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Volumn 4, Issue 1, 1998, Pages 112-123

In vitro selection and characterization of streptomycin-binding RNAs: Recognition discrimination between antibiotics

Author keywords

Antibiotics; Mg2+; RNA aptamers

Indexed keywords

BLUENSOMYCIN; DIMETHYL SULFATE; KETOXAL; MAGNESIUM ION; RIBOSOME DNA; RNA; STREPTOMYCIN;

EID: 0031965013     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (109)

References (38)
  • 1
    • 0021241894 scopus 로고
    • Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: Implications for biological catalysis by RNA
    • Bass BL, Cech TR. 1984. Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: Implications for biological catalysis by RNA. Nature 305:820-826.
    • (1984) Nature , vol.305 , pp. 820-826
    • Bass, B.L.1    Cech, T.R.2
  • 2
    • 0023047647 scopus 로고
    • Ribozyme inhibitors: Deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor
    • Bass BL, Cech TR. 1986. Ribozyme inhibitors: Deoxyguanosine and dideoxyguanosine are competitive inhibitors of self-splicing of the Tetrahymena ribosomal ribonucleic acid precursor. Biochemistry 25:4473-4477.
    • (1986) Biochemistry , vol.25 , pp. 4473-4477
    • Bass, B.L.1    Cech, T.R.2
  • 3
    • 0003017978 scopus 로고
    • Structure and mechanism of the large catalytic RNAs: Group I and Group II introns and ribonuclease P
    • Gesteland RF, Atkins JA, eds. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
    • Cech TR. 1993. Structure and mechanism of the large catalytic RNAs: Group I and Group II introns and ribonuclease P. In: Gesteland RF, Atkins JA, eds. The RNA world. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp 239-269.
    • (1993) The RNA World , pp. 239-269
    • Cech, T.R.1
  • 4
    • 0029959406 scopus 로고    scopus 로고
    • Selecting apt RNAs for NMR
    • Cech TR, Szewczak AA. 1996. Selecting apt RNAs for NMR. RNA 2:625-627.
    • (1996) RNA , vol.2 , pp. 625-627
    • Cech, T.R.1    Szewczak, A.A.2
  • 5
    • 0014161806 scopus 로고
    • Structure-activity relationship among the aminoglycoside antibiotics
    • Davies J. 1967. Structure-activity relationship among the aminoglycoside antibiotics. Antimicrob Agents & Chemother 7:297-303.
    • (1967) Antimicrob Agents & Chemother , vol.7 , pp. 297-303
    • Davies, J.1
  • 7
    • 0002751916 scopus 로고
    • Misreading of RNA code words induced by aminoglycoside antibiotics
    • Davies J, Gorini L, Davis BD. 1965. Misreading of RNA code words induced by aminoglycoside antibiotics. Mol Pharmacol 1:93-106.
    • (1965) Mol Pharmacol , vol.1 , pp. 93-106
    • Davies, J.1    Gorini, L.2    Davis, B.D.3
  • 8
    • 0029379551 scopus 로고
    • Let's get specific: The relationship between specificity and affinity
    • Eaton BE, Gold L, Zichi DA. 1995. Let's get specific: The relationship between specificity and affinity. Chemistry & Biology 2:633-638.
    • (1995) Chemistry & Biology , vol.2 , pp. 633-638
    • Eaton, B.E.1    Gold, L.2    Zichi, D.A.3
  • 9
    • 0028011717 scopus 로고
    • Molecular recognition of amino acids by RNA-aptamers: An L-citrulline binding RNA motif and its evolution into an L-arginine binder
    • Famulok M. 1994. Molecular recognition of amino acids by RNA-aptamers: An L-citrulline binding RNA motif and its evolution into an L-arginine binder. J Am Chem Soc 116:1698-1706.
    • (1994) J Am Chem Soc , vol.116 , pp. 1698-1706
    • Famulok, M.1
  • 10
    • 0029943824 scopus 로고    scopus 로고
    • In vitro selection analysis of neomycin binding RNAs with a mutagenized pool of variants of the 16S rRNA decoding region
    • Famulok M, Huttenhofer A. 1996. In vitro selection analysis of neomycin binding RNAs with a mutagenized pool of variants of the 16S rRNA decoding region. Biochemistry 35:4265-4270.
    • (1996) Biochemistry , vol.35 , pp. 4265-4270
    • Famulok, M.1    Huttenhofer, A.2
  • 11
    • 0029825658 scopus 로고    scopus 로고
    • Structure of the a site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic
    • Fourmy D, Recht MI, Blanchard SC, Puglisi JD. 1996. Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic. Science 274:1367-1371.
    • (1996) Science , vol.274 , pp. 1367-1371
    • Fourmy, D.1    Recht, M.I.2    Blanchard, S.C.3    Puglisi, J.D.4
  • 12
    • 0002599277 scopus 로고
    • Streptomycin and misreading of the genetic code
    • Nomura M, Tissieres A, Lengyel P, eds. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
    • Gorini L. 1974. Streptomycin and misreading of the genetic code. In: Nomura M, Tissieres A, Lengyel P, eds. Ribosomes. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp 791-804.
    • (1974) Ribosomes , pp. 791-804
    • Gorini, L.1
  • 13
    • 0024564403 scopus 로고
    • Use of lead(II) to probe the structure of large RNAs. Conformation of the 3′ terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites
    • Gornicki P, Baudin F, Romby P, Wiewiorowski M, Kryzosiak W, Ebel JP, Ehresmann C, Ehresmann B. 1989. Use of lead(II) to probe the structure of large RNAs. Conformation of the 3′ terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites. J Biomol Struct & Dynam 6:971-984.
    • (1989) J Biomol Struct & Dynam , vol.6 , pp. 971-984
    • Gornicki, P.1    Baudin, F.2    Romby, P.3    Wiewiorowski, M.4    Kryzosiak, W.5    Ebel, J.P.6    Ehresmann, C.7    Ehresmann, B.8
  • 14
    • 0030985913 scopus 로고    scopus 로고
    • Direct observation of aminoglycoside-RNA interactions by surface plasmon resonance
    • Hendrix M, Priestley ES, Joyce GF, Wong CH. 1997. Direct observation of aminoglycoside-RNA interactions by surface plasmon resonance. J Am Chem Soc 119:3641-3648.
    • (1997) J Am Chem Soc , vol.119 , pp. 3641-3648
    • Hendrix, M.1    Priestley, E.S.2    Joyce, G.F.3    Wong, C.H.4
  • 15
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison RD, Gill SC, Pardi A, Polisky B. 1994. High-resolution molecular discrimination by RNA. Science 263:1425-1429.
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 16
    • 0343882626 scopus 로고    scopus 로고
    • Structural basis of RNA folding and recognition in the AMP-RNA aptamer complex
    • Jiang F, Kumar RA, Jones RA, Patel DJ. 1996. Structural basis of RNA folding and recognition in the AMP-RNA aptamer complex. Nature 352:171-174.
    • (1996) Nature , vol.352 , pp. 171-174
    • Jiang, F.1    Kumar, R.A.2    Jones, R.A.3    Patel, D.J.4
  • 17
    • 0030887815 scopus 로고    scopus 로고
    • Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex
    • Jiang L, Suri AK, Fiala R, Patel DJ. 1997. Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex. Chemistry & Biology 4:35-50.
    • (1997) Chemistry & Biology , vol.4 , pp. 35-50
    • Jiang, L.1    Suri, A.K.2    Fiala, R.3    Patel, D.J.4
  • 18
    • 0029294685 scopus 로고
    • In vitro selection of RNA lectins: Using combinatorial chemistry to interpret ribozyme evolution
    • Lato SM, Boles AR, Ellington AD. 1995. In vitro selection of RNA lectins: Using combinatorial chemistry to interpret ribozyme evolution. Chemistry & Biology 2:291-303.
    • (1995) Chemistry & Biology , vol.2 , pp. 291-303
    • Lato, S.M.1    Boles, A.R.2    Ellington, A.D.3
  • 19
    • 0023689711 scopus 로고
    • A mutation in the 530 loop of Escherichia coli 16S ribosomal RNA causes resistance to streptomycin
    • Melancon P, Lemieux C, Brakier-Gingras L. 1988. A mutation in the 530 loop of Escherichia coli 16S ribosomal RNA causes resistance to streptomycin. Nucleic Acids Res 16:9631-9639.
    • (1988) Nucleic Acids Res , vol.16 , pp. 9631-9639
    • Melancon, P.1    Lemieux, C.2    Brakier-Gingras, L.3
  • 21
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites on 16S ribosomal RNA
    • Moazed D, Noller HF. 1987. Interaction of antibiotics with functional sites on 16S ribosomal RNA. Nature 327:389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 22
    • 0023054135 scopus 로고
    • E. coli ribosomes with a C912 to U base change in the 16S rRNA are streptomycin resistant
    • Montandon PE, Wagner R, Stutz E. 1986. E. coli ribosomes with a C912 to U base change in the 16S rRNA are streptomycin resistant. EMBO J 5:3705-3708.
    • (1986) EMBO J , vol.5 , pp. 3705-3708
    • Montandon, P.E.1    Wagner, R.2    Stutz, E.3
  • 23
    • 0003156250 scopus 로고
    • Divalent metal ions in RNA folding and catalysis
    • Gesteland RF, Atkins JF, eds. Plainview, New York: Cold Spring Harbor Laboratory Press
    • Pan T, Long DM, Uhlenbeck OC. 1993. Divalent metal ions in RNA folding and catalysis. In: Gesteland RF, Atkins JF, eds. The RNA world. Plainview, New York: Cold Spring Harbor Laboratory Press, pp 271-302.
    • (1993) The RNA World , pp. 271-302
    • Pan, T.1    Long, D.M.2    Uhlenbeck, O.C.3
  • 24
    • 0040141562 scopus 로고
    • RNA codewords and protein synthesis. Effects of streptomycin on the formation of ribosome-tRNA complexes
    • Pestka S, Marshall R, Nirenberg M. 1965. RNA codewords and protein synthesis. Effects of streptomycin on the formation of ribosome-tRNA complexes. Proc Natl Acad Sci USA 53:639-646.
    • (1965) Proc Natl Acad Sci USA , vol.53 , pp. 639-646
    • Pestka, S.1    Marshall, R.2    Nirenberg, M.3
  • 25
    • 0028138280 scopus 로고
    • Interactions of a small RNA with antibiotics and RNA ligands of the 30S subunit
    • Purohit P, Stern S. 1994. Interactions of a small RNA with antibiotics and RNA ligands of the 30S subunit. Nature 370:659-662.
    • (1994) Nature , vol.370 , pp. 659-662
    • Purohit, P.1    Stern, S.2
  • 26
    • 0025828645 scopus 로고
    • Effects of mutations of the bulged nucleotide in the conserved P7 pairing element of the phage T4 td intron on ribozyme function
    • Schroeder R, von Ahsen U, Beifort M. 1991. Effects of mutations of the bulged nucleotide in the conserved P7 pairing element of the phage T4 td intron on ribozyme function. Biochemistry 30:3295-3303.
    • (1991) Biochemistry , vol.30 , pp. 3295-3303
    • Schroeder, R.1    Von Ahsen, U.2    Beifort, M.3
  • 28
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • Stern S, Moazed D, Noller HF. 1988. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol 164:481-489.
    • (1988) Methods Enzymol , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 29
    • 0027242380 scopus 로고
    • Footprinting the sites of interaction of antibiotics with catalytic group I intron RNA
    • von Ahsen U, Noller HF. 1993. Footprinting the sites of interaction of antibiotics with catalytic group I intron RNA. Science 260:1500-1503.
    • (1993) Science , vol.260 , pp. 1500-1503
    • Von Ahsen, U.1    Noller, H.F.2
  • 30
    • 0025892658 scopus 로고
    • Streptomycin inhibits splicing of group I introns by competition with the guanosine substrate
    • von Ahsen U, Schroeder R. 1991. Streptomycin inhibits splicing of group I introns by competition with the guanosine substrate. Nucleic Acids Res 19:2261-2265.
    • (1991) Nucleic Acids Res , vol.19 , pp. 2261-2265
    • Von Ahsen, U.1    Schroeder, R.2
  • 33
    • 0026517751 scopus 로고
    • Tertiary structure around the guanosine-binding site of the Tetrahymena ribozyme
    • Wang JF, Cech TR. 1992. Tertiary structure around the guanosine-binding site of the Tetrahymena ribozyme. Science 256:526-529.
    • (1992) Science , vol.256 , pp. 526-529
    • Wang, J.F.1    Cech, T.R.2
  • 34
    • 0029294539 scopus 로고
    • Specific binding of aminoglycoside antibiotics to RNA
    • Wang Y, Rando RR. 1995. Specific binding of aminoglycoside antibiotics to RNA. Chemistry & Biology 2:281-290.
    • (1995) Chemistry & Biology , vol.2 , pp. 281-290
    • Wang, Y.1    Rando, R.R.2
  • 35
    • 0028316436 scopus 로고
    • Peptide antibiotics of the tuberactinomycin family as inhibitors of group I intron RNA splicing
    • Wank H, Rogers J, Davies J, Schroeder R. 1994. Peptide antibiotics of the tuberactinomycin family as inhibitors of group I intron RNA splicing. J Mol Biol 236:1001-1010.
    • (1994) J Mol Biol , vol.236 , pp. 1001-1010
    • Wank, H.1    Rogers, J.2    Davies, J.3    Schroeder, R.4
  • 36
    • 0024295779 scopus 로고
    • A specific amino acid binding site composed of RNA
    • Yarus M. 1988. A specific amino acid binding site composed of RNA. Science 240:1751-1758.
    • (1988) Science , vol.240 , pp. 1751-1758
    • Yarus, M.1
  • 37
    • 0030752211 scopus 로고    scopus 로고
    • Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA
    • Zimmermann GR, Jenison RD, Wick CL, Simone J-P, Pardi A. 1997. Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA. Nature Struct Biol 4:644-649.
    • (1997) Nature Struct Biol , vol.4 , pp. 644-649
    • Zimmermann, G.R.1    Jenison, R.D.2    Wick, C.L.3    Simone, J.-P.4    Pardi, A.5
  • 38
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.