak, H.F.8
-
4
-
-
0024214064
-
Conserved sequences and structures of group I introns: Building an active site for RNA catalysis: review
-
Cech TR: Conserved sequences and structures of group I introns: building an active site for RNA catalysis: review. Gene 73: 259-271 (1988).
-
(1988)
Gene
, vol.73
, pp. 259-271
-
-
Cech, T.R.1
-
5
-
-
0028146967
-
A comparative database of group I intron structures
-
Damberger SH, Gutell RR: A comparative database of group I intron structures. Nucl Acids Res 22: 3508-3510 (1994).
-
(1994)
Nucl Acids Res
, vol.22
, pp. 3508-3510
-
-
Damberger, S.H.1
Gutell, R.R.2
-
6
-
-
0028067613
-
Loss of the ORF in the SSUrRNA group I intron of one Naegleria lineage
-
De Jonckheere JF, Brown S: Loss of the ORF in the SSUrRNA group I intron of one Naegleria lineage. Nucl Acids Res 22: 3925-3927 (1994).
-
(1994)
Nucl Acids Res
, vol.22
, pp. 3925-3927
-
-
De Jonckheere, J.F.1
Brown, S.2
-
7
-
-
0022356458
-
The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. I. Complete DNA sequence and analysis of the nine intervening sequences
-
Gingrich JC, Hallick RB: The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. I. Complete DNA sequence and analysis of the nine intervening sequences. J Biol Chem 260: 16156-16161 (1985).
-
(1985)
J Biol Chem
, vol.260
, pp. 16156-16161
-
-
Gingrich, J.C.1
Hallick, R.B.2
-
8
-
-
0022358117
-
The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. II. The spliced mRNA and its product
-
Gingrich JC, Hallick RB: The Euglena gracilis chloroplast ribulose-1,5-bisphosphate carboxylase gene. II. The spliced mRNA and its product. J Biol Chem 260: 16162-16168 (1985).
-
(1985)
J Biol Chem
, vol.260
, pp. 16162-16168
-
-
Gingrich, J.C.1
Hallick, R.B.2
-
9
-
-
0028124527
-
The DNA polymerase genes of several HMV-bacteriophages have similar group I introns with highly divergent open reading frames
-
Goodrich-Blair H, Shub DA: The DNA polymerase genes of several HMV-bacteriophages have similar group I introns with highly divergent open reading frames. Nucl Acids Res 22: 3715-3721 (1994).
-
(1994)
Nucl Acids Res
, vol.22
, pp. 3715-3721
-
-
Goodrich-Blair, H.1
Shub, D.A.2
-
11
-
-
1842411934
-
Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis
-
Hedtke B, Borner T, Weihe A: Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 227: 809-811 (1997).
-
(1997)
Science
, vol.227
, pp. 809-811
-
-
Hedtke, B.1
Borner, T.2
Weihe, A.3
-
12
-
-
0001311362
-
CLUSTAL V: Improved software for multiple sequence alignment
-
Higgins DG, Bleasby AJ, Fuchs R: CLUSTAL V: improved software for multiple sequence alignment. CABIOS 8: 198-191 (1991).
-
(1991)
CABIOS
, vol.8
, pp. 198-1191
-
-
Higgins, D.G.1
Bleasby, A.J.2
Fuchs, R.3
-
13
-
-
0026713654
-
Structure and evolution of myxomycete nuclear group I introns: A model for horizontal transfer by intron homing
-
Johansen S, Johansen T, Faugli F: Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing. Curr Genet 22: 297-304 (1992).
-
(1992)
Curr Genet
, vol.22
, pp. 297-304
-
-
Johansen, S.1
Johansen, T.2
Faugli, F.3
-
14
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120 (1980).
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
15
-
-
0026227807
-
Nucleotide sequence of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the green alga Bryopsis maxima
-
Kono M, Satoh H, Okabe Y, Abe Y, Nakayama K, Okada M: Nucleotide sequence of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the green alga Bryopsis maxima. Plant Mol Biol 17: 505-508 (1991).
-
(1991)
Plant Mol Biol
, vol.17
, pp. 505-508
-
-
Kono, M.1
Satoh, H.2
Okabe, Y.3
Abe, Y.4
Nakayama, K.5
Okada, M.6
-
16
-
-
0027305131
-
Introns as mobile genetic elements
-
Lambowitz AM, Belfort M: Introns as mobile genetic elements. Annu Rev Biochem 62: 587-622 (1993).
-
(1993)
Annu Rev Biochem
, vol.62
, pp. 587-622
-
-
Lambowitz, A.M.1
Belfort, M.2
-
17
-
-
0021919480
-
Rapid and sensitive protein similarity searches
-
Lipman DJ, Person WR: Rapid and sensitive protein similarity searches. Science 227: 1435-1441 (1985).
-
(1985)
Science
, vol.227
, pp. 1435-1441
-
-
Lipman, D.J.1
Person, W.R.2
-
18
-
-
84989640509
-
Intron revealed by nucleotide sequence of large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from Codium fragile (Chlorophyta): Phylogenetic analysis
-
Manhart JR, VonderHaar RA: Intron revealed by nucleotide sequence of large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from Codium fragile (Chlorophyta): phylogenetic analysis. J Phycol 27: 613-617 (1991).
-
(1991)
J Phycol
, vol.27
, pp. 613-617
-
-
Manhart, J.R.1
VonderHaar, R.A.2
-
19
-
-
0025678737
-
Modelling the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel F, Westhof E: Modelling the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 216: 585-610 (1990).
-
(1990)
J Mol Biol
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
20
-
-
0028005960
-
Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from cladistic analysis based on morphological data
-
Nozaki H, Ito M: Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from cladistic analysis based on morphological data. J Phycol 30: 353-365 (1994).
-
(1994)
J Phycol
, vol.30
, pp. 353-365
-
-
Nozaki, H.1
Ito, M.2
-
21
-
-
0001651636
-
Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from rbcL gene sequence data
-
Nozaki H, Ito M, Sano R, Uchida H, Watanabe MM, Kuroiwa T: Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from rbcL gene sequence data. J Phycol 31: 970-979 (1995).
-
(1995)
J Phycol
, vol.31
, pp. 970-979
-
-
Nozaki, H.1
Ito, M.2
Sano, R.3
Uchida, H.4
Watanabe, M.M.5
Kuroiwa, T.6
-
22
-
-
0030971613
-
Phylogenetic analysis of Yamagishiella and Platydorina (Volvocaceae, Chlorophyta) based on rbcL gene sequences
-
Nozaki H, Ito M, Sano R, Uchida H, Watanabe MM, Takahashi H, Kuroiwa T: Phylogenetic analysis of Yamagishiella and Platydorina (Volvocaceae, Chlorophyta) based on rbcL gene sequences. J Phycol 33: 272-278 (1997).
-
(1997)
J Phycol
, vol.33
, pp. 272-278
-
-
Nozaki, H.1
Ito, M.2
Sano, R.3
Uchida, H.4
Watanabe, M.M.5
Takahashi, H.6
Kuroiwa, T.7
-
23
-
-
0001163756
-
Isolation of the chloroplast DNA and the sequence of the trnK gene from Cyanidium caldarium strain RK-1
-
Ohta N, Nagashima H, Kawano S, Kuroiwa, T: Isolation of the chloroplast DNA and the sequence of the trnK gene from Cyanidium caldarium strain RK-1. Plant Cell Physiol 33: 657-661 (1992).
-
(1992)
Plant Cell Physiol
, vol.33
, pp. 657-661
-
-
Ohta, N.1
Nagashima, H.2
Kawano, S.3
Kuroiwa, T.4
-
24
-
-
0025950944
-
Searching protein sequences libraries: Comparison of the sensitivity of the Smith-Waterman and FASTA algorithms
-
Pearson WR: Searching protein sequences libraries: comparison of the sensitivity of the Smith-Waterman and FASTA algorithms. Genomics 11: 635-650 (1991).
-
(1991)
Genomics
, vol.11
, pp. 635-650
-
-
Pearson, W.R.1
-
25
-
-
0023989064
-
Imported tools for biological sequence comparison
-
Pearson WR, Lipman DJ: Imported tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 2444-2448 (1988).
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
26
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425 (1987).
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
27
-
-
0025432831
-
Structure and expression of a gene encoding the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) in the colourless euglenoid flagellate Astasia longa
-
Siemeister G, Hachtel W: Structure and expression of a gene encoding the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) in the colourless euglenoid flagellate Astasia longa. Plant Mol Biol 14: 825-833 (1991).
-
(1991)
Plant Mol Biol
, vol.14
, pp. 825-833
-
-
Siemeister, G.1
Hachtel, W.2
-
28
-
-
0023956575
-
Structural conservation among three homologous introns of bacteriophage T4 and group I introns of eukaryotes
-
Shub DA, Gott JM, Xu MQ, Lang BF, Michel F, Tomaschewski J, Pedersen-Lane J, Belfort M: Structural conservation among three homologous introns of bacteriophage T4 and group I introns of eukaryotes. Proc Natl Acad Sci USA 85: 11521-1155 (1988).
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 11521-21155
-
-
Shub, D.A.1
Gott, J.M.2
Xu, M.Q.3
Lang, B.F.4
Michel, F.5
Tomaschewski, J.6
Pedersen-Lane, J.7
Belfort, M.8
-
29
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith TF, Waterman MS: Identification of common molecular subsequences. J Mol Biol 147: 195-197 (1981).
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
30
-
-
84920314697
-
Horizontal transmission of group I introns mediated by viruses
-
Songsri P, Suzuki S, Fujie M, Yamada T: Horizontal transmission of group I introns mediated by viruses. Nucl Acids Symp Ser 35: 197-198 (1996).
-
(1996)
Nucl Acids Symp Ser
, vol.35
, pp. 197-198
-
-
Songsri, P.1
Suzuki, S.2
Fujie, M.3
Yamada, T.4
-
31
-
-
0002812749
-
Isolation of the cell-nuclear, mitochondrial, and chloroplast DNA from the ultra-small eukaryote Cyanidioschyzon merolae
-
Suzuki K, Ohta N, Kuroiwa T: Isolation of the cell-nuclear, mitochondrial, and chloroplast DNA from the ultra-small eukaryote Cyanidioschyzon merolae. Protoplasma 171: 80-84 (1992).
-
(1992)
Protoplasma
, vol.171
, pp. 80-84
-
-
Suzuki, K.1
Ohta, N.2
Kuroiwa, T.3
-
32
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680 (1994).
-
(1994)
Nucl Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
0025872720
-
Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos
-
Turmel M, Boulanger J, Schnare MN, Gray MW, Lemieux C: Six group I introns and three internal transcribed spacers in the chloroplast large subunit ribosomal RNA gene of the green alga Chlamydomonas eugametos. J Mol Biol 218: 293-311 (1991).
-
(1991)
J Mol Biol
, vol.218
, pp. 293-311
-
-
Turmel, M.1
Boulanger, J.2
Schnare, M.N.3
Gray, M.W.4
Lemieux, C.5
-
34
-
-
0027454523
-
Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas
-
Turmel M, Mercier JP, Côté MJ: Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas. Nucl Acids Res 22: 5242-5250 (1993).
-
(1993)
Nucl Acids Res
, vol.22
, pp. 5242-5250
-
-
Turmel, M.1
Mercier, J.P.2
Côté, M.J.3
-
35
-
-
0027383799
-
Evidence for independent acquisition of group I introns in green algae
-
Van Oppen MJH, Olsen JL, Stam WT: Evidence for independent acquisition of group I introns in green algae. Mol Biol Evol 10: 1317-1326 (1993).
-
(1993)
Mol Biol Evol
, vol.10
, pp. 1317-1326
-
-
Van Oppen, M.J.H.1
Olsen, J.L.2
Stam, W.T.3
-
36
-
-
0003808713
-
-
National Institute for Environmental Studies, Tsukuba
-
Watanabe MM, Nozaki H: NIES-Collection, List of Strains, Algae and Protozoa, 4th ed. National Institute for Environmental Studies, Tsukuba (1994).
-
(1994)
NIES-Collection, List of Strains, Algae and Protozoa, 4th Ed.
-
-
Watanabe, M.M.1
Nozaki, H.2
-
37
-
-
0026496491
-
Group I introns within the nuclear-encoded small-subunit rRNA gene of three green algae
-
Wilcox LW, Lewis LA, Fuerst PA, Taylor JW: Group I introns within the nuclear-encoded small-subunit rRNA gene of three green algae. Mol Biol Evol 9: 1103-1118 (1992).
-
(1992)
Mol Biol Evol
, vol.9
, pp. 1103-1118
-
-
Wilcox, L.W.1
Lewis, L.A.2
Fuerst, P.A.3
Taylor, J.W.4
-
38
-
-
0029432264
-
Horizontal transmission of group-I ribozymes: Viruses as a carrier of the introns
-
Yamada T, Songsri P, Tamura K: Horizontal transmission of group-I ribozymes: viruses as a carrier of the introns. Nucl Acids Symp Ser 34: 119-120 (1995).
-
(1995)
Nucl Acids Symp Ser
, vol.34
, pp. 119-120
-
-
Yamada, T.1
Songsri, P.2
Tamura, K.3
-
39
-
-
0010702150
-
Chlorella chloroplast DNA sequence containing a gene for the subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a part of a possible gene for the beta′ subunit of RNA polymerase
-
Yoshinaga K, Ohta T, Suzuki Y, Sugiura, M: Chlorella chloroplast DNA sequence containing a gene for the subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a part of a possible gene for the beta′ subunit of RNA polymerase. Plant Mol Biol 10: 245-250 (1988).
-
(1988)
Plant Mol Biol
, vol.10
, pp. 245-250
-
-
Yoshinaga, K.1
Ohta, T.2
Suzuki, Y.3
Sugiura, M.4
|