Structure and function of bacterial cytochrome c oxidase

Journal of Biochemistry

Volumn 123, Issue 3, 1998, Pages 369-375

  Iwata, So ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

Cytochrome c oxidase; Membrane protein; Quinol oxidase; Three dimensional structure; X ray crystallography

Indexed keywords

BACTERIAL ENZYME; CYTOCHROME C OXIDASE; MEMBRANE ENZYME; MEMBRANE PROTEIN; PROTON PUMP;

CRYSTAL STRUCTURE; ENZYME STRUCTURE; ENZYME SUBUNIT; NONHUMAN; OXIDATION REDUCTION REACTION; PARACOCCUS DENITRIFICANS; RESPIRATORY CHAIN; REVIEW; SITE DIRECTED MUTAGENESIS; SOIL MICROFLORA; X RAY CRYSTALLOGRAPHY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PARACOCCUS DENITRIFICANS;

EID: 0031935710     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a021946     Document Type: Review

References (54)

1. Iwata, S., Ostermeier, C., Ludwig, B., and Michel, H. (1995) Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376, 660-669
2. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1995) Structure of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 Å. Science 269, 1069-1074
3. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å. Science 272, 1136-1144
4. Gohlke, U., Warne, A., and Saraste, M. (1997) Projection-structure of the cytochrome bo ubiquinol oxidase from Escherichia coli at 6 Å resolution. EMBO J. 16, 1181-1188
5. Ostermeier, C., Harrenga, A., Ermler, U., and Michel, H. (1997) Structure at 2.7 Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody Fv fragment. Proc. Natl. Acad. Sci. USA 94, 10547-10553
6. Garcia-Horseman, J.A., Barquera, B., Rumbley, J., Ma, J., and Gennis, R.B. (1994) The superfamily of heme-copper respiratory oxidases. J. Bacteriol. 176, 5587-5600
7. Calhoun, M.W., Thomas, J.W., and Gennis, R.B. (1994) The cytochrome oxidase superfamily of redox driven proton pump. Trends Biochem. Sci. 19, 325-330
8. Castresana, J. and Saraste, M. (1995) Evolution of energetic metabolism: the respiration-early hypothesis. Trends Biochem. Sci. 20, 443-448
9. Castresana, J., Lübben, M., Saraste, M., and Higgins, D.G. (1994) Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. EMBO J. 13, 2516-2525
10. Zumft, W.C. and Kroneck, P.M.H. (1996) Metal-center assembly at the bacterial multicopper enzyme nitrous oxide reductase. Adv. Inorg. Biochem. 11, 193-221
11. Hill, B.C. (1994) Modeling the sequence of electron transfer reactions in the single turnover of reduced, mammalian cytochrome c oxidase. J. Biol. Chem. 269, 2919-2425
12. Wilmanns, M., Lappalainen, P., Kelly, M., Sauer-Eriksson, E., and Saraste, M. (1995) Crystal structure of the membrane-exposed domain from a respiratory quinol oxidase complex with an engineered dinuclear copper center. Proc. Natl. Acad. Sci. USA 92, 11955-11959
13. Beinert, H. (1995) Crystals and structures of cytochrome c oxidases - The end of an arduous road. Chem. Biol. 2, 781-785
14. Ramirez, B.E., Malmström, B.G., Winkler, J.R., and Gray, H.B. (1995) The currents of life: the terminal electron-transfer complex of respiration. Proc. Natl. Acad. Sci. USA 92, 11949-119511
15. Gennis, R.B. and Ferguson-Miller, S. (1996) Proton-pumping oxidases. Curr. Biol. 6, 36-38
16. Scott, R.A. (1995) Functional significance of cytochrome c oxidase structure. Structure 3, 981-986
17. Ostermeier, C., Iwata, S., and Michel, H. (1996) Cytochrome c oxidase. Curr. Opin. Struct. Biol. 6, 460-466
18. Yoshikawa, S. (1997) Beef heart cytochrome c oxidase. Curr. Opin. Struct. Biol. 7, 574-579
19. Ferguson-Miller, S. and Babcock, G.T. (1996) Heme/copper terminal oxidases. Chem. Rev. 96, 2889-2907
20. Saraste, M. (1990) Structural features of cytochrome oxidase. Q. Rev. Biophys. 23, 331-366
21. Malatesta, F., Antonini, G., Sarti, P., and Brunori, M. (1995) Structure and function of a molecular machine: cytochrome c oxidase. Biophys. Chem. 54, 1-33
22. Ostermeier, C., Iwata, S., Ludwig, B., and Michel, H. (1995) Fv fragment-mediated crystallization of the membrane protein bacterial cytochrome c oxidase. Nature Struct. Biol. 2, 842-846
23. Haltia, T. (1992) Cytochrome c oxidase: Biochemical, genetic and spectroscopic studies using the enzyme from Paracoccus denitrificans. Comment. Phys.-Mathemat. Chem.-Med. 136, 55-56
24. Saiki, K., Mogi, T., Tsubaki, M., Hori, H., and Anraku, Y. (1997) Exploring subunit-subunit interactions in the Escherichia coli bo-type ubiquinol oxidase by extragenic suppressor mutation analysis. J. Biol. Chem. 272, 14721-14726
25. Haltia, T., Semo, N., Arrondo, J.L., Goni, F.M., and Freire, E. (1994) Thermodynamic and structural stability of cytochrome c oxidase from Paracoccus denitrificans. Biochemistry 33, 9731-9740
26. Haltia, T., Saraste, M., and Wikström, M. (1991) Subunit III of cytochrome c oxidase is not involved in proton translocation: a site-directed mutagenesis study. EMBO J. 10, 2015-2021
27. Riistama, S., Puustinen, A., Garcia-Horsman, A., Iwata, S., Michel, H., and Wikström, M. (1996) Channeling of dioxygen into the respiratory enzyme. Biochim. Biophys. Acta 1275, 1-4
28. A domains. Proc. Natl. Acad. Sci. USA 92, 7167-7171
29. A centre from the cytochrome-c oxidase complex of Paracoccus denitrificans. Eur. J. Biochem. 232, 294-303
30. A center of cytochrome oxidase. Biochemistry 33, 10401-10407
31. B center. Angew. Chem. Int. Ed. Engl. 34, 1488-1492
32. Hosler, J.P., Espe, M.P., Zhen, Y., Babcock, G.T., and Ferguson-Miller, S. (1995) Analysis of site-directed mutants locates a non-redox-active metal near the active site of cytochrome c oxidase of Rhodobacter sphaeroides. Biochemistry 34, 7586-7592
33. 2+-binding of Paracoccus denitrificans cytochrome c oxidase. FEBS Lett. 409, 128-130
34. B promotes both binding and reduction of dioxygen at the heme-copper binuclear center in the Escherichia coli bo-type ubiquinol oxidase. FEBS Lett. 370, 259-263
35. 3-type quinol oxidase from Bacillus subtilis: an ENDOR and EXAFS study. Biochemistry 34, 10245-10255
36. B center. FEBS Lett. 374, 371-374
37. Verkhovsky, M., Morgan, J.E., Puustinen, A., and Wikström, M. (1996) Kinetic trapping of oxygen in cell respiration. Nature 380, 268-270
38. Babcock, G.T. and Wikström, M. (1992) Oxygen activation and the conservation of energy in cell respiration. Nature 356, 301-309
39. Hallén, S., Brzezinski, P., and Malmström, B.G. (1994) Internal electron transfer in cytochrome c oxidase is coupled to the protonation of a group close to the bimetallic site. Biochemistry 33, 1467-1472
40. Verkhovsky, M., Morgan, J.E., and Wikström, M. (1995) Control of electron delivery to the oxygen reduction site of cytochrome c oxidase: a role for protons. Biochemistry 34, 7483-7491
41. Einarsdóttir, Ó. (1995) Fast reactions of cytochrome oxidase. Biochim. Biophys. Acta 1229, 129-147
42. Wikström, M. (1989) Identification of the electron transfers in cytochrome oxidase that are coupled to proton pumping. Nature 338, 776-778
43. Mitchell, R. and Rich, P.R. (1994) Proton uptake by cytochrome c oxidase on reduction and on ligand binding. Biochim. Biophys. Acta 1186, 19-26
44. Rich, P.R. (1995) Towards an understanding of the chemistry of oxygen reduction and proton translocation in the iron-copper respiratory oxidases. Aust. J. Plant Physiol. 22, 479-486
45. Musser, S.M. and Chan, S.I. (1995) Understanding the cytochrome c oxidase proton pump: thermodynamics of redox linkage. Biophys. J. 68, 2543-2555
46. Einarsdóttir, Ó., Georgiadis, K.E., and Sucheta, A. (1995) Intramolecular electron transfer and conformational changes in cytochrome c oxidase. Biochemistry 34, 496-508
47. Morgan, J.E., Verkhovsky, M.I., and Wikström, M. (1994) The histidine cycle: a new model for proton translocation in the respiratory heme-copper oxidases. J. Bioenerg. Biomembr. 26, 599-608
48. Thomas, J.W., Lemieux, L.J., Alben, J.O., and Gennis, R.B. (1993) Site-directed mutagenesis of highly conserved residues in helix VIII of subunit I of the cytochrome bo ubiquinol oxidase from Escherichia coli: an amphipathic transmembrane helix that may be important in conveying protons to the binuclear center. Biochemistry 32, 11173-11180
49. 3 ubiquinol oxidase of Escherichia coli: second-site mutations in subunit I that restore proton pumping in the mutant Asp135→Asn. Biochemistry 34, 4428-4433
50. Thomas, J.W., Puustinen, A., Alben, J.O., Gennis, R.B., and Wikström, M. (1993) Substitution of asparagine for aspartate-135 in subunit I of the cytochrome bo ubiquinol oxidase of Escherichia coli eliminates proton-pumping activity. Biochemistry 32, 10923-10928
51. Fetter, J.R., Qian, J., Shapleigh, J., Thomas, J.W., García-Horsman, J.A., Schmidt, E., Hosler, J., Babcock, G.T., and Gennis, R.B. (1995) Possible proton relay pathways in cytochrome c oxidase. Proc. Natl. Acad. Sci. USA 92, 1604-1608
52. Hosler, J.P., Shapleigh, J.P., Mitchell, D.C., Kim, Y., Pressler, M., Georgiou, C., Babcock, G.T., Alben, J.O., Ferguson-Miller, S., and Gennnis, R.B. (1996) Polar residues in helix VIII of subunit I of cytochrome c oxidase influence the activity and the structure of the active site. Biochemistry 35, 10776-10783
53. Riistama, S., Hummer, G., Puustinen, A., Dyer, R.B., Woodruff, W.H., and Wikström, M. (1997) Bound water in the proton translocation mechanism of the haem-copper oxidases. FEBS Lett. 41, 275-280
54. Fabian, A. and Palmer, G. (1995) The interaction of cytochrome oxidase with hydrogen peroxide: the relationship of compounds P and F. Biochemistry 34, 13802-13810