Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho

Current Microbiology

Volumn 36, Issue 3, 1998, Pages 158-163

  Clark, Marta A ^a   Baumann, Linda ^a   Baumann, Paul ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DNA FRAGMENT;

APHID; ARTICLE; DNA DETERMINATION; ESCHERICHIA COLI; GENE SEQUENCE; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROKARYOTE; SEQUENCE HOMOLOGY; SYMBIOSIS;

ALGAL PROTEINS; ANIMALS; APHIDS; BACTERIA; BACTERIAL PROTEINS; CHROMOSOME MAPPING; CODON; DNA-BINDING PROTEINS; GENES, BACTERIAL; GENOME, BACTERIAL; GROEL PROTEIN; GTP-BINDING PROTEINS; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; OPERON; PLANT PROTEINS; PROMOTER REGIONS (GENETICS); PROTON-TRANSLOCATING ATPASES; REPLICATION ORIGIN; RHOB GTP-BINDING PROTEIN; SEQUENCE ANALYSIS, DNA; TERMINATOR REGIONS (GENETICS);

EID: 0031935160     PISSN: 03438651     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006760     Document Type: Article

References (33)

1. Altschul SF, Gish W, Miller W, Myers E, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Andersson SGE, Sharp PM (1996) Codon usage and base composition in Rickettsia prowazekii. J Mol Evol 4:525-536
3. Andersson SGE, Eriksson A-S, Näslund AK, Andersen MS, Kurland CG (1996) The Rickettsia prowazekii genome: a random sequence analysis. 1:293-315
4. Baumann L, Clark MA, Rouhbakhsh D, Baumann P, Moran NA, Voegtlin DJ (1997) Endosymbionts (Buchnera) of the aphid Uroleucon sonchi contain plasmids with trpEG and remnants of trpE pseudogenes. Curr Microbiol 35:18-21
5. Baumann P, Baumann L, Lai C-Y, Rouhbakhsh D, Moran NA, Clark MA (1995) Genetics, physiology, and evolutionary relationships of the genus Buchnera: intracellular symbionts of aphids. Annu Rev Microbiol 49:55-94
6. Berlyn MKB, Low KB, Rudd KE (1996) Linkage map of Escherichia coli K-12, Edition 9. In: Neidhardt FC (ed) Escherichia coli and Salmonella; cellular and molecular biology, vol. 2. Washington DC: ASM Press, pp. 1715-1902
7. Bogorad L, Vasil IK (ed) (1991). The molecular biology of plastids. San Diego: Academic Press, Inc.
8. Bracho AM, Martínez-Torres D, Moya A, Latorre A (1995) Discovery and molecular characterization of a plasmid localized in Buchnera sp., a bacterial endosymbiont of the aphid Rhopalosipum padi. J Mol Evol 41:67-73
9. Buchner P (1965) Endosymbiosis of animals with plant organisms. New York: Interscience Publishers, Inc., pp. 210-338
10. 0) ATP synthase of Buchnera aphidicola (endosymbiont of aphids): genetic analysis of the putative ATP operon. Curr Microbiol 35:84-89.
11. Douglas AE (1996) Microorganisms in symbiosis: adaptation and specialization. In: Roberts DMcL, Sharp P, Alderson G, Collins M (ed) Evolution of microbial life, Society for General Microbiol Symposium 54. Cambridge: Cambridge University Press, pp. 225-242
12. Filichkin SA, Brumfield S, Filichkin TP, Young MJ (1997) In vitro interactions of the aphid endosymbiotic SymL chaperonin with barley yellow dwarf virus. J Virol 71:569-577
13. Fleischmann RD, Adams MD, White O (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512
14. Fraser CM, Gocayne J, White O (1995) The minimal gene complement of Mycoplasma genitalium. Science 270:397-403
15. Gray MW (1992) The endosymbiont hypothesis revisited. Int Rev Cytol 141:233-357
16. Hassan AKM, Moriya S, Baumann P, Yoshikawa H, Ogasawara N (1996) Structure of the dnaA region of the endosymbiont, Buchnera aphidicola of aphid Schizaphis graminum. DNA Res 3:415-419
17. Ishikawa H (1987) Nucleotide composition and kinetic complexity of the genomic DNA of an intracellular symbiont of the pea aphid Acyrthosiphon pisum. J Mol Evol 24:205-211
18. Ishikawa H (1989) Biochemical and molecular aspects of endosymbiosis in insects. Int Rev Cytol 116:1-45
19. Lai C-Y, Baumann P (1992) Genetic analysis of an aphid endosymbiont DNA fragment homologous to the rnpA-rpmH-dnaA-dnaN-gyrB region of eubacteria. Gene 113:175-181
20. Lai C-Y, Baumann L, Baumann P (1994) Amplification of trpEG: adaptation of Buchnera aphidicola to an endosymbiotic association with aphids. Proc Natl Acad Sci USA 91:3819-3823
21. Messer W, Weigel C (1996) Initiation of chromosome replication. In: Neidhardt FC (ed) Escherichia coli and Salmonella; Cellular and molecular biology, vol. 2. Washington DC: ASM Press, pp. 1579-1601
22. Moran N, Baumann P (1994) Phylogenetics of cytoplasmically inherited microorganisms of arthropods. Trends Ecol Evol 9:15-20
23. Muto A, Andachi Y, Yamao F, Tanaka R, Osawa S (1992) Transcription and translation. In: Manilow J (ed) Mycoplasmas; molecular biology and pathogenesis. Washington, DC: ASM Press, pp 331-347
24. Ohtaka C, Nakamura H, Ishikawa H (1992) Structures of chaperonins from an intracellular symbiont and their functional expression in Escherichia coli groE mutants. J Bacteriol 174:1869-1874
25. Rouhbakhsh D, Lai C-Y, von Dohlen CD, Clark MA, Baumann L, Baumann P, Moran NA, Voegtlin DJ (1996) The tryptophan biosynthetic pathway of aphid endosymbionts (Buchnera): genetics and evolution of plasmid-associated anthranilate synthase (trpEG) within the Aphididae. J Mol Evol 42:414-421
26. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
27. Sato S, Ishikawa H (1997) Expression and control of an operon from an intracellular symbiont which is homologous to the groE operon. J Bacteriol 179:2300-2304
28. Stein JL, Marsh TL, Wu KY, Shizuya H, DeLong EF (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 178:591-599
29. Thao ML, Baumann P (1997) Nucleotide sequence of a DNA fragment from Buchnera aphidicola (aphid endosymbiont) containing the genes aspS-trxB-serS-serC-aroA-rpsA-himD-tpiA. Curr Microbiol 35:68-69
30. Wang RF, Kushner SR (1991) Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene 100:195-199
31. Winkler HH (1990) Rickettsia species (as organisms). Annu Rev Microbiol 44:131-153.
32. Wolstenholme DR (1992) Animal mitochondrial DNA: structure and evolution. Int Rev Cytol 141:173-216
33. Yoshikawa H, Ogasawara N (1991) Structure and function of DnaA and the DnaA-box in eubacteria: evolutionary relationships of bacterial replication origins. Mol Microbiol 5:2589-2597