Stationary phase, amino acid limitation and recovery from stationary phase modulate the stability and translation of chloramphenicol acetyltransferase mRNA and total mRNA in Escherichia coli

Microbiology

Volumn 144, Issue 3, 1998, Pages 739-750

  Kuzj, Ann E S ^a   Medberry, Poonam S ^a,b   Schottel, Janet L ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b BAYER AG   (Germany)

Author keywords

cat; Escherichia coli; mRNA decay; Starvation; Stationary phase; Translation

Indexed keywords

AMINO ACID; CHLORAMPHENICOL ACETYLTRANSFERASE; MESSENGER RNA; RIFAMPICIN;

ARTICLE; CULTURE MEDIUM; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FELIS CATUS; NEGIBACTERIA; PROKARYOTA; TRIXIS;

EID: 0031883229     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-144-3-739     Document Type: Article

References (61)

1. Albertson, N. H. & Nystrom, T. (1994). Effects of starvation for exogenous carbon on functional mRNA stability and rate of peptide chain elongation in Escherichia coli. FEMS Microbiol Lett 117, 181-188.
2. Albertson, N. H., Nystrom, T. & Kjelleberg, S. (1990). Functional mRNA half-lives in the marine Vibrio sp. S14 during starvation and recovery. J Gen Microbiol 136, 2195-2199.
3. Alifano, P., Bruni, C. B. & Carlomagno, M. S. (1994). Control of mRNA processing and decay in prokaryotes. Genetica 94, 157-172.
4. Arraiano, C. M., Yancey, S. D. & Kushner, S. R. (1988). Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J Bacteriol 170, 4625-1633.
5. Belasco, J. G. & Brawerman, G. (1993). Experimental approaches to the study of mRNA decay. In Control of mRNA Stability, pp. 475-493. Edited by J. G. Belasco & G. Brawerman. San Diego: Academic Press.
6. Belasco, J. G. & Higgins, C. F. (1988). Mechanisms of mRNA decay in bacteria: a perspective. Gene 72, 15-23.
7. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
8. Casadaban, M. J. & Cohen, S. N. (1980). Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J Mol Biol 138, 179-207.
9. Chang, A. C. Y. & Cohen, S. N. (1978). Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J Bacteriol 134, 1141-1156.
10. Chuang, S.-E., Daniels, D. L. & Blattner, F. R. (1993). Global regulation of gene expression in Escherichia coli. J Bacteriol 175, 2026-2036.
11. Cohen, S. N. (1995). Surprises at the 3′ end of prokaryotic RNA. Cell 80, 829-832.
12. Cohen, S. N. & McDowall, K. J. (1997). RNase E: still a wonderfully mysterious enzyme. Mol Microbiol 23, 1099-1106.
13. Davis, B. D. & Mingioli, E. S. (1950). Mutants of Escherichia coli requiring methionine or vitamin B12. J Bacteriol 60, 17-28.
14. Deutscher, M. P. (1993a). Promiscuous exoribonucleases of Escherichia coli. J Bacteriol 175, 4577-4583.
15. Deutscher, M. P. (1993b). Ribonuclease multiplicity, diversity, and complexity. J Biol Chem 268, 13011-13014.
16. Donovan, W. P. & Kushner, S. R. (1986). Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc Natl Acad Sci USA 83, 120-124.
17. Ehretsmann, C. P., Carpousis, A. J. & Krisch, H. M. (1992). mRNA degradation in procaryotes. FASEB J 6, 3186-3192.
18. Emory, S. A. & Belasco, J. G. (1990). The ompA 5′ untranslated RNA segment functions in Escherichia coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to translational efficiency. J Bacteriol 172, 4472-4481.
19. Feinberg, A. P. & Vogelstein, B. (1983). A technique for radiolabelling DNA restriction fragments to high specific activity. Anal Biochem 132, 6-13.
20. Georgellis, D., Arvidson, S. & von Gabain, A. (1992). Decay of ompA mRNA and processing of 9S RNA are immediately affected by shifts in growth rate, but in opposite manners. J Bacteriol 174, 5382-5390.
21. Georgellis, D., Barlow, T., Arvidson, S. & von Gabain, A. (1993). Retarded RNA turnover in Escherichia coli: a means of maintaining gene expression during anaerobiosis. Mol Microbiol 9, 375-381.
22. Goldblum, K. & Apirion, D. (1981). Inactivation of the ribonucleic acid processing enzyme ribonuclease E blocks cell division. J Bacteriol 146, 128-132.
23. Gorski, K., Roch, J.-M., Prentki, P. & Krisch, H. M. (1985). The stability of bacteriophage T4 Gene 32 mRNA: a 5′ leader sequence that can stabilize mRNA transcripts. Cell 43, 461-469.
24. Gray, W. J. H. & Midgley, J. E. M. (1970). The control of ribonucleic acid synthesis in bacteria. Steady-state content of messenger ribonucleic acid in Escherichia coli M.R.E.600. Biochem J 120, 279-288.
25. Groat, R. G., Schultz, J. E., Zynchlinsky, E., Bockman, A. & Matin, A. (1986). Starvation proteins in Escherichia coli : kinetics of synthesis and role in starvation survival. J Bacteriol 168, 486-493.
26. Gupta, R. S. & Schlessinger, D. (1975). Differential modes of chemical decay for early and late lambda messenger RNA. J Mol Biol 92, 311-318.
27. Hengge-Aronis, R. (1996). Regulation of gene expression during entry into stationary phase. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd edn, pp. 1497-1512. Edited by F. C. Neidhardt et al. Washington, DC: American Society for Microbiology.
28. Ingram, J. L., Maaloe, O. & Neidhardt, F. C. (1983). Growth of cells and cultures. Growth rate as a variable. In Growth of the Bacterial Cell, pp. 227-315. Sunderland, MA: Sinaur Associates.
29. Isaksson, L. A., Fodor, K., Kirsebom, L. A., Bouadloun, F. & Muren, E. (1980). Effects of growth conditions and mutations in RNA polymerase on translational activity in vitro in Escherichia coli. Mol Gen Genet 180, 27-33.
30. Jackson, R. J. & Standart, N. (1990). Do the poly(A) tail and 3′ untranslated region control mRNA translation? Cell 62, 15-24.
31. Kennell, D. & Simmons, C. (1972). Synthesis and decay of messenger ribonucleic acid from the lactose operon of Escherichia coli during amino-acid starvation. J Mol Biol 70, 451-464.
32. Kessler, S. W. (1976). Cell membrane antigen isolation with the staphylococcal protein A-antibody adsorbent. J Immunol 117, 1482-1490.
33. Krinke, L. & Wulff, D. (1990). The cleavage specificity of RNase III. Nucleic Acids Res 18, 4809-4815.
34. Laemmli, U. K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
35. 14C in polyacrylamide gels by fluorography. Eur J Biochem 56, 335-341.
36. Lundberg, U., Nilsson, G. & von Gabain, A. (1988). The differential stability of the Escherichia coli ompA and bla mRNA at various growth rates is not correlated to the efficiency of translation. Gene 72, 141-149.
37. Matin, A. (1991). The molecular basis of carbon-starvation-induced general resistance in Escherichia coll. Mol Microbiol 5, 3-10.
38. Melefors, O., Lundberg, U. & von Gabain, A. (1993). RNA processing and degradation by RNase K and RNase E. In Control of Messenger RNA Stability, pp. 53-70. Edited by J. Belasco & G. Brawerman. San Diego: Academic Press.
39. Melin, L., Rutberg, L. & von Gabain, A. (1989). Transcriptional and posttranscriptional control of the Bacillus subtilis succinate dehydrogenase operon. J Bacteriol 171, 2110-2115.
40. Meyer, B. J. & Schottel, J. L. (1991). A novel transcriptional response by the cat gene during slow growth of Escherichia coli. J Bacteriol 173, 3523-3530.
41. Meyer, B. J. & Schottel, J. L. (1992). Characterization of cat messenger RNA decay suggests that turnover occurs by endonucleolytic cleavage in a 3′ to 5′ direction. Mol Microbiol 6, 1095-1104.
42. Minks, M. A., Suryanarayana, T. & Subramanian, A. R. (1978). Metabolic stability of the two forms of initiation factor IF-3 in Escherichia coli during the growth cycle. Eur J Biochem 82, 271-277.
43. Morse, D. E. & Guertin, M. (1971). Regulation of mRNA utilization and degradation by amino acid starvation. Nature New Biol 232, 165-169.
44. Neidhardt, F. C. & Savageau, M. A. (1996). Regulation beyond the operon. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd edn, pp. 1310-1324. Edited by F. C. Neidhardt et al. Washington, DC: American Society for Microbiology.
45. Neidhardt, F. C., Bloch, P. L. & Smith, D. F. (1974). Culture medium for enterobacteria. J Bacteriol 119, 736-747.
46. Nilsson, G., Belasco, J. G., Cohen, S. N. & von Gabain, A. (1984). Growth-rate dependent regulation of mRNA stability in Escherichia coli. Nature 312, 75-77.
47. O'Hara, E. B., Chekanova, J. A., Ingle, C. A., Kushner, Z. R., Peters, E. & Kushner, S. R. (1995). Polyadenylation helps regulate mRNA decay in Escherichia coli. Proc Natl Acad Sci USA 92, 1807-1811.
48. Pato, M. L. & von Meyenburg, K. (1970). Residual RNA synthesis in Escherichia coli after inhibition of initiation of transcription by rifampicin. Cold Spring Harbor Symp Quant Biol 35, 497-504.
49. Pedersen, S., Bloch, P. L., Reeh, S. & Neidhardt, F. C. (1978a). Patterns of protein synthesis in E. coli : a catalog of the amount of 140 individual proteins at different growth rates. Cell 14, 179-190.
50. Pedersen, S., Reeh, S. & Friesen, J. D. (1978b). Functional mRNA half lives in E. coli. Mol Gen Genet 166, 329-336.
51. Pelham, H. R. B. & Jackson, R. J. (1976). An efficient mRNA-dependent translation system from reticulocyte lysates. Eur J Biochem 67, 247-256.
52. Petersen, C. (1992). Control of functional mRNA stability in bacteria : multiple mechanisms of nucleolytic and non-nucleolytic inactivation. Mol Microbiol 6, 277-282.
53. Petersen, C. (1993). Translation and mRNA stability in bacteria: a complex relationship. In Control of mRNA Stability, pp. 117-145. Edited by J. G. Belasco & G. Brawerman. San Diego: Academic Press.
54. Raynal, L. C., Krisch, H. M. & Carpousis, A. J. (1996). Bacterial poly(A) polymerase: An enzyme that modulates RNA stability. Biochimie 78, 390-398.
55. + and relA strains of Escherichia coli during amino acid starvation. Mol Gen Genet 149, 279-289.
56. Reeve, C. A., Amy, P. S. & Matin, A. (1984). Role of protein synthesis in the survival of carbon-starved Escherichia coli K-12. J Bacteriol 160, 1041-1046.
57. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
58. Schneider, E., Blundell, M. & Kennell, D. (1978). Translation and mRNA decay. Mol Gen Genet 160, 121-129.
59. Xu, F. & Cohen, S. N. (1995). RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation. Nature 374, 180-183.
60. Yamagishi, M., Matsushima, H., Wada, A., Sakagami, M., Fujita, N. & Ishihama, A. (1993). Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth-phase-and growth-rate-dependent control. EMBO J 12, 625-630.
61. Zaidenzaig, Y. & Shaw, W. V. (1976). Affinity and hydrophobic chromatography of three variants of chloramphenicol acetyltransferases specified by R factors in Escherichia coli. FEBS Lett 62, 266-271.