A 68-nucleotide sequence within the 3' noncoding region of simian hemorrhagic fever virus negative-strand RNA binds to four MA104 cell proteins

Journal of Virology

Volumn 72, Issue 5, 1998, Pages 4341-4351

  Hwang, You Kyung ^a   Brinton, Margo A ^a  

^a GEORGIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; BINDING SITE; NAIRO VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN RNA BINDING; RHESUS MONKEY; VIRUS REPLICATION;

EID: 0031968676     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.72.5.4341-4351.1998     Document Type: Article

References (66)

1. Andino, R., G. E. Rieckhof, and D. Baltimore. 1990. A functional ribonucleoprotein complex forms around the 5′ end of poliovirus RNA. Cell 63:369-380.
2. Barton, D. J., E. P. Black, and J. B. Flanegan. 1995. Complete replication of poliovirus in vitro: preinitiation RNA replication complexes require soluble cellular factors for the synthesis of Vpg-linked RNA. J. Virol. 69:5516-5527.
3. Barton, D. J., S. G. Sawicki, and D. L. Sawicki. 1991. Solubilization and immunoprecipitation of alphavirus replication complexes. J. Virol. 65:1496-1506.
4. Blackwell, J. L., and M. A. Brinton. 1995. BHK cell proteins that bind to the 3′ stem-loop structure of the West Nile virus genome RNA. J. Virol. 69: 5650-5658.
5. Blackwell, J. L., and M. A. Brinton. 1997. Translation elongation factor-1 alpha interacts with the 3′ stem-loop region of West Nile virus genomic RNA. J. Virol. 71:6433-6444.
6. Brinton, M. A. 1982. Lactate dehydrogenase-elevating virus, p. 194-208. In H. L. Foster, J. D. Small, and J. G. Fox (ed.), The Mouse in biomedical Research, vol. 2. Academic Press, New York, N.Y.
7. Brinton, M. A., T. R. Maines, H. H. Starling, L. Chen, S. Methven, and S. Kumar. Unpublished data.
8. Brinton-Darnell, M., and P. G. W. Plagemann. 1975. Structure and chemical-physical characteristics of lactate dehydrogenase-elevating virus and its RNA. J. Virol. 16:420-433.
9. Cavanagh, D. 1997. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch. Virol. 142:629-633.
10. D'Alessio, J. A. 1982. RNA sequencing, p. 173-197. In D. Rickwood and B. D. Hames (ed.), Gel electrophoresis of nucleic acids. IRL Press, Oxford, England.
11. den Boon, J. A., E. J. Snijder, E. D. Chirnside, A. A. F. De Vries, M. C. Horzinek, and W. J. M. Spaan. 1991. Equine arteritis virus is not a togavirus but belongs to the coronavirus-like superfamily. J. Virol. 65:2910-2920.
12. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
13. Doll, E. R., J. T. Bryans, W. H. M. McCollum, and M. Crowe. 1957. Isolation of a filterable agent causing arteritis of horses and abortion by mares. Its differentiation from the equine abortion (influenza) virus. Cornell Vet. 47: 3-41.
14. Furuya, T., and M. M. C. Lai. 1993. Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA. J. Virol. 67:7215-7222.
15. Godeny, E. K., L. Chen, S. N. Kumar, S. L. Methven, E. V. Koonin, and M. A. Brinton. 1993. Complete genomic sequence and phylogenetic analysis of lactate dehydrogenase-elevating virus (LDV). Virology 194:585-596.
16. Godeny, E. K., L. Zeng, S. L. Smith, and M. A. Brinton. 1995. Molecular characterization of the 3′ terminus of the simian hemorrhagic fever virus genome. J. Virol. 69:2679-2683.
17. Gravell, M., W. T. London, M. E. Leon, A. E. Palmer, and R. S. Hamilton. 1986. Differences among isolates of simian hemorrhagic fever (SHF) virus. Proc. Soc. Exp. Biol. Med. 181:112-119.
18. Gutierrez-Escolano, A. L., F. Medina, V. R. Racaniello, and R. M. Del Angel. 1997. Differences in the UV-crosslinking patterns of the poliovirus 5′-untranslated region with cell proteins from poliovirus-susceptible and resistant tissues. Virology 227:505-508.
19. Hayes, C. G., J. P. Burans, T. G. Ksiazek, R. A. Del Rosario, M. E. G. Miranda, C. R. Manaloto, A. B. Barrientos, C. G. Robles, M. M. Dayrit, and C. J. Peters. 1992. Outbreak of fatal illness among captive macaques in the Philippines caused by an Ebola-related filovirus. Am. J. Trop. Med. Hyg. 46: 664-671.
20. Hayes, R. J., and K. W. Buck. 1990. Complete replication of a eukaryotic virus RNA in vitro by a purified RNA-dependent RNA polymerase. Cell 63: 363-368.
21. Hill, H. 1990. Overview and history of mystery swine disease (swine infertility and respiratory syndrome), p. 29-30. In Proceedings of the mystery swine disease committee meeting, Denver, Coo. Livestock Conservation Institute, Madison, Wis.
22. Holmes, K. V., and M. M. C. Lai. 1996. Coronaviridae: the viruses and their replication, p. 1075-1093. In B. N. Fields, D. M. Knipe, P. M. Howley, et al. (ed.), Virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
23. Horzinek, M. C., J. Maess, and R. Laufs. 1971. Studies on the substructure of togaviruses. II. Analysis of equine arteritis, rubella, bovine viral diarrhea and hog cholera viruses. Arch. Gesamte Virusforsch. 33:306-318.
24. 23a. Hwang, Y.-K., and M. Brinton. Unpublished data.
25. Jahrling, P. B., T. W. Geisbert, D. W. Dalgard, E. D. Johnson, T. G. Ksiazek, W. C. Hall, and C. J. Peters. 1990. Preliminary report: isolation of Ebola virus from monkeys imported to U.S.A. Lancet 335:502-505.
26. Joshi, R. L., J. M. Ravel, and A. L. Haenni. 1986. Interaction of turnip yellow mosaic virus val-tRNA with eukaryotic elongation factor EF-1a. Search for a function. EMBO J. 5:1143-1148.
27. Konings, D. A. M., and R. R. Gutell. 1995. A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs. RNA 1:559-574.
28. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680-685.
29. Lai, M. M. C. 1990. Coronavirus: organization, replication and expression of genome. Annu. Rev. Microbiol. 44:303-333.
30. Lai, M. M. C., R. S. Baric, P. R. Brayton, and S. A. Stohlman. 1984. Characterization of leader RNA sequences on the virion and mRNAs of mouse hepatitis virus, a cytoplasmic RNA virus. Proc. Natl. Acad. Sci. USA 81:3626-3630.
31. Landers, T. A., T. Blumenthal, and K. Weber. 1974. Function and structure in ribonucleic acid phage Qβ ribonucleic acid replicase. The roles of the different subunits in transcription of synthetic templates. J. Biol. Chem. 249: 5801-5808.
32. Li, H.-P., X. Zhang, R. Duncan, L. Comai, and M. M. C. Lai. 1997. Heterogeneous nuclear ribonucleoprotein A1 binds to the transcription-regulatory region of mouse hepatitis virus RNA. Proc. Natl. Acad. Sci. USA 94:9544-9549.
33. London, W. T. 1977. Epizootiology, transmission and approach to prevention of fatal simian haemorrhagic fever virus in rhesus monkeys. Nature (London) 268:344-345.
34. 32a. Melchers, W. J. G., J. G. J. Hoenderop, H. J. Bruins Slot, C. W. A. Pleij, E. V. Pilipenko, V. I. Agol, and J. M. D. Galama. 1997. Kissing of the two pre-dominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. J. Virol. 71:686-696.
35. Meulenberg, J. J. M., E. J. de Meijer, and R. J. M. Moormann. 1993. Subgenomic RNAs of Lelystad virus contain a conserved leader-body junction sequence. J. Gen. Virol. 74:1697-1701.
36. Nakhasi, H. L., T. A. Rouault, D. J. Haile, T. Y. Lui, and R. D. Klausner. 1990. Specific high-affinity binding of host cell proteins to the 3′ region of rubella virus RNA. New Biol. 2:255-264.
37. O'Neill, R., and P. Palese. 1994. Cis-acting signals and trans-acting factors involved in influenza virus RNA synthesis. Infect. Agents Dis. 3:77-84.
38. Palmer, A. E., A. M. Allen, N. M. Tauraso, and A. Shelokov. 1968. Simian hemorrhagic fever. I. Clinical and epizootiologic aspects of an outbreak among quarantined monkeys. Am. J. Trop. Med. Hyg. 17:404-412.
39. Pan, T., and M. Jakacka. 1996. Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P. EMBO J. 15:2249-2255.
40. Pardigon, N., and J. H. Strauss. 1992. Cellular proteins bind to the 3′ end of Sindbis virus minus-strand RNA. J. Virol. 66:1007-1015.
41. Pardigon, N., and J. H. Strauss. 1996. Mosquito homolog of the La autoantigen binds to Sindbis virus RNA. J. Virol. 70:1173-1181.
42. Plagemann, P. G. W. 1996. Lactate dehydrogenase-elevating virus and related viruses, p. 1105-1120. In B. N. Fields, D. M. Knipe, P. M. Howley, et al. (ed.), Virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
43. Plagemann, P. G. W., and V. Moennig. 1992. Lactate dehydrogenase-elevating virus, equine arteritis virus, and simian hemorrhagic fever virus: a new group of positive-strand RNA viruses. Adv. Virus Res. 41:99-192.
44. Quadt, R., C. C. Kao, K. S. Browning, R. P. Hershberger, and P. Ahlquist. 1993. Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. USA 90:1498-1502.
45. Risco, C., I. M. Anton, L. Enjuanes, and J. L. Carrascosa. 1996. The transmissible gastroenteritis coronavirus contains a spherical core shell consisting of M and N proteins. J. Virol. 70:4773-4777.
46. Rivera, V. M., J. D. Welsh, and J. V. Maizel. 1988. Comparative sequence analysis of the 5′ noncoding region of the enteroviruses and rhinoviruses. Virology 165:42-50.
47. Sagripanti, J. L. 1984. The genome of simian hemorrhagic fever virus. Arch. Virol. 82:61-72.
48. Sagripanti, J. L., R. O. Zandomeni, and R. Weinmann. 1986. The cap structure of simian hemorrhagic fever viron RNA. Virology 151:146-150.
49. Sawicki, S. G., and D. L. Sawicki. 1990. Coronavirus transcription: subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis. J. Virol. 64:1050-1056.
50. Shi, P. Y., W. Li, and M. A. Brinton. 1996. Cell proteins bind specifically to West Nile virus minus-strand 3′ stem-loop RNA. J. Virol. 70:6278-6287.
51. Singh, N. K., C. D. Atreya, and H. L. Nakhasi. 1994. Identification of calreticulin as a rubella virus RNA binding protein. Proc. Natl. Acad. Sci. USA 91:12770-12774.
52. Smith, S. L., X. C. Wang, and E. K. Godeny. 1997. Sequence of the 3′ end of the simian hemorrhagic fever virus genome. Gene 191:205-210.
53. Soe, L. H., C. K. Shieh, S. Makino, M. F. Chang, S. A. Stohlman, and M. M. C. Lai. 1987. Murine coronavirus 5′ end genomic RNA sequence reveals mechanism of leader-primed transcription. Adv. Exp. Med. Biol. 218: 73-81.
54. Sriskanda, V. S., G. Pruss, X. Ge, and V. B. Vance. 1996. An eight-nucleotide sequence in the potato virus X 3′ untranslated region is required for both host protein binding and viral multiplication. J. Virol. 70:5266-5271.
55. Sturmann, L. S., and K. V. Holmes. 1977. Characterization of a coronavirus. II. Glycoproteins of the viral envelope: tryptic peptide analysis. Virology 77: 650-660.
56. Tang, C. K., and D. E. Draper. 1989. Unusual mRNA pseudoknot structure is recognized by a protein translational repressor. Cell 57:531-536.
57. Tauraso, N. M., A. Shelokov, A. E. Palmer, and A. M. Allen. 1968. Simian hemorrhagic fever. III. Isolation and characterization of a viral agent. Am. J. Trop. Med. Hyg. 17:422-431.
58. Trousdale, M. D., D. W. Trent, and A. Shelokov. 1975. Simian hemorrhagic fever virus: a new togavirus. Proc. Soc. Exp. Biol. Med. 150:707-711.
59. van der Most, R. G., and W. J. M. Spaan. 1995. Coronavirus replication, transcription, and RNA recombination, p. 11-31. In S. G. Siddell (ed.), The Coronaviridae. Plenum Press, New York, N.Y.
60. Wilusz, K. M., M. G. Kurilla, and J. D. Keene. 1983. A host protein (La) binds to a unique species of minus-sense leader RNA during replication of vesicular stomatitis virus. Proc. Natl. Acad. Sci. USA 80:5827-5831.
61. Yu, W., and J. L. Leibowitz. 1995. Specific binding of host cellular proteins to multiple sites within the 3′ end of mouse hepatitis virus genomic RNA. J. Virol. 69:2016-2023.
62. Yu, W., and J. L. Leibowitz. 1995. A conserved motif at the 3′ end of mouse hepatitis virus genomic RNA required for host protein binding and viral RNA replication. Virology 214:128-138.
63. Zeng, L., E. K. Godeny, S. L. Methven, and M. A. Brinton. 1995. Analysis of simian hemorrhagic fever virus (SHFV) subgenomic RNAs, junction sequences, and 5′ leader. Virology 207:543-548.
64. Zhang, X. M., and M. M. C. Lai. 1994. Unusual heterogeneity of leader-mRNA fusion in a murine coronavirus: implications for the mechanism of RNA transcription and recombination. J. Virol. 68:6626-6633.
65. Zhang, X., and M. C. Lai. 1995. Interactions between the cytoplasmic proteins and the intergenic (promoter) sequence of mouse hepatitis virus RNA: correlation with the amounts of subgenomic mRNA transcribed. J. Virol. 69: 1637-1644.
66. Zuker, M., and P. Stiegler. 1981. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9:133-148.